Wall clock time and date at job start Mon Mar 30 2020 06:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46703 * 2 1 4 4 C 1.52996 * 109.47117 * 120.00367 * 2 1 3 5 5 C 1.50701 * 109.46708 * 182.89462 * 4 2 1 6 6 H 1.08005 * 120.00545 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00114 * 179.97438 * 5 4 2 8 8 N 1.31521 * 119.99633 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00332 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47245 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47341 * 120.00353 * 9 7 5 12 12 H 1.48505 * 109.47289 * 240.00459 * 9 7 5 13 13 N 1.46902 * 109.46965 * 240.00374 * 2 1 3 14 14 C 1.46430 * 110.99804 * 95.96209 * 13 2 1 15 15 C 1.53310 * 108.62356 * 287.81860 * 14 13 2 16 16 H 1.08999 * 109.76227 * 51.34216 * 15 14 13 17 17 N 1.46902 * 109.72836 * 172.09987 * 15 14 13 18 18 C 1.53048 * 107.97066 * 291.70805 * 15 14 13 19 19 C 1.50800 * 109.62548 * 47.27342 * 18 15 14 20 20 C 1.38624 * 118.12380 * 164.56075 * 19 18 15 21 21 C 1.38054 * 120.48675 * 179.78848 * 20 19 18 22 22 C 1.38311 * 119.89131 * 359.97164 * 21 20 19 23 23 C 1.37807 * 119.95263 * 0.11527 * 22 21 20 24 24 C 1.38367 * 122.01735 * 344.53139 * 19 18 15 25 25 H 1.08998 * 109.47390 * 68.08483 * 1 2 3 26 26 H 1.09002 * 109.47043 * 188.08066 * 1 2 3 27 27 H 1.09000 * 109.46824 * 308.07718 * 1 2 3 28 28 H 1.09002 * 109.47189 * 302.88691 * 4 2 1 29 29 H 1.08994 * 109.47319 * 62.89687 * 4 2 1 30 30 H 0.97003 * 119.99700 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.60968 * 47.56298 * 14 13 2 32 32 H 1.08999 * 109.60763 * 168.06573 * 14 13 2 33 33 H 1.00899 * 110.99683 * 178.50855 * 17 15 14 34 34 H 1.00898 * 110.99886 * 302.45810 * 17 15 14 35 35 H 1.08999 * 109.43871 * 287.23269 * 18 15 14 36 36 H 1.08999 * 109.43786 * 167.30671 * 18 15 14 37 37 H 1.08000 * 119.75161 * 359.74252 * 20 19 18 38 38 H 1.08003 * 120.05155 * 179.97438 * 21 20 19 39 39 H 1.07997 * 120.02012 * 180.08921 * 22 21 20 40 40 H 1.07990 * 119.78994 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5453 -0.6594 1.2855 6 1 4.0844 -0.1556 0.4967 7 6 4.2345 -1.2451 2.3262 8 7 3.5781 -1.8581 3.2870 9 14 6.1004 -1.1690 2.3709 10 1 6.5943 -0.4287 1.1821 11 1 6.5379 -0.4698 3.6058 12 1 6.6524 -2.5476 2.3606 13 7 2.0197 -0.6924 -1.1995 14 6 2.3284 0.2615 -2.2667 15 6 1.0119 0.8112 -2.8280 16 1 0.3868 1.1746 -2.0124 17 7 1.2918 1.9060 -3.7666 18 6 0.2982 -0.3280 -3.5595 19 6 0.2993 -1.5640 -2.6955 20 6 -0.5667 -2.5942 -3.0276 21 6 -0.6029 -3.7495 -2.2727 22 6 0.2302 -3.8832 -1.1768 23 6 1.0925 -2.8626 -0.8394 24 6 1.1318 -1.6907 -1.5975 25 1 -0.3634 0.3835 -0.9534 26 1 -0.3633 -1.0175 0.1445 27 1 -0.3633 0.6338 0.8090 28 1 1.6350 -0.2383 2.1384 29 1 1.7197 -1.7628 1.2235 30 1 4.0630 -2.2705 4.0190 31 1 2.9249 1.0802 -1.8642 32 1 2.8820 -0.2426 -3.0589 33 1 0.4385 2.2664 -4.1665 34 1 1.8195 2.6402 -3.3188 35 1 0.8160 -0.5390 -4.4952 36 1 -0.7299 -0.0348 -3.7719 37 1 -1.2183 -2.4919 -3.8828 38 1 -1.2807 -4.5476 -2.5376 39 1 0.2046 -4.7867 -0.5857 40 1 1.7421 -2.9700 0.0165 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695834661.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:42 Heat of formation + Delta-G solvation = 15.552386 kcal Electronic energy + Delta-G solvation = -20410.983390 eV Core-core repulsion = 17610.440305 eV Total energy + Delta-G solvation = -2800.543085 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 3.13 seconds Orbital eigenvalues (eV) -41.94929 -38.25182 -36.74608 -34.79892 -33.03961 -32.34345 -30.67652 -29.30591 -28.84489 -25.85856 -25.04681 -23.40912 -22.89890 -21.68580 -19.98747 -18.48799 -17.60699 -17.18283 -17.04739 -16.44776 -16.03588 -15.96516 -15.44677 -14.96763 -14.53599 -14.31617 -14.20189 -13.90907 -13.68104 -13.45357 -13.39663 -13.16340 -12.96043 -12.62766 -12.57421 -12.44071 -12.26903 -11.96237 -11.70257 -11.53540 -11.19924 -11.05560 -10.48190 -9.98894 -9.62781 -9.47611 -8.58627 -8.11139 -6.15702 0.53934 0.59780 1.38447 1.40122 1.52226 2.45303 2.82938 3.04080 3.24539 3.51518 3.77728 3.86271 4.02247 4.11860 4.24520 4.26202 4.35779 4.42341 4.47732 4.59094 4.70926 4.78805 4.81608 4.86254 4.91088 5.05208 5.08248 5.18805 5.26094 5.30869 5.47426 5.52100 5.61973 5.74706 5.78901 5.91551 6.08615 6.17150 6.30058 6.44620 6.61116 6.75191 6.97506 7.49497 9.00903 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019838 B = 0.007316 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.125904 B = 3826.259853 C = 4606.343195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 H 0.067 0.933 4 C 0.032 3.968 5 C -0.498 4.498 6 H 0.055 0.945 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.953 3.047 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.285 1.285 13 N -0.499 5.499 14 C 0.068 3.932 15 C 0.055 3.945 16 H 0.048 0.952 17 N -0.839 5.839 18 C -0.060 4.060 19 C -0.134 4.134 20 C -0.105 4.105 21 C -0.139 4.139 22 C -0.120 4.120 23 C -0.145 4.145 24 C 0.120 3.880 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.059 0.941 28 H -0.010 1.010 29 H 0.008 0.992 30 H 0.258 0.742 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.352 0.648 34 H 0.349 0.651 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.127 0.873 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.996 3.304 -14.856 18.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 H 0.085 0.915 4 C -0.005 4.005 5 C -0.536 4.536 6 H 0.073 0.927 7 C -0.200 4.200 8 N -0.580 5.580 9 Si 0.780 3.220 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.211 1.211 13 N -0.214 5.214 14 C -0.060 4.060 15 C -0.058 4.058 16 H 0.065 0.935 17 N -0.371 5.371 18 C -0.098 4.098 19 C -0.137 4.137 20 C -0.123 4.123 21 C -0.157 4.157 22 C -0.139 4.139 23 C -0.165 4.165 24 C 0.023 3.977 25 H 0.093 0.907 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.008 0.992 29 H 0.026 0.974 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.166 0.834 34 H 0.162 0.838 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.145 0.855 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.078 2.517 -14.971 17.688 hybrid contribution 0.154 0.608 1.359 1.496 sum -8.923 3.124 -13.613 16.574 Atomic orbital electron populations 1.22613 0.96295 1.01738 1.02262 1.21683 0.92518 0.96142 0.89601 0.91483 1.19196 0.95177 0.95119 0.91004 1.21461 0.92969 1.33170 1.06003 0.92707 1.25811 1.02699 0.95735 0.95707 1.70100 1.36826 1.38639 1.12456 0.85567 0.80922 0.77584 0.77966 1.19017 1.20624 1.21109 1.58460 1.43273 1.13562 1.06103 1.22217 0.96637 0.94486 0.92643 1.22095 0.96652 0.92878 0.94150 0.93467 1.58610 1.26921 1.13938 1.37670 1.20470 1.01562 0.90344 0.97382 1.20106 0.96947 0.98175 0.98491 1.21215 0.98340 0.92694 1.00099 1.21267 1.00126 0.98925 0.95408 1.21169 0.96191 0.98327 0.98194 1.21364 1.00691 0.93833 1.00617 1.18536 0.91359 0.92563 0.95207 0.90668 0.93551 0.92189 0.99179 0.97407 0.93295 0.90847 0.90987 0.83417 0.83794 0.89621 0.89012 0.83391 0.83446 0.85508 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.99 7.82 71.98 0.56 -5.43 16 2 C 0.11 4.36 1.96 44.92 0.09 4.45 16 3 H 0.07 2.72 7.44 -2.39 -0.02 2.70 16 4 C 0.03 1.70 4.43 29.85 0.13 1.84 16 5 C -0.50 -28.53 8.79 25.60 0.22 -28.30 16 6 H 0.05 3.10 7.74 -2.91 -0.02 3.08 16 7 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 8 N -0.94 -58.09 13.29 21.45 0.28 -57.80 16 9 Si 0.95 46.11 29.54 68.60 2.03 48.13 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 13 N -0.50 -19.56 4.04 -672.08 -2.72 -22.28 16 14 C 0.07 2.19 5.30 86.50 0.46 2.65 16 15 C 0.06 1.35 2.98 45.03 0.13 1.48 16 16 H 0.05 1.23 4.83 -2.39 -0.01 1.22 16 17 N -0.84 -15.99 9.26 -168.18 -1.56 -17.54 16 18 C -0.06 -1.39 5.32 29.90 0.16 -1.23 16 19 C -0.13 -3.86 5.14 -19.71 -0.10 -3.97 16 20 C -0.11 -2.59 9.63 22.32 0.21 -2.37 16 21 C -0.14 -3.55 10.05 22.24 0.22 -3.32 16 22 C -0.12 -3.86 10.03 22.19 0.22 -3.63 16 23 C -0.15 -5.78 8.05 22.50 0.18 -5.60 16 24 C 0.12 4.40 3.41 38.30 0.13 4.53 16 25 H 0.07 2.25 4.44 -2.39 -0.01 2.24 16 26 H 0.05 1.75 6.61 -2.39 -0.02 1.74 16 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 28 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 29 H 0.01 0.44 5.29 -2.39 -0.01 0.43 16 30 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 31 H 0.07 2.37 7.72 -2.39 -0.02 2.36 16 32 H 0.07 2.38 8.11 -2.39 -0.02 2.36 16 33 H 0.35 5.09 9.04 -89.69 -0.81 4.28 16 34 H 0.35 6.13 9.02 -89.70 -0.81 5.33 16 35 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 38 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 39 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 40 H 0.10 4.74 5.95 -2.92 -0.02 4.72 16 Total: -1.00 -67.04 307.06 0.57 -66.48 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -0.56 Total: 21.66 kcal Atomic # 6 Polarization: -41.74 SS G_CDS: 3.09 Total: -38.64 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -3.99 Total: -97.63 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -67.04 0.57 -66.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834661.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.030 kcal (2) G-P(sol) polarization free energy of solvation -67.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.13 seconds