Wall clock time and date at job start Mon Mar 30 2020 06:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47003 * 2 1 4 4 C 1.53004 * 109.46926 * 239.99944 * 2 1 3 5 5 C 1.50696 * 109.46747 * 176.16692 * 4 2 1 6 6 H 1.08001 * 120.00467 * 4.87965 * 5 4 2 7 7 C 1.37882 * 119.99898 * 184.87656 * 5 4 2 8 8 N 1.31514 * 119.99740 * 354.77544 * 7 5 4 9 9 Si 1.86800 * 120.00045 * 174.76914 * 7 5 4 10 10 H 1.48501 * 109.47030 * 5.01001 * 9 7 5 11 11 H 1.48509 * 109.46873 * 125.00712 * 9 7 5 12 12 H 1.48494 * 109.47449 * 245.00532 * 9 7 5 13 13 N 1.46903 * 109.46957 * 120.00328 * 2 1 3 14 14 C 1.46419 * 111.00161 * 62.94079 * 13 2 1 15 15 C 1.53383 * 108.65365 * 181.02538 * 14 13 2 16 16 H 1.08994 * 109.76864 * 308.60613 * 15 14 13 17 17 N 1.46903 * 109.80847 * 187.84990 * 15 14 13 18 18 C 1.53045 * 107.94235 * 68.21527 * 15 14 13 19 19 C 1.50796 * 109.67058 * 312.73763 * 18 15 14 20 20 C 1.38610 * 118.13292 * 195.60990 * 19 18 15 21 21 C 1.38048 * 120.49156 * 180.27863 * 20 19 18 22 22 C 1.38306 * 119.89164 * 0.03240 * 21 20 19 23 23 C 1.37810 * 119.95369 * 359.86139 * 22 21 20 24 24 C 1.38376 * 122.00967 * 15.67327 * 19 18 15 25 25 H 1.09000 * 109.47003 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46927 * 299.99889 * 1 2 3 27 27 H 1.08995 * 109.47184 * 60.00143 * 1 2 3 28 28 H 1.08993 * 109.47033 * 296.16600 * 4 2 1 29 29 H 1.08997 * 109.46656 * 56.16949 * 4 2 1 30 30 H 0.96999 * 119.99862 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.61009 * 61.27676 * 14 13 2 32 32 H 1.08998 * 109.60476 * 300.77750 * 14 13 2 33 33 H 1.00899 * 110.99708 * 180.75600 * 17 15 14 34 34 H 1.00899 * 111.00335 * 304.71202 * 17 15 14 35 35 H 1.09008 * 109.43877 * 72.79769 * 18 15 14 36 36 H 1.08998 * 109.43751 * 192.71056 * 18 15 14 37 37 H 1.08008 * 119.75407 * 0.25281 * 20 19 18 38 38 H 1.08003 * 120.05644 * 180.02562 * 21 20 19 39 39 H 1.08002 * 120.02725 * 179.88747 * 22 21 20 40 40 H 1.07995 * 119.79652 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5440 -0.6395 -1.2976 6 1 4.0873 -0.1943 -0.4773 7 6 4.2265 -1.1333 -2.3892 8 7 3.5755 -1.7670 -3.3402 9 14 6.0756 -0.9019 -2.5175 10 1 6.5829 -0.2700 -1.2730 11 1 6.7280 -2.2230 -2.7033 12 1 6.3860 -0.0290 -3.6780 13 7 2.0197 -0.6926 1.1994 14 6 1.6083 -2.0978 1.1987 15 6 2.1241 -2.7607 2.4821 16 1 3.1901 -2.5638 2.5959 17 7 1.8901 -4.2097 2.4226 18 6 1.3580 -2.1607 3.6633 19 6 1.3323 -0.6579 3.5411 20 6 0.9823 0.0829 4.6591 21 6 0.9375 1.4614 4.6001 22 6 1.2429 2.1109 3.4179 23 6 1.5940 1.3814 2.3027 24 6 1.6439 -0.0129 2.3571 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.7338 -1.7668 -1.2156 29 1 1.6216 -0.2486 -2.1379 30 1 4.0555 -2.1140 -4.1083 31 1 2.0321 -2.6026 0.3305 32 1 0.5206 -2.1604 1.1663 33 1 2.2121 -4.6628 3.2647 34 1 0.9164 -4.4122 2.2528 35 1 0.3368 -2.5420 3.6647 36 1 1.8506 -2.4400 4.5946 37 1 0.7424 -0.4222 5.5832 38 1 0.6642 2.0317 5.4756 39 1 1.2068 3.1892 3.3688 40 1 1.8324 1.8912 1.3810 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695834664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:51 Heat of formation + Delta-G solvation = 28.689486 kcal Electronic energy + Delta-G solvation = -20195.966768 eV Core-core repulsion = 17395.993350 eV Total energy + Delta-G solvation = -2799.973418 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.50577 -37.04309 -35.92050 -32.92164 -31.80551 -30.82470 -29.20949 -27.70912 -27.31685 -24.80490 -23.26641 -22.20487 -22.01246 -19.54411 -18.83717 -16.96621 -16.24021 -15.97918 -15.53187 -14.87078 -14.60112 -14.46609 -13.92604 -13.65829 -13.28452 -13.07425 -12.98294 -12.90885 -12.44365 -11.95071 -11.83064 -11.63367 -11.44382 -11.10600 -10.95270 -10.81399 -10.72029 -10.43076 -10.31937 -9.88222 -9.45796 -9.19842 -8.99345 -8.59917 -8.44951 -8.29059 -7.08109 -5.94274 -3.92939 1.65275 1.77162 3.36699 3.44553 3.50238 3.95612 4.27017 4.53700 4.72369 4.91548 5.05379 5.20226 5.23182 5.32177 5.42678 5.54142 5.63542 5.67813 5.71147 5.79998 5.83026 5.88763 5.96341 6.14425 6.23506 6.33121 6.37767 6.55584 6.57680 6.68114 6.73612 6.80227 6.86133 7.15070 7.26047 7.44685 7.53744 7.67250 7.81610 7.94706 8.06344 8.48450 9.13625 9.70168 11.17403 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019855 B = 0.006767 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.906976 B = 4136.708085 C = 4641.776637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.087 3.913 3 H 0.083 0.917 4 C 0.025 3.975 5 C -0.501 4.501 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.463 5.463 14 C 0.066 3.934 15 C 0.089 3.911 16 H 0.093 0.907 17 N -0.836 5.836 18 C -0.105 4.105 19 C -0.141 4.141 20 C -0.092 4.092 21 C -0.171 4.171 22 C -0.095 4.095 23 C -0.166 4.166 24 C 0.153 3.847 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.022 0.978 29 H 0.026 0.974 30 H 0.258 0.742 31 H 0.112 0.888 32 H 0.037 0.963 33 H 0.340 0.660 34 H 0.337 0.663 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.378 1.565 14.164 16.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.018 4.018 3 H 0.101 0.899 4 C -0.012 4.012 5 C -0.539 4.539 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.172 5.172 14 C -0.061 4.061 15 C -0.023 4.023 16 H 0.112 0.888 17 N -0.364 5.364 18 C -0.144 4.144 19 C -0.146 4.146 20 C -0.110 4.110 21 C -0.190 4.190 22 C -0.113 4.113 23 C -0.187 4.187 24 C 0.051 3.949 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.040 0.960 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.130 0.870 32 H 0.056 0.944 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.319 1.397 13.213 14.713 hybrid contribution -0.240 0.309 0.802 0.892 sum -6.560 1.706 14.014 15.567 Atomic orbital electron populations 1.22507 0.98431 1.01642 1.01485 1.22149 0.90849 0.98915 0.89877 0.89903 1.19313 0.96694 0.95476 0.89747 1.21189 0.91426 1.38095 1.03185 0.91976 1.24991 0.98098 0.95340 0.96092 1.69974 1.35649 1.37888 1.10399 0.86585 0.86151 0.77629 0.77940 1.19752 1.21278 1.21213 1.57905 1.55514 1.02755 1.01062 1.22145 0.97578 0.86951 0.99397 1.21584 1.00714 0.86649 0.93316 0.88843 1.58741 1.25057 1.09094 1.43540 1.21369 1.00498 0.92437 1.00116 1.19316 1.06603 0.94884 0.93779 1.20809 0.99267 0.93948 0.97022 1.20788 1.05956 0.94316 0.97958 1.20870 0.98473 0.99219 0.92771 1.21243 1.05125 0.92638 0.99709 1.18900 0.92091 0.92685 0.91241 0.92838 0.93412 0.91913 0.96022 0.95561 0.93233 0.86969 0.94446 0.84763 0.85051 0.91696 0.91385 0.87030 0.86976 0.86628 0.85359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 8.58 37.16 0.32 -2.80 16 2 C 0.09 1.74 1.90 -67.71 -0.13 1.61 16 3 H 0.08 1.67 5.86 -51.93 -0.30 1.37 16 4 C 0.02 0.61 4.13 -27.88 -0.12 0.49 16 5 C -0.50 -13.81 8.81 -34.44 -0.30 -14.11 16 6 H 0.06 1.74 7.72 -52.49 -0.41 1.33 16 7 C 0.06 1.57 5.45 -17.82 -0.10 1.47 16 8 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 9 Si 0.89 22.02 29.54 -169.99 -5.02 16.99 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 N -0.46 -8.91 4.20 -163.74 -0.69 -9.60 16 14 C 0.07 1.18 4.25 -3.89 -0.02 1.17 16 15 C 0.09 1.36 3.47 -67.49 -0.23 1.13 16 16 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 17 N -0.84 -10.87 9.28 -4.48 -0.04 -10.91 16 18 C -0.10 -1.39 5.40 -27.81 -0.15 -1.54 16 19 C -0.14 -2.17 5.74 -104.39 -0.60 -2.77 16 20 C -0.09 -1.24 9.63 -39.51 -0.38 -1.62 16 21 C -0.17 -2.24 10.05 -39.63 -0.40 -2.64 16 22 C -0.09 -1.32 10.03 -39.71 -0.40 -1.72 16 23 C -0.17 -2.71 8.13 -39.22 -0.32 -3.03 16 24 C 0.15 2.65 4.90 -83.85 -0.41 2.24 16 25 H 0.05 0.91 6.45 -51.93 -0.34 0.57 16 26 H 0.05 0.77 6.66 -51.93 -0.35 0.42 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.02 0.56 6.17 -51.93 -0.32 0.24 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.11 2.41 6.24 -51.93 -0.32 2.08 16 32 H 0.04 0.64 6.30 -51.93 -0.33 0.31 16 33 H 0.34 3.59 9.05 -39.29 -0.36 3.23 16 34 H 0.34 3.87 8.98 -39.29 -0.35 3.52 16 35 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.11 1.25 8.06 -52.48 -0.42 0.83 16 38 H 0.11 1.19 8.06 -52.48 -0.42 0.77 16 39 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.13 2.12 5.81 -52.49 -0.31 1.81 16 LS Contribution 310.56 15.07 4.68 4.68 Total: -1.00 -29.90 310.56 -9.46 -39.36 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -5.89 Total: 7.59 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -3.23 Total: -22.14 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.01 Total: -46.49 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.90 -9.46 -39.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.049 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds