Wall clock time and date at job start Mon Mar 30 2020 06:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47003 * 2 1 4 4 C 1.53004 * 109.46926 * 239.99944 * 2 1 3 5 5 C 1.50696 * 109.46747 * 176.16692 * 4 2 1 6 6 H 1.08001 * 120.00467 * 4.87965 * 5 4 2 7 7 C 1.37882 * 119.99898 * 184.87656 * 5 4 2 8 8 N 1.31514 * 119.99740 * 354.77544 * 7 5 4 9 9 Si 1.86800 * 120.00045 * 174.76914 * 7 5 4 10 10 H 1.48501 * 109.47030 * 5.01001 * 9 7 5 11 11 H 1.48509 * 109.46873 * 125.00712 * 9 7 5 12 12 H 1.48494 * 109.47449 * 245.00532 * 9 7 5 13 13 N 1.46903 * 109.46957 * 120.00328 * 2 1 3 14 14 C 1.46419 * 111.00161 * 62.94079 * 13 2 1 15 15 C 1.53383 * 108.65365 * 181.02538 * 14 13 2 16 16 H 1.08994 * 109.76864 * 308.60613 * 15 14 13 17 17 N 1.46903 * 109.80847 * 187.84990 * 15 14 13 18 18 C 1.53045 * 107.94235 * 68.21527 * 15 14 13 19 19 C 1.50796 * 109.67058 * 312.73763 * 18 15 14 20 20 C 1.38610 * 118.13292 * 195.60990 * 19 18 15 21 21 C 1.38048 * 120.49156 * 180.27863 * 20 19 18 22 22 C 1.38306 * 119.89164 * 0.03240 * 21 20 19 23 23 C 1.37810 * 119.95369 * 359.86139 * 22 21 20 24 24 C 1.38376 * 122.00967 * 15.67327 * 19 18 15 25 25 H 1.09000 * 109.47003 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46927 * 299.99889 * 1 2 3 27 27 H 1.08995 * 109.47184 * 60.00143 * 1 2 3 28 28 H 1.08993 * 109.47033 * 296.16600 * 4 2 1 29 29 H 1.08997 * 109.46656 * 56.16949 * 4 2 1 30 30 H 0.96999 * 119.99862 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.61009 * 61.27676 * 14 13 2 32 32 H 1.08998 * 109.60476 * 300.77750 * 14 13 2 33 33 H 1.00899 * 110.99708 * 180.75600 * 17 15 14 34 34 H 1.00899 * 111.00335 * 304.71202 * 17 15 14 35 35 H 1.09008 * 109.43877 * 72.79769 * 18 15 14 36 36 H 1.08998 * 109.43751 * 192.71056 * 18 15 14 37 37 H 1.08008 * 119.75407 * 0.25281 * 20 19 18 38 38 H 1.08003 * 120.05644 * 180.02562 * 21 20 19 39 39 H 1.08002 * 120.02725 * 179.88747 * 22 21 20 40 40 H 1.07995 * 119.79652 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5440 -0.6395 -1.2976 6 1 4.0873 -0.1943 -0.4773 7 6 4.2265 -1.1333 -2.3892 8 7 3.5755 -1.7670 -3.3402 9 14 6.0756 -0.9019 -2.5175 10 1 6.5829 -0.2700 -1.2730 11 1 6.7280 -2.2230 -2.7033 12 1 6.3860 -0.0290 -3.6780 13 7 2.0197 -0.6926 1.1994 14 6 1.6083 -2.0978 1.1987 15 6 2.1241 -2.7607 2.4821 16 1 3.1901 -2.5638 2.5959 17 7 1.8901 -4.2097 2.4226 18 6 1.3580 -2.1607 3.6633 19 6 1.3323 -0.6579 3.5411 20 6 0.9823 0.0829 4.6591 21 6 0.9375 1.4614 4.6001 22 6 1.2429 2.1109 3.4179 23 6 1.5940 1.3814 2.3027 24 6 1.6439 -0.0129 2.3571 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.7338 -1.7668 -1.2156 29 1 1.6216 -0.2486 -2.1379 30 1 4.0555 -2.1140 -4.1083 31 1 2.0321 -2.6026 0.3305 32 1 0.5206 -2.1604 1.1663 33 1 2.2121 -4.6628 3.2647 34 1 0.9164 -4.4122 2.2528 35 1 0.3368 -2.5420 3.6647 36 1 1.8506 -2.4400 4.5946 37 1 0.7424 -0.4222 5.5832 38 1 0.6642 2.0317 5.4756 39 1 1.2068 3.1892 3.3688 40 1 1.8324 1.8912 1.3810 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695834664.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:50 Heat of formation + Delta-G solvation = 9.246800 kcal Electronic energy + Delta-G solvation = -20196.809866 eV Core-core repulsion = 17395.993350 eV Total energy + Delta-G solvation = -2800.816516 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.78233 -38.31155 -37.19437 -34.93025 -33.05526 -32.28794 -30.46074 -29.29755 -28.75712 -26.11816 -25.14954 -23.45630 -23.29015 -20.89547 -20.20809 -18.43099 -18.19112 -17.20964 -16.77789 -16.46386 -16.11898 -15.81896 -15.19672 -14.86187 -14.65241 -14.46687 -14.28906 -14.17925 -13.95485 -13.56039 -13.37964 -13.15132 -12.97843 -12.70366 -12.47964 -12.34673 -12.13879 -12.02866 -11.87745 -11.40226 -11.19503 -11.13831 -10.55092 -10.49378 -9.65715 -9.53988 -8.38109 -8.14562 -6.19648 0.54523 0.62537 1.38119 1.39597 1.52219 2.43995 2.73326 3.04308 3.20286 3.61612 3.75189 3.85708 4.00788 4.08118 4.23320 4.32375 4.33420 4.37420 4.46881 4.54818 4.58483 4.67845 4.76389 4.87533 4.97570 5.02636 5.07041 5.12239 5.19253 5.25461 5.37112 5.50989 5.60281 5.69304 5.74992 5.85152 6.05791 6.21557 6.26677 6.39308 6.62076 6.65160 6.93407 7.46774 8.97215 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019855 B = 0.006767 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.906976 B = 4136.708085 C = 4641.776637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.097 3.903 3 H 0.077 0.923 4 C 0.033 3.967 5 C -0.507 4.507 6 H 0.053 0.947 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.277 1.277 13 N -0.483 5.483 14 C 0.072 3.928 15 C 0.099 3.901 16 H 0.067 0.933 17 N -0.844 5.844 18 C -0.095 4.095 19 C -0.150 4.150 20 C -0.091 4.091 21 C -0.162 4.162 22 C -0.096 4.096 23 C -0.185 4.185 24 C 0.123 3.877 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.001 0.999 29 H 0.002 0.998 30 H 0.260 0.740 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.356 0.644 34 H 0.348 0.652 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.841 2.138 17.120 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.009 4.009 3 H 0.095 0.905 4 C -0.004 4.004 5 C -0.546 4.546 6 H 0.072 0.928 7 C -0.195 4.195 8 N -0.575 5.575 9 Si 0.779 3.221 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.203 1.203 13 N -0.194 5.194 14 C -0.054 4.054 15 C -0.013 4.013 16 H 0.085 0.915 17 N -0.375 5.375 18 C -0.134 4.134 19 C -0.154 4.154 20 C -0.110 4.110 21 C -0.181 4.181 22 C -0.115 4.115 23 C -0.206 4.206 24 C 0.023 3.977 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.019 0.981 29 H 0.020 0.980 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.171 0.829 34 H 0.161 0.839 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.157 0.843 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.788 1.975 16.199 17.675 hybrid contribution -0.133 0.161 -0.044 0.214 sum -6.922 2.136 16.155 17.705 Atomic orbital electron populations 1.22343 0.96219 1.01788 1.02359 1.21818 0.92558 0.97806 0.88693 0.90521 1.19124 0.95348 0.94572 0.91348 1.21445 0.92995 1.37356 1.02768 0.92836 1.25794 1.02642 0.95174 0.95911 1.70087 1.37407 1.38966 1.11030 0.85577 0.80773 0.77662 0.78091 1.19404 1.20898 1.20279 1.57843 1.56994 1.03114 1.01488 1.21971 0.97620 0.86667 0.99167 1.21319 0.99346 0.87821 0.92829 0.91478 1.58632 1.26091 1.07922 1.44822 1.21314 1.01263 0.91100 0.99699 1.19629 1.06151 0.96123 0.93540 1.21180 0.98087 0.94313 0.97399 1.21224 1.03914 0.94543 0.98466 1.21170 0.97552 1.00436 0.92333 1.21290 1.06395 0.92564 1.00351 1.19029 0.94443 0.93126 0.91124 0.92992 0.91912 0.91496 0.98068 0.98012 0.93096 0.91562 0.93794 0.82931 0.83883 0.89957 0.89088 0.83929 0.83728 0.84337 0.86741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.87 8.58 71.98 0.62 -5.25 16 2 C 0.10 4.05 1.90 44.92 0.09 4.13 16 3 H 0.08 3.25 5.86 -2.39 -0.01 3.24 16 4 C 0.03 1.74 4.13 29.85 0.12 1.86 16 5 C -0.51 -29.20 8.81 25.60 0.23 -28.97 16 6 H 0.05 3.11 7.72 -2.91 -0.02 3.09 16 7 C 0.00 0.10 5.45 84.66 0.46 0.56 16 8 N -0.93 -57.35 13.29 21.45 0.29 -57.06 16 9 Si 0.95 46.20 29.54 68.60 2.03 48.23 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 N -0.48 -19.17 4.20 -671.95 -2.82 -21.99 16 14 C 0.07 2.70 4.25 86.52 0.37 3.07 16 15 C 0.10 2.99 3.47 45.06 0.16 3.14 16 16 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 17 N -0.84 -21.23 9.28 -168.08 -1.56 -22.79 16 18 C -0.09 -2.26 5.40 29.89 0.16 -2.10 16 19 C -0.15 -4.25 5.74 -19.71 -0.11 -4.36 16 20 C -0.09 -2.10 9.63 22.31 0.21 -1.89 16 21 C -0.16 -3.58 10.05 22.24 0.22 -3.36 16 22 C -0.10 -2.44 10.03 22.18 0.22 -2.22 16 23 C -0.19 -5.91 8.13 22.50 0.18 -5.73 16 24 C 0.12 4.20 4.90 38.30 0.19 4.39 16 25 H 0.05 1.80 6.45 -2.39 -0.02 1.78 16 26 H 0.06 1.99 6.66 -2.38 -0.02 1.97 16 27 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.00 0.06 6.17 -2.39 -0.01 0.05 16 29 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 31 H 0.07 3.05 6.24 -2.39 -0.01 3.03 16 32 H 0.04 1.53 6.30 -2.39 -0.02 1.51 16 33 H 0.36 6.91 9.05 -89.69 -0.81 6.09 16 34 H 0.35 7.57 8.98 -89.69 -0.81 6.76 16 35 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 38 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 39 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 40 H 0.11 3.86 5.81 -2.91 -0.02 3.85 16 Total: -1.00 -66.80 310.56 0.49 -66.31 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: -0.56 Total: 24.04 kcal Atomic # 6 Polarization: -39.84 SS G_CDS: 3.12 Total: -36.73 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -4.09 Total: -101.85 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -66.80 0.49 -66.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834664.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.560 kcal (2) G-P(sol) polarization free energy of solvation -66.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds