Wall clock time and date at job start Mon Mar 30 2020 06:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47580 * 2 1 4 4 C 1.53007 * 109.47121 * 119.99532 * 2 1 3 5 5 C 1.50699 * 109.47261 * 189.42590 * 4 2 1 6 6 H 1.08003 * 120.00256 * 4.72620 * 5 4 2 7 7 C 1.37876 * 120.00061 * 184.73392 * 5 4 2 8 8 N 1.31525 * 119.99875 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00308 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47035 * 89.99662 * 9 7 5 11 11 H 1.48502 * 109.47274 * 209.99752 * 9 7 5 12 12 H 1.48500 * 109.47003 * 329.99759 * 9 7 5 13 13 N 1.46902 * 109.47623 * 239.99276 * 2 1 3 14 14 C 1.46430 * 110.99748 * 82.77156 * 13 2 1 15 15 C 1.53369 * 108.65894 * 72.15155 * 14 13 2 16 16 H 1.09000 * 109.77533 * 308.60452 * 15 14 13 17 17 N 1.46903 * 109.76547 * 187.87731 * 15 14 13 18 18 C 1.53046 * 107.94063 * 68.21749 * 15 14 13 19 19 C 1.50803 * 109.65565 * 312.68659 * 18 15 14 20 20 C 1.38619 * 118.13346 * 195.69555 * 19 18 15 21 21 C 1.38057 * 120.48653 * 180.24184 * 20 19 18 22 22 C 1.38308 * 119.89069 * 0.06244 * 21 20 19 23 23 C 1.37800 * 119.95466 * 359.86161 * 22 21 20 24 24 C 1.38383 * 122.01151 * 15.73969 * 19 18 15 25 25 H 1.09006 * 109.47321 * 300.00717 * 1 2 3 26 26 H 1.09001 * 109.46960 * 60.00379 * 1 2 3 27 27 H 1.08997 * 109.47310 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46919 * 309.42646 * 4 2 1 29 29 H 1.08999 * 109.47100 * 69.41922 * 4 2 1 30 30 H 0.96992 * 119.99893 * 180.02562 * 8 7 5 31 31 H 1.09009 * 109.60429 * 312.39872 * 14 13 2 32 32 H 1.08995 * 109.60338 * 191.91144 * 14 13 2 33 33 H 1.00903 * 111.00160 * 180.02562 * 17 15 14 34 34 H 1.00903 * 111.00196 * 303.95488 * 17 15 14 35 35 H 1.08999 * 109.43710 * 72.73871 * 18 15 14 36 36 H 1.08996 * 109.44183 * 192.67111 * 18 15 14 37 37 H 1.07996 * 119.75209 * 0.26380 * 20 19 18 38 38 H 1.08002 * 120.05142 * 180.08389 * 21 20 19 39 39 H 1.08006 * 120.01944 * 179.87770 * 22 21 20 40 40 H 1.07996 * 119.79380 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5289 -0.5229 1.3713 6 1 4.0466 0.1213 0.6760 7 6 4.2302 -1.1639 2.3703 8 7 3.5997 -1.9481 3.2173 9 14 6.0758 -0.9187 2.5210 10 1 6.3505 0.2375 3.4116 11 1 6.6926 -2.1422 3.0937 12 1 6.6517 -0.6565 1.1776 13 7 2.0197 -0.6926 -1.1993 14 6 2.0325 0.2057 -2.3556 15 6 3.1728 1.2160 -2.1795 16 1 3.1021 1.6845 -1.1978 17 7 3.0929 2.2430 -3.2268 18 6 4.4970 0.4576 -2.2968 19 6 4.4460 -0.7866 -1.4461 20 6 5.6397 -1.4278 -1.1538 21 6 5.6490 -2.5734 -0.3834 22 6 4.4600 -3.0881 0.1007 23 6 3.2696 -2.4553 -0.1844 24 6 3.2541 -1.2943 -0.9598 25 1 -0.3634 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.5457 -0.3137 2.1313 29 1 1.8205 -1.7858 1.1693 30 1 4.0930 -2.3988 3.9203 31 1 1.0815 0.7348 -2.4183 32 1 2.1929 -0.3720 -3.2658 33 1 3.8361 2.9184 -3.1286 34 1 3.1038 1.8248 -4.1450 35 1 4.6645 0.1791 -3.3372 36 1 5.3121 1.0960 -1.9563 37 1 6.5692 -1.0281 -1.5313 38 1 6.5832 -3.0666 -0.1588 39 1 4.4646 -3.9853 0.7020 40 1 2.3427 -2.8597 0.1946 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695834667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:01 Heat of formation + Delta-G solvation = 49.757858 kcal Electronic energy + Delta-G solvation = -21325.115461 eV Core-core repulsion = 18526.055636 eV Total energy + Delta-G solvation = -2799.059825 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.40393 -36.55124 -35.54310 -32.79064 -31.33104 -30.64463 -29.40400 -27.24977 -26.82747 -24.44811 -22.88977 -21.69681 -21.10863 -20.70960 -18.16455 -16.50685 -16.11106 -15.72733 -15.34408 -15.04369 -14.42439 -13.88597 -13.74444 -13.31408 -13.15949 -12.79729 -12.62844 -12.21345 -12.10613 -11.83800 -11.59292 -11.38099 -11.11704 -10.88998 -10.74027 -10.65921 -10.51388 -10.28749 -10.09658 -9.82273 -9.08549 -9.05567 -8.59161 -8.31990 -8.29748 -7.42829 -6.83065 -5.96099 -3.84232 2.42593 2.55095 3.37439 3.43434 3.52152 4.40673 4.55101 4.75259 4.89629 5.16692 5.23613 5.45673 5.52046 5.69722 5.82972 5.88403 5.93514 5.99981 6.01800 6.07605 6.17077 6.20907 6.35911 6.46300 6.53572 6.59509 6.75471 6.85268 6.95031 7.05376 7.19023 7.27949 7.42522 7.49804 7.57420 7.63873 7.70794 7.86465 8.01424 8.05502 8.36822 8.44572 9.06419 9.69442 11.14547 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019717 B = 0.010953 C = 0.009018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.769432 B = 2555.680573 C = 3104.058034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.044 0.956 4 C 0.006 3.994 5 C -0.505 4.505 6 H 0.059 0.941 7 C 0.076 3.924 8 N -0.889 5.889 9 Si 0.867 3.133 10 H -0.293 1.293 11 H -0.290 1.290 12 H -0.256 1.256 13 N -0.494 5.494 14 C 0.068 3.932 15 C 0.053 3.947 16 H 0.090 0.910 17 N -0.840 5.840 18 C -0.099 4.099 19 C -0.132 4.132 20 C -0.115 4.115 21 C -0.140 4.140 22 C -0.107 4.107 23 C -0.031 4.031 24 C 0.159 3.841 25 H 0.053 0.947 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.018 0.982 29 H 0.043 0.957 30 H 0.257 0.743 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.338 0.662 34 H 0.335 0.665 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.366 2.355 -10.544 10.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.023 4.023 3 H 0.062 0.938 4 C -0.031 4.031 5 C -0.543 4.543 6 H 0.077 0.923 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.696 3.304 10 H -0.221 1.221 11 H -0.216 1.216 12 H -0.180 1.180 13 N -0.212 5.212 14 C -0.060 4.060 15 C -0.060 4.060 16 H 0.108 0.892 17 N -0.367 5.367 18 C -0.138 4.138 19 C -0.135 4.135 20 C -0.134 4.134 21 C -0.159 4.159 22 C -0.126 4.126 23 C -0.051 4.051 24 C 0.063 3.937 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.037 0.963 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.122 0.878 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.449 2.092 -10.169 10.483 hybrid contribution 2.838 0.457 0.374 2.899 sum 1.389 2.549 -9.795 10.216 Atomic orbital electron populations 1.21816 0.95997 1.01558 1.00083 1.21953 0.93528 0.96309 0.90463 0.93844 1.19760 0.96036 0.97082 0.90248 1.21227 0.92466 1.27228 1.13358 0.92313 1.24672 0.97177 0.95167 0.95501 1.69944 1.35449 1.30300 1.17110 0.86991 0.87502 0.77111 0.78807 1.22077 1.21575 1.18029 1.58906 1.24547 1.32239 1.05461 1.22103 0.97857 0.92341 0.93722 1.22192 0.95242 0.92154 0.96419 0.89246 1.58954 1.53813 1.17961 1.05998 1.21211 0.98648 0.95511 0.98439 1.19286 0.93026 0.96849 1.04359 1.20422 0.95792 0.96598 1.00566 1.20590 0.97141 0.97590 1.00530 1.20496 0.92473 1.00185 0.99455 1.20686 0.97738 0.92754 0.93900 1.17876 0.86580 0.93516 0.95706 0.92840 0.93996 0.92527 0.96344 0.93910 0.93309 0.90068 0.91428 0.85039 0.85281 0.92188 0.91924 0.88637 0.88474 0.87799 0.86477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.37 37.15 0.35 -1.99 16 2 C 0.08 1.65 2.26 -67.71 -0.15 1.50 16 3 H 0.04 0.91 6.09 -51.93 -0.32 0.60 16 4 C 0.01 0.13 3.98 -27.88 -0.11 0.02 16 5 C -0.51 -13.03 5.19 -34.44 -0.18 -13.21 16 6 H 0.06 1.56 5.72 -52.48 -0.30 1.26 16 7 C 0.08 2.05 3.80 -17.82 -0.07 1.98 16 8 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 9 Si 0.87 21.55 27.04 -169.99 -4.60 16.95 16 10 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.26 -6.15 5.84 56.52 0.33 -5.82 16 13 N -0.49 -9.37 4.37 -163.74 -0.72 -10.09 16 14 C 0.07 1.10 5.29 -3.89 -0.02 1.08 16 15 C 0.05 0.82 3.29 -67.50 -0.22 0.60 16 16 H 0.09 1.65 6.34 -51.93 -0.33 1.32 16 17 N -0.84 -10.42 9.28 -4.48 -0.04 -10.46 16 18 C -0.10 -1.60 5.41 -27.81 -0.15 -1.75 16 19 C -0.13 -2.58 4.18 -104.38 -0.44 -3.02 16 20 C -0.11 -2.28 8.74 -39.51 -0.35 -2.63 16 21 C -0.14 -2.86 7.50 -39.62 -0.30 -3.15 16 22 C -0.11 -2.29 7.99 -39.72 -0.32 -2.61 16 23 C -0.03 -0.69 6.06 -39.23 -0.24 -0.92 16 24 C 0.16 3.28 3.27 -83.85 -0.27 3.00 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.04 0.64 7.20 -51.93 -0.37 0.27 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.02 0.48 8.12 -51.93 -0.42 0.06 16 29 H 0.04 1.09 5.08 -51.93 -0.26 0.82 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.08 1.25 7.05 -51.92 -0.37 0.89 16 32 H 0.07 1.03 8.11 -51.93 -0.42 0.61 16 33 H 0.34 3.75 9.05 -39.29 -0.36 3.39 16 34 H 0.34 3.58 8.99 -39.29 -0.35 3.23 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 40 H 0.12 2.65 6.15 -52.49 -0.32 2.33 16 LS Contribution 293.29 15.07 4.42 4.42 Total: -1.00 -27.75 293.29 -8.65 -36.40 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.99 Total: 8.24 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -2.46 Total: -21.11 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -0.02 Total: -44.90 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.60 Total: 16.95 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.75 -8.65 -36.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.155 kcal (2) G-P(sol) polarization free energy of solvation -27.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds