Wall clock time and date at job start Mon Mar 30 2020 06:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47580 * 2 1 4 4 C 1.53007 * 109.47121 * 119.99532 * 2 1 3 5 5 C 1.50699 * 109.47261 * 189.42590 * 4 2 1 6 6 H 1.08003 * 120.00256 * 4.72620 * 5 4 2 7 7 C 1.37876 * 120.00061 * 184.73392 * 5 4 2 8 8 N 1.31525 * 119.99875 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00308 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47035 * 89.99662 * 9 7 5 11 11 H 1.48502 * 109.47274 * 209.99752 * 9 7 5 12 12 H 1.48500 * 109.47003 * 329.99759 * 9 7 5 13 13 N 1.46902 * 109.47623 * 239.99276 * 2 1 3 14 14 C 1.46430 * 110.99748 * 82.77156 * 13 2 1 15 15 C 1.53369 * 108.65894 * 72.15155 * 14 13 2 16 16 H 1.09000 * 109.77533 * 308.60452 * 15 14 13 17 17 N 1.46903 * 109.76547 * 187.87731 * 15 14 13 18 18 C 1.53046 * 107.94063 * 68.21749 * 15 14 13 19 19 C 1.50803 * 109.65565 * 312.68659 * 18 15 14 20 20 C 1.38619 * 118.13346 * 195.69555 * 19 18 15 21 21 C 1.38057 * 120.48653 * 180.24184 * 20 19 18 22 22 C 1.38308 * 119.89069 * 0.06244 * 21 20 19 23 23 C 1.37800 * 119.95466 * 359.86161 * 22 21 20 24 24 C 1.38383 * 122.01151 * 15.73969 * 19 18 15 25 25 H 1.09006 * 109.47321 * 300.00717 * 1 2 3 26 26 H 1.09001 * 109.46960 * 60.00379 * 1 2 3 27 27 H 1.08997 * 109.47310 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46919 * 309.42646 * 4 2 1 29 29 H 1.08999 * 109.47100 * 69.41922 * 4 2 1 30 30 H 0.96992 * 119.99893 * 180.02562 * 8 7 5 31 31 H 1.09009 * 109.60429 * 312.39872 * 14 13 2 32 32 H 1.08995 * 109.60338 * 191.91144 * 14 13 2 33 33 H 1.00903 * 111.00160 * 180.02562 * 17 15 14 34 34 H 1.00903 * 111.00196 * 303.95488 * 17 15 14 35 35 H 1.08999 * 109.43710 * 72.73871 * 18 15 14 36 36 H 1.08996 * 109.44183 * 192.67111 * 18 15 14 37 37 H 1.07996 * 119.75209 * 0.26380 * 20 19 18 38 38 H 1.08002 * 120.05142 * 180.08389 * 21 20 19 39 39 H 1.08006 * 120.01944 * 179.87770 * 22 21 20 40 40 H 1.07996 * 119.79380 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5289 -0.5229 1.3713 6 1 4.0466 0.1213 0.6760 7 6 4.2302 -1.1639 2.3703 8 7 3.5997 -1.9481 3.2173 9 14 6.0758 -0.9187 2.5210 10 1 6.3505 0.2375 3.4116 11 1 6.6926 -2.1422 3.0937 12 1 6.6517 -0.6565 1.1776 13 7 2.0197 -0.6926 -1.1993 14 6 2.0325 0.2057 -2.3556 15 6 3.1728 1.2160 -2.1795 16 1 3.1021 1.6845 -1.1978 17 7 3.0929 2.2430 -3.2268 18 6 4.4970 0.4576 -2.2968 19 6 4.4460 -0.7866 -1.4461 20 6 5.6397 -1.4278 -1.1538 21 6 5.6490 -2.5734 -0.3834 22 6 4.4600 -3.0881 0.1007 23 6 3.2696 -2.4553 -0.1844 24 6 3.2541 -1.2943 -0.9598 25 1 -0.3634 0.5140 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.5457 -0.3137 2.1313 29 1 1.8205 -1.7858 1.1693 30 1 4.0930 -2.3988 3.9203 31 1 1.0815 0.7348 -2.4183 32 1 2.1929 -0.3720 -3.2658 33 1 3.8361 2.9184 -3.1286 34 1 3.1038 1.8248 -4.1450 35 1 4.6645 0.1791 -3.3372 36 1 5.3121 1.0960 -1.9563 37 1 6.5692 -1.0281 -1.5313 38 1 6.5832 -3.0666 -0.1588 39 1 4.4646 -3.9853 0.7020 40 1 2.3427 -2.8597 0.1946 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695834667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:58 Heat of formation + Delta-G solvation = 31.390091 kcal Electronic energy + Delta-G solvation = -21325.911947 eV Core-core repulsion = 18526.055636 eV Total energy + Delta-G solvation = -2799.856311 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -41.92505 -38.04266 -37.00326 -34.63276 -32.85713 -32.16857 -31.03411 -28.65707 -28.50416 -25.92312 -24.72329 -23.15169 -22.68545 -22.25848 -19.65194 -18.44247 -17.57075 -17.20100 -16.86932 -16.54319 -16.27319 -15.30020 -15.17009 -14.89206 -14.54680 -14.25424 -14.18621 -13.88734 -13.63273 -13.50344 -13.29947 -12.91453 -12.69699 -12.61739 -12.39322 -12.27461 -12.13800 -11.85811 -11.72428 -11.54410 -10.99208 -10.87321 -10.38353 -9.85695 -9.63716 -9.06570 -8.41430 -8.05225 -5.94994 0.82723 0.91952 1.38038 1.41190 1.51912 2.50750 2.92375 3.34586 3.37618 3.64151 3.88353 3.92799 4.17580 4.27831 4.35465 4.43778 4.48098 4.53161 4.61793 4.68585 4.76861 4.79399 4.91048 5.00129 5.06341 5.14574 5.24481 5.33784 5.40195 5.47691 5.53908 5.65410 5.80504 5.87991 5.93733 6.02775 6.17837 6.22314 6.34827 6.49341 6.64377 6.86791 6.99540 7.59803 9.06194 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019717 B = 0.010953 C = 0.009018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.769432 B = 2555.680573 C = 3104.058034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.091 3.909 3 H 0.036 0.964 4 C 0.011 3.989 5 C -0.490 4.490 6 H 0.055 0.945 7 C 0.042 3.958 8 N -0.921 5.921 9 Si 0.903 3.097 10 H -0.302 1.302 11 H -0.294 1.294 12 H -0.239 1.239 13 N -0.497 5.497 14 C 0.068 3.932 15 C 0.065 3.935 16 H 0.060 0.940 17 N -0.833 5.833 18 C -0.096 4.096 19 C -0.134 4.134 20 C -0.121 4.121 21 C -0.149 4.149 22 C -0.119 4.119 23 C -0.050 4.050 24 C 0.148 3.852 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.052 0.948 28 H -0.010 1.010 29 H 0.027 0.973 30 H 0.254 0.746 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.348 0.652 34 H 0.350 0.650 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.245 3.814 -12.960 13.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.014 4.014 3 H 0.054 0.946 4 C -0.026 4.026 5 C -0.528 4.528 6 H 0.073 0.927 7 C -0.157 4.157 8 N -0.562 5.562 9 Si 0.732 3.268 10 H -0.230 1.230 11 H -0.220 1.220 12 H -0.162 1.162 13 N -0.214 5.214 14 C -0.060 4.060 15 C -0.048 4.048 16 H 0.078 0.922 17 N -0.363 5.363 18 C -0.135 4.135 19 C -0.138 4.138 20 C -0.140 4.140 21 C -0.167 4.167 22 C -0.138 4.138 23 C -0.070 4.070 24 C 0.052 3.948 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.008 0.992 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.116 0.884 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.831 3.569 -12.623 13.144 hybrid contribution 2.640 0.005 1.068 2.848 sum 1.809 3.574 -11.556 12.230 Atomic orbital electron populations 1.21741 0.93675 1.01815 1.01482 1.21745 0.95338 0.95076 0.89233 0.94578 1.19635 0.95196 0.96438 0.91353 1.21303 0.93166 1.25969 1.12340 0.92725 1.25118 0.99617 0.95307 0.95622 1.70037 1.36377 1.31818 1.18002 0.86416 0.84825 0.76360 0.79237 1.22979 1.22002 1.16224 1.58879 1.23933 1.32934 1.05692 1.22211 0.98735 0.92253 0.92773 1.21888 0.94626 0.92298 0.96021 0.92199 1.58853 1.54358 1.17109 1.05963 1.21286 0.99190 0.93913 0.99159 1.19718 0.92427 0.97768 1.03855 1.20779 0.96950 0.96222 1.00058 1.20811 0.97222 0.98095 1.00598 1.20561 0.93086 1.00292 0.99829 1.20648 0.97118 0.94008 0.95187 1.17991 0.87751 0.93274 0.95764 0.92542 0.91478 0.92847 0.99157 0.95530 0.93737 0.89041 0.89960 0.83853 0.83669 0.89542 0.91449 0.86297 0.86950 0.88427 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 9.37 71.98 0.67 -3.60 16 2 C 0.09 3.61 2.26 44.91 0.10 3.71 16 3 H 0.04 1.49 6.09 -2.38 -0.01 1.48 16 4 C 0.01 0.52 3.98 29.85 0.12 0.64 16 5 C -0.49 -25.44 5.19 25.60 0.13 -25.31 16 6 H 0.05 2.86 5.72 -2.91 -0.02 2.84 16 7 C 0.04 2.26 3.80 84.65 0.32 2.58 16 8 N -0.92 -53.37 13.29 21.45 0.28 -53.08 16 9 Si 0.90 43.91 27.04 68.60 1.85 45.77 16 10 H -0.30 -15.01 7.11 99.48 0.71 -14.31 16 11 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 12 H -0.24 -10.84 5.84 99.48 0.58 -10.26 16 13 N -0.50 -18.20 4.37 -671.96 -2.94 -21.14 16 14 C 0.07 1.99 5.29 86.52 0.46 2.44 16 15 C 0.07 1.83 3.29 45.05 0.15 1.97 16 16 H 0.06 2.08 6.34 -2.39 -0.02 2.06 16 17 N -0.83 -17.43 9.28 -168.09 -1.56 -18.99 16 18 C -0.10 -2.78 5.41 29.90 0.16 -2.61 16 19 C -0.13 -4.96 4.18 -19.71 -0.08 -5.04 16 20 C -0.12 -4.52 8.74 22.32 0.20 -4.33 16 21 C -0.15 -5.88 7.50 22.24 0.17 -5.72 16 22 C -0.12 -5.14 7.99 22.18 0.18 -4.96 16 23 C -0.05 -2.22 6.06 22.50 0.14 -2.09 16 24 C 0.15 5.98 3.27 38.31 0.13 6.10 16 25 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 26 H 0.07 1.87 7.20 -2.39 -0.02 1.86 16 27 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 28 H -0.01 -0.53 8.12 -2.38 -0.02 -0.55 16 29 H 0.03 1.41 5.08 -2.39 -0.01 1.40 16 30 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 31 H 0.09 2.50 7.05 -2.38 -0.02 2.48 16 32 H 0.08 2.19 8.11 -2.39 -0.02 2.17 16 33 H 0.35 6.37 9.05 -89.69 -0.81 5.56 16 34 H 0.35 5.88 8.99 -89.69 -0.81 5.07 16 35 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.12 3.84 8.06 -2.91 -0.02 3.82 16 38 H 0.11 4.02 8.06 -2.91 -0.02 4.00 16 39 H 0.10 4.21 8.06 -2.91 -0.02 4.18 16 40 H 0.10 4.61 6.15 -2.91 -0.02 4.59 16 Total: -1.00 -59.64 293.29 -0.21 -59.85 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -0.69 Total: 23.80 kcal Atomic # 6 Polarization: -39.03 SS G_CDS: 2.83 Total: -36.20 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -4.21 Total: -93.21 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.85 Total: 45.77 kcal Total: -59.64 -0.21 -59.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.241 kcal (2) G-P(sol) polarization free energy of solvation -59.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds