Wall clock time and date at job start Mon Mar 30 2020 06:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47187 * 2 1 4 4 C 1.52995 * 109.47437 * 239.99514 * 2 1 3 5 5 C 1.50707 * 109.47192 * 60.00080 * 4 2 1 6 6 H 1.08007 * 119.99538 * 5.70995 * 5 4 2 7 7 C 1.37867 * 120.00313 * 185.71481 * 5 4 2 8 8 N 1.31519 * 120.00036 * 354.70570 * 7 5 4 9 9 Si 1.86800 * 120.00328 * 174.70759 * 7 5 4 10 10 H 1.48505 * 109.47218 * 64.99750 * 9 7 5 11 11 H 1.48502 * 109.47444 * 184.99980 * 9 7 5 12 12 H 1.48507 * 109.46780 * 305.00039 * 9 7 5 13 13 N 1.46903 * 109.46765 * 119.99516 * 2 1 3 14 14 C 1.46428 * 111.00245 * 299.23015 * 13 2 1 15 15 C 1.53380 * 108.65571 * 287.86134 * 14 13 2 16 16 H 1.09005 * 109.76783 * 51.43512 * 15 14 13 17 17 N 1.46902 * 109.76978 * 172.16571 * 15 14 13 18 18 C 1.53044 * 107.97967 * 291.80334 * 15 14 13 19 19 C 1.50827 * 109.64720 * 47.22477 * 18 15 14 20 20 C 1.38617 * 118.11063 * 164.72268 * 19 18 15 21 21 C 1.38048 * 120.48929 * 179.41585 * 20 19 18 22 22 C 1.38312 * 119.88913 * 359.97438 * 21 20 19 23 23 C 1.37808 * 119.95420 * 0.14226 * 22 21 20 24 24 C 1.38378 * 122.03186 * 344.39089 * 19 18 15 25 25 H 1.08997 * 109.47279 * 300.00099 * 1 2 3 26 26 H 1.08999 * 109.46796 * 60.00314 * 1 2 3 27 27 H 1.09001 * 109.46665 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47400 * 179.97438 * 4 2 1 29 29 H 1.09000 * 109.47330 * 300.00399 * 4 2 1 30 30 H 0.96998 * 120.00140 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.60667 * 168.10834 * 14 13 2 32 32 H 1.08995 * 109.60770 * 47.60925 * 14 13 2 33 33 H 1.00896 * 110.99574 * 179.26572 * 17 15 14 34 34 H 1.00897 * 110.99622 * 303.21894 * 17 15 14 35 35 H 1.08998 * 109.44335 * 167.33704 * 18 15 14 36 36 H 1.09001 * 109.43515 * 287.22345 * 18 15 14 37 37 H 1.07998 * 119.75533 * 359.39484 * 20 19 18 38 38 H 1.08001 * 120.05973 * 180.02562 * 21 20 19 39 39 H 1.08001 * 120.02564 * 180.11592 * 22 21 20 40 40 H 1.07996 * 119.79299 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4797 6 1 0.9950 0.9178 -2.3833 7 6 1.7710 -0.5468 -3.7284 8 7 2.5199 -1.6206 -3.8539 9 14 1.0236 0.2526 -5.2423 10 1 1.6025 1.6081 -5.4233 11 1 1.3212 -0.5765 -6.4379 12 1 -0.4474 0.3616 -5.0692 13 7 2.0196 -0.6924 1.1995 14 6 1.5652 -0.0178 2.4171 15 6 2.3387 1.2981 2.5668 16 1 2.2771 1.8694 1.6405 17 7 1.7745 2.0831 3.6730 18 6 3.7997 0.9557 2.8675 19 6 4.2799 -0.1044 1.9081 20 6 5.6453 -0.3186 1.8014 21 6 6.1381 -1.2848 0.9475 22 6 5.2655 -2.0468 0.1919 23 6 3.9069 -1.8380 0.2908 24 6 3.4028 -0.8599 1.1501 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1301 -0.7209 -1.2493 29 1 1.6767 -1.7490 -1.2491 30 1 2.6843 -1.9974 -4.7324 31 1 1.7560 -0.6546 3.2810 32 1 0.4981 0.1916 2.3427 33 1 2.2781 2.9487 3.7956 34 1 0.7905 2.2543 3.5297 35 1 4.4122 1.8506 2.7570 36 1 3.8823 0.5841 3.8889 37 1 6.3286 0.2751 2.3905 38 1 7.2032 -1.4461 0.8701 39 1 5.6485 -2.8046 -0.4755 40 1 3.2279 -2.4342 -0.3007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695834671.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:08 Heat of formation + Delta-G solvation = 31.328662 kcal Electronic energy + Delta-G solvation = -20262.367353 eV Core-core repulsion = 17462.508378 eV Total energy + Delta-G solvation = -2799.858975 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 4.05 seconds Orbital eigenvalues (eV) -40.44514 -36.96492 -35.53783 -33.04891 -31.81336 -30.89221 -29.53469 -27.73856 -26.63442 -24.96827 -23.25431 -21.97481 -21.36855 -20.56375 -18.23240 -16.64277 -16.44662 -15.98281 -15.60806 -14.89236 -14.58899 -14.51869 -13.90939 -13.66494 -13.58716 -13.10894 -12.65227 -12.46140 -12.17519 -12.02155 -11.73126 -11.37056 -11.24196 -11.16769 -10.95926 -10.89173 -10.57954 -10.49930 -10.19574 -10.00682 -9.36433 -9.07453 -8.88890 -8.59497 -8.41804 -8.05475 -7.27819 -6.02928 -4.03581 1.86203 1.95579 3.30412 3.35645 3.37379 4.12100 4.35960 4.43836 4.57329 4.89832 5.03226 5.29080 5.33311 5.37128 5.51133 5.56563 5.72233 5.80836 5.85829 5.95616 5.99156 6.04113 6.21311 6.23361 6.24519 6.34170 6.54819 6.61926 6.80935 6.89997 6.97876 7.04971 7.06751 7.10696 7.34862 7.35792 7.49518 7.71820 7.77777 7.98594 8.04020 8.39036 9.00164 9.58656 11.08260 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019135 B = 0.007290 C = 0.005802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.916832 B = 3839.803446 C = 4824.745196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.087 3.913 3 H 0.033 0.967 4 C 0.023 3.977 5 C -0.519 4.519 6 H 0.054 0.946 7 C 0.061 3.939 8 N -0.890 5.890 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.495 5.495 14 C 0.062 3.938 15 C 0.051 3.949 16 H 0.044 0.956 17 N -0.841 5.841 18 C -0.064 4.064 19 C -0.128 4.128 20 C -0.117 4.117 21 C -0.139 4.139 22 C -0.115 4.115 23 C -0.089 4.089 24 C 0.119 3.881 25 H 0.032 0.968 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.031 0.969 29 H 0.028 0.972 30 H 0.261 0.739 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.338 0.662 34 H 0.341 0.659 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.037 3.788 12.298 13.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.017 4.017 3 H 0.051 0.949 4 C -0.014 4.014 5 C -0.558 4.558 6 H 0.072 0.928 7 C -0.140 4.140 8 N -0.528 5.528 9 Si 0.717 3.283 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.212 5.212 14 C -0.066 4.066 15 C -0.062 4.062 16 H 0.062 0.938 17 N -0.371 5.371 18 C -0.102 4.102 19 C -0.131 4.131 20 C -0.136 4.136 21 C -0.158 4.158 22 C -0.134 4.134 23 C -0.109 4.109 24 C 0.023 3.977 25 H 0.051 0.949 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.031 2.589 12.605 13.028 hybrid contribution -0.177 1.930 -1.705 2.581 sum 1.855 4.519 10.900 11.944 Atomic orbital electron populations 1.21815 0.94831 1.01985 1.00230 1.21921 0.95054 0.95308 0.89396 0.94899 1.19567 0.96828 0.95927 0.89028 1.21107 1.35746 1.07937 0.90993 0.92826 1.24945 0.95084 0.95151 0.98865 1.69952 1.37187 1.21995 1.23708 0.86712 0.79807 0.79271 0.82549 1.20463 1.21242 1.20170 1.58917 1.08441 1.50254 1.03548 1.22220 0.99367 0.92397 0.92603 1.22028 0.95634 0.96145 0.92357 0.93820 1.58720 1.07573 1.24693 1.46120 1.20434 0.94538 0.96746 0.98448 1.19785 0.93640 0.98035 1.01655 1.20731 0.93942 0.99104 0.99840 1.20907 0.99049 0.97626 0.98189 1.20963 0.93276 0.99974 0.99189 1.21415 0.95600 0.96757 0.97112 1.18456 0.87785 0.94830 0.96657 0.94912 0.91063 0.92381 0.95142 0.95352 0.92931 0.90346 0.89924 0.84984 0.84644 0.91551 0.90154 0.87074 0.86858 0.86248 0.84415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.77 37.16 0.33 -2.13 16 2 C 0.09 1.81 2.00 -67.71 -0.14 1.68 16 3 H 0.03 0.71 6.48 -51.93 -0.34 0.38 16 4 C 0.02 0.59 3.08 -27.88 -0.09 0.50 16 5 C -0.52 -14.22 8.25 -34.44 -0.28 -14.50 16 6 H 0.05 1.43 6.95 -52.48 -0.36 1.06 16 7 C 0.06 1.72 5.45 -17.82 -0.10 1.62 16 8 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.50 -9.27 4.44 -163.74 -0.73 -10.00 16 14 C 0.06 0.97 5.23 -3.88 -0.02 0.95 16 15 C 0.05 0.72 3.31 -67.49 -0.22 0.50 16 16 H 0.04 0.71 6.42 -51.93 -0.33 0.37 16 17 N -0.84 -9.39 9.27 -4.48 -0.04 -9.43 16 18 C -0.06 -0.91 5.41 -27.80 -0.15 -1.06 16 19 C -0.13 -2.17 5.74 -104.37 -0.60 -2.77 16 20 C -0.12 -1.84 9.63 -39.51 -0.38 -2.22 16 21 C -0.14 -2.20 10.05 -39.62 -0.40 -2.60 16 22 C -0.12 -2.05 10.03 -39.71 -0.40 -2.45 16 23 C -0.09 -1.79 6.99 -39.23 -0.27 -2.06 16 24 C 0.12 2.29 4.87 -83.85 -0.41 1.88 16 25 H 0.03 0.51 6.18 -51.93 -0.32 0.19 16 26 H 0.07 1.41 6.74 -51.93 -0.35 1.06 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.03 0.82 5.38 -51.93 -0.28 0.54 16 29 H 0.03 0.77 7.35 -51.93 -0.38 0.39 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.08 1.21 8.11 -51.93 -0.42 0.79 16 32 H 0.08 1.20 5.77 -51.93 -0.30 0.90 16 33 H 0.34 3.23 9.05 -39.29 -0.36 2.88 16 34 H 0.34 3.38 9.01 -39.29 -0.35 3.03 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.12 1.94 8.06 -52.49 -0.42 1.51 16 40 H 0.14 3.02 6.16 -52.49 -0.32 2.69 16 LS Contribution 307.16 15.07 4.63 4.63 Total: -1.00 -29.24 307.16 -9.34 -38.58 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -5.79 Total: 7.83 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -3.13 Total: -22.67 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: -0.03 Total: -44.69 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.24 -9.34 -38.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834671.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.910 kcal (2) G-P(sol) polarization free energy of solvation -29.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.05 seconds