Wall clock time and date at job start Mon Mar 30 2020 06:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47187 * 2 1 4 4 C 1.52995 * 109.47437 * 239.99514 * 2 1 3 5 5 C 1.50707 * 109.47192 * 60.00080 * 4 2 1 6 6 H 1.08007 * 119.99538 * 5.70995 * 5 4 2 7 7 C 1.37867 * 120.00313 * 185.71481 * 5 4 2 8 8 N 1.31519 * 120.00036 * 354.70570 * 7 5 4 9 9 Si 1.86800 * 120.00328 * 174.70759 * 7 5 4 10 10 H 1.48505 * 109.47218 * 64.99750 * 9 7 5 11 11 H 1.48502 * 109.47444 * 184.99980 * 9 7 5 12 12 H 1.48507 * 109.46780 * 305.00039 * 9 7 5 13 13 N 1.46903 * 109.46765 * 119.99516 * 2 1 3 14 14 C 1.46428 * 111.00245 * 299.23015 * 13 2 1 15 15 C 1.53380 * 108.65571 * 287.86134 * 14 13 2 16 16 H 1.09005 * 109.76783 * 51.43512 * 15 14 13 17 17 N 1.46902 * 109.76978 * 172.16571 * 15 14 13 18 18 C 1.53044 * 107.97967 * 291.80334 * 15 14 13 19 19 C 1.50827 * 109.64720 * 47.22477 * 18 15 14 20 20 C 1.38617 * 118.11063 * 164.72268 * 19 18 15 21 21 C 1.38048 * 120.48929 * 179.41585 * 20 19 18 22 22 C 1.38312 * 119.88913 * 359.97438 * 21 20 19 23 23 C 1.37808 * 119.95420 * 0.14226 * 22 21 20 24 24 C 1.38378 * 122.03186 * 344.39089 * 19 18 15 25 25 H 1.08997 * 109.47279 * 300.00099 * 1 2 3 26 26 H 1.08999 * 109.46796 * 60.00314 * 1 2 3 27 27 H 1.09001 * 109.46665 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47400 * 179.97438 * 4 2 1 29 29 H 1.09000 * 109.47330 * 300.00399 * 4 2 1 30 30 H 0.96998 * 120.00140 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.60667 * 168.10834 * 14 13 2 32 32 H 1.08995 * 109.60770 * 47.60925 * 14 13 2 33 33 H 1.00896 * 110.99574 * 179.26572 * 17 15 14 34 34 H 1.00897 * 110.99622 * 303.21894 * 17 15 14 35 35 H 1.08998 * 109.44335 * 167.33704 * 18 15 14 36 36 H 1.09001 * 109.43515 * 287.22345 * 18 15 14 37 37 H 1.07998 * 119.75533 * 359.39484 * 20 19 18 38 38 H 1.08001 * 120.05973 * 180.02562 * 21 20 19 39 39 H 1.08001 * 120.02564 * 180.11592 * 22 21 20 40 40 H 1.07996 * 119.79299 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4797 6 1 0.9950 0.9178 -2.3833 7 6 1.7710 -0.5468 -3.7284 8 7 2.5199 -1.6206 -3.8539 9 14 1.0236 0.2526 -5.2423 10 1 1.6025 1.6081 -5.4233 11 1 1.3212 -0.5765 -6.4379 12 1 -0.4474 0.3616 -5.0692 13 7 2.0196 -0.6924 1.1995 14 6 1.5652 -0.0178 2.4171 15 6 2.3387 1.2981 2.5668 16 1 2.2771 1.8694 1.6405 17 7 1.7745 2.0831 3.6730 18 6 3.7997 0.9557 2.8675 19 6 4.2799 -0.1044 1.9081 20 6 5.6453 -0.3186 1.8014 21 6 6.1381 -1.2848 0.9475 22 6 5.2655 -2.0468 0.1919 23 6 3.9069 -1.8380 0.2908 24 6 3.4028 -0.8599 1.1501 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1301 -0.7209 -1.2493 29 1 1.6767 -1.7490 -1.2491 30 1 2.6843 -1.9974 -4.7324 31 1 1.7560 -0.6546 3.2810 32 1 0.4981 0.1916 2.3427 33 1 2.2781 2.9487 3.7956 34 1 0.7905 2.2543 3.5297 35 1 4.4122 1.8506 2.7570 36 1 3.8823 0.5841 3.8889 37 1 6.3286 0.2751 2.3905 38 1 7.2032 -1.4461 0.8701 39 1 5.6485 -2.8046 -0.4755 40 1 3.2279 -2.4342 -0.3007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695834671.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:06 Heat of formation + Delta-G solvation = 12.219009 kcal Electronic energy + Delta-G solvation = -20263.196009 eV Core-core repulsion = 17462.508378 eV Total energy + Delta-G solvation = -2800.687632 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.81116 -38.31382 -36.92517 -34.91687 -33.19168 -32.41935 -31.01692 -28.91798 -28.43430 -26.46665 -24.96599 -23.26361 -22.79044 -22.10103 -19.62615 -18.62826 -17.79053 -17.24074 -16.98221 -16.48673 -16.08659 -15.92828 -15.42274 -15.01583 -14.97244 -14.39424 -14.06215 -13.94856 -13.75940 -13.50264 -13.39354 -12.97830 -12.81624 -12.72160 -12.48815 -12.43080 -12.24190 -12.05947 -11.74709 -11.60194 -11.21155 -10.98036 -10.53994 -10.16900 -9.68279 -9.46331 -8.69877 -8.18104 -6.26558 0.50236 0.58249 1.38309 1.40564 1.48367 2.39132 2.77552 3.05359 3.15534 3.47169 3.75056 3.83788 4.04655 4.13525 4.24288 4.28923 4.31379 4.41062 4.53452 4.60174 4.65038 4.75853 4.81066 4.85103 4.98916 5.05443 5.08945 5.21709 5.24776 5.34759 5.49139 5.54761 5.59033 5.67919 5.75701 5.80664 6.00304 6.11518 6.21365 6.31699 6.56740 6.64476 6.87181 7.40071 8.93360 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019135 B = 0.007290 C = 0.005802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.916832 B = 3839.803446 C = 4824.745196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.100 3.900 3 H 0.024 0.976 4 C 0.037 3.963 5 C -0.535 4.535 6 H 0.059 0.941 7 C 0.006 3.994 8 N -0.926 5.926 9 Si 0.957 3.043 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.265 1.265 13 N -0.505 5.505 14 C 0.062 3.938 15 C 0.061 3.939 16 H 0.023 0.977 17 N -0.833 5.833 18 C -0.060 4.060 19 C -0.132 4.132 20 C -0.114 4.114 21 C -0.134 4.134 22 C -0.130 4.130 23 C -0.119 4.119 24 C 0.096 3.904 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.006 0.994 29 H -0.006 1.006 30 H 0.262 0.738 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.351 0.649 34 H 0.350 0.650 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.123 0.877 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.344 5.953 13.876 15.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.005 4.005 3 H 0.042 0.958 4 C 0.000 4.000 5 C -0.574 4.574 6 H 0.077 0.923 7 C -0.192 4.192 8 N -0.566 5.566 9 Si 0.782 3.218 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.190 1.190 13 N -0.222 5.222 14 C -0.065 4.065 15 C -0.052 4.052 16 H 0.041 0.959 17 N -0.365 5.365 18 C -0.098 4.098 19 C -0.136 4.136 20 C -0.133 4.133 21 C -0.153 4.153 22 C -0.149 4.149 23 C -0.139 4.139 24 C -0.001 4.001 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.024 0.976 29 H 0.012 0.988 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.166 0.834 38 H 0.165 0.835 39 H 0.141 0.859 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.329 4.772 14.209 15.168 hybrid contribution -0.198 1.220 -2.131 2.463 sum 2.131 5.991 12.078 13.649 Atomic orbital electron populations 1.21725 0.93263 1.01719 1.01406 1.21597 0.96157 0.94056 0.88666 0.95761 1.19306 0.95250 0.94354 0.91046 1.21527 1.35559 1.08215 0.92086 0.92288 1.25846 0.95434 0.95739 1.02225 1.70104 1.38546 1.23553 1.24397 0.85627 0.79363 0.78389 0.78444 1.19611 1.20988 1.18998 1.58791 1.08740 1.50840 1.03839 1.22293 1.00101 0.93114 0.91007 1.21793 0.95674 0.95369 0.92412 0.95930 1.58655 1.08316 1.25284 1.44204 1.20474 0.94678 0.96506 0.98109 1.20170 0.94080 0.98011 1.01308 1.21198 0.93977 0.98731 0.99353 1.21283 1.00378 0.96631 0.96971 1.21148 0.92825 1.00884 1.00032 1.21286 0.96243 0.97954 0.98371 1.18611 0.88352 0.95492 0.97621 0.91278 0.92255 0.93327 0.97557 0.98793 0.92950 0.90035 0.88902 0.83547 0.83605 0.89695 0.88847 0.83364 0.83496 0.85855 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.64 8.77 71.98 0.63 -4.01 16 2 C 0.10 4.27 2.00 44.91 0.09 4.36 16 3 H 0.02 1.07 6.48 -2.39 -0.02 1.06 16 4 C 0.04 1.99 3.08 29.85 0.09 2.09 16 5 C -0.54 -30.24 8.25 25.60 0.21 -30.03 16 6 H 0.06 3.19 6.95 -2.91 -0.02 3.17 16 7 C 0.01 0.34 5.45 84.65 0.46 0.80 16 8 N -0.93 -56.33 13.29 21.44 0.29 -56.05 16 9 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 13 N -0.51 -19.28 4.44 -671.96 -2.98 -22.26 16 14 C 0.06 1.85 5.23 86.52 0.45 2.30 16 15 C 0.06 1.58 3.31 45.06 0.15 1.73 16 16 H 0.02 0.70 6.42 -2.38 -0.02 0.68 16 17 N -0.83 -15.86 9.27 -168.08 -1.56 -17.42 16 18 C -0.06 -1.54 5.41 29.90 0.16 -1.38 16 19 C -0.13 -4.30 5.74 -19.70 -0.11 -4.41 16 20 C -0.11 -3.28 9.63 22.32 0.21 -3.06 16 21 C -0.13 -4.04 10.05 22.24 0.22 -3.82 16 22 C -0.13 -4.79 10.03 22.19 0.22 -4.57 16 23 C -0.12 -5.07 6.99 22.50 0.16 -4.92 16 24 C 0.10 3.75 4.87 38.30 0.19 3.93 16 25 H 0.07 2.05 6.18 -2.39 -0.01 2.04 16 26 H 0.06 2.34 6.74 -2.39 -0.02 2.33 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.01 0.37 5.38 -2.39 -0.01 0.36 16 29 H -0.01 -0.37 7.35 -2.39 -0.02 -0.39 16 30 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.08 2.39 8.11 -2.39 -0.02 2.37 16 32 H 0.09 2.51 5.77 -2.39 -0.01 2.49 16 33 H 0.35 5.44 9.05 -89.70 -0.81 4.63 16 34 H 0.35 5.80 9.01 -89.70 -0.81 5.00 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 38 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 39 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 40 H 0.10 4.90 6.16 -2.91 -0.02 4.88 16 Total: -1.00 -65.93 307.16 0.35 -65.57 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: -0.56 Total: 24.81 kcal Atomic # 6 Polarization: -44.13 SS G_CDS: 3.14 Total: -40.99 kcal Atomic # 7 Polarization: -91.47 SS G_CDS: -4.25 Total: -95.73 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -65.93 0.35 -65.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834671.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.792 kcal (2) G-P(sol) polarization free energy of solvation -65.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds