Wall clock time and date at job start Mon Mar 30 2020 06:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47302 * 2 1 4 4 C 1.53000 * 109.47531 * 120.00512 * 2 1 3 5 5 C 1.50694 * 109.47216 * 181.87242 * 4 2 1 6 6 H 1.08003 * 120.00228 * 355.05969 * 5 4 2 7 7 C 1.37879 * 120.00057 * 175.05577 * 5 4 2 8 8 N 1.31512 * 119.99609 * 5.11143 * 7 5 4 9 9 Si 1.86798 * 120.00183 * 185.10637 * 7 5 4 10 10 H 1.48501 * 109.46941 * 94.99700 * 9 7 5 11 11 H 1.48495 * 109.47133 * 214.99683 * 9 7 5 12 12 H 1.48508 * 109.47010 * 334.99869 * 9 7 5 13 13 N 1.46900 * 109.46612 * 240.00590 * 2 1 3 14 14 C 1.46968 * 111.00378 * 316.33297 * 13 2 1 15 15 C 1.51619 * 111.01301 * 210.06321 * 14 13 2 16 16 N 1.45683 * 113.95079 * 292.75728 * 15 14 13 17 17 C 1.46743 * 112.51474 * 67.92157 * 16 15 14 18 18 C 1.51457 * 108.29063 * 275.86607 * 17 16 15 19 19 C 1.38113 * 119.88765 * 249.03533 * 18 17 16 20 20 C 1.38380 * 119.67816 * 180.54946 * 19 18 17 21 21 C 1.38306 * 120.18440 * 359.97438 * 20 19 18 22 22 C 1.38164 * 120.18057 * 359.85875 * 21 20 19 23 23 C 1.37991 * 119.77957 * 69.33015 * 18 17 16 24 24 H 1.09006 * 109.46759 * 188.23226 * 1 2 3 25 25 H 1.08999 * 109.47066 * 308.22736 * 1 2 3 26 26 H 1.09000 * 109.47473 * 68.23029 * 1 2 3 27 27 H 1.08998 * 109.47096 * 301.87450 * 4 2 1 28 28 H 1.09008 * 109.46736 * 61.87280 * 4 2 1 29 29 H 0.97006 * 119.99222 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.17467 * 89.66318 * 14 13 2 31 31 H 1.09001 * 109.16968 * 330.45406 * 14 13 2 32 32 H 1.09000 * 108.56729 * 53.86758 * 15 14 13 33 33 H 1.08999 * 108.56611 * 171.64589 * 15 14 13 34 34 H 1.00894 * 111.00278 * 192.72561 * 16 15 14 35 35 H 1.08999 * 109.74832 * 156.15457 * 17 16 15 36 36 H 1.09005 * 109.70550 * 35.54526 * 17 16 15 37 37 H 1.08004 * 120.16468 * 0.56475 * 19 18 17 38 38 H 1.07998 * 119.90554 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.90862 * 179.87645 * 21 20 19 40 40 H 1.07996 * 120.21056 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5463 -0.6812 1.2725 6 1 4.0884 -0.2614 0.4380 7 6 4.2325 -1.1805 2.3592 8 7 3.5795 -1.7819 3.3294 9 14 6.0896 -1.0026 2.4534 10 1 6.4315 0.2085 3.2419 11 1 6.6690 -2.2013 3.1111 12 1 6.6447 -0.8734 1.0820 13 7 2.0196 -0.6924 -1.1995 14 6 1.2594 -1.9265 -1.4426 15 6 2.1203 -2.9692 -2.1285 16 7 2.5037 -2.6175 -3.4892 17 6 3.4277 -1.4784 -3.5360 18 6 2.6127 -0.2028 -3.4854 19 6 2.5405 0.6123 -4.5980 20 6 1.8039 1.7825 -4.5434 21 6 1.1425 2.1343 -3.3808 22 6 1.2113 1.3178 -2.2684 23 6 1.9505 0.1419 -2.3249 24 1 -0.3633 -1.0172 0.1472 25 1 -0.3633 0.6359 0.8073 26 1 -0.3634 0.3811 -0.9544 27 1 1.6496 -0.2274 2.1389 28 1 1.7044 -1.7583 1.2324 29 1 4.0623 -2.1335 4.0938 30 1 0.4006 -1.6995 -2.0743 31 1 0.9071 -2.3233 -0.4904 32 1 3.0257 -3.1139 -1.5392 33 1 1.5707 -3.9101 -2.1550 34 1 2.8917 -3.4135 -3.9728 35 1 4.0041 -1.5095 -4.4606 36 1 4.1024 -1.5171 -2.6807 37 1 3.0563 0.3377 -5.5064 38 1 1.7447 2.4224 -5.4114 39 1 0.5705 3.0496 -3.3425 40 1 0.6947 1.5918 -1.3604 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695834817.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:38 Heat of formation + Delta-G solvation = 44.461253 kcal Electronic energy + Delta-G solvation = -20393.921732 eV Core-core repulsion = 17594.632229 eV Total energy + Delta-G solvation = -2799.289503 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.30268 -36.99301 -35.98080 -32.91743 -31.34126 -30.86043 -29.96469 -27.39766 -26.59021 -25.12925 -23.18375 -22.14599 -21.15105 -20.23846 -18.72863 -16.93660 -16.34760 -16.15101 -15.16853 -14.86335 -14.48343 -14.34437 -14.25177 -13.97919 -13.51201 -13.27507 -12.54148 -12.27422 -11.97331 -11.83196 -11.62610 -11.49753 -11.25047 -11.18382 -10.97792 -10.75346 -10.71076 -10.56264 -10.30622 -9.93088 -9.33384 -9.10008 -8.78271 -8.45063 -8.28929 -8.17102 -7.28281 -5.93499 -3.90830 1.73106 1.78239 3.35226 3.42040 3.46787 4.01965 4.37305 4.52827 4.66696 5.09784 5.19785 5.37118 5.41631 5.46673 5.48517 5.57464 5.67116 5.74315 5.82957 5.85120 5.93924 5.96002 6.07452 6.16957 6.22094 6.36684 6.40313 6.45054 6.55627 6.72176 6.81512 6.85966 6.96742 7.21948 7.28497 7.46433 7.61404 7.70442 7.83164 8.04500 8.07624 8.53649 9.15393 9.71042 11.18446 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019679 B = 0.006994 C = 0.006669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.489489 B = 4002.495940 C = 4197.276415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.081 3.919 3 H 0.075 0.925 4 C 0.033 3.967 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.052 3.948 8 N -0.902 5.902 9 Si 0.887 3.113 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.465 5.465 14 C 0.069 3.931 15 C 0.064 3.936 16 N -0.693 5.693 17 C 0.106 3.894 18 C -0.086 4.086 19 C -0.096 4.096 20 C -0.154 4.154 21 C -0.108 4.108 22 C -0.176 4.176 23 C 0.129 3.871 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.023 0.977 28 H 0.016 0.984 29 H 0.257 0.743 30 H 0.041 0.959 31 H 0.088 0.912 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.341 0.659 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.781 1.919 -13.862 14.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.026 4.026 3 H 0.093 0.907 4 C -0.004 4.004 5 C -0.531 4.531 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.542 5.542 9 Si 0.716 3.284 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.180 5.180 14 C -0.057 4.057 15 C -0.066 4.066 16 N -0.324 5.324 17 C -0.023 4.023 18 C -0.089 4.089 19 C -0.115 4.115 20 C -0.173 4.173 21 C -0.127 4.127 22 C -0.196 4.196 23 C 0.031 3.969 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.042 0.958 28 H 0.034 0.966 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.159 0.841 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.789 1.998 -13.615 14.570 hybrid contribution 1.112 -0.048 0.431 1.194 sum -3.677 1.949 -13.183 13.824 Atomic orbital electron populations 1.22780 0.98749 1.02188 1.01296 1.22122 0.90753 0.98548 0.91167 0.90684 1.19164 0.96488 0.95092 0.89645 1.21160 0.91426 1.38112 1.02377 0.92173 1.24992 0.97957 0.95654 0.96130 1.69973 1.35395 1.39016 1.09856 0.86651 0.86399 0.77367 0.78015 1.20963 1.21528 1.19956 1.59619 1.52678 1.04741 1.00950 1.21848 0.94104 0.89749 0.99957 1.21424 0.99757 0.97139 0.88232 1.59363 1.46218 1.09271 1.17549 1.20888 0.92295 0.88073 1.01061 1.19429 0.99509 0.97039 0.92881 1.20830 0.99085 0.94487 0.97107 1.20930 1.00624 0.97765 0.97978 1.20949 0.99491 0.98938 0.93292 1.21869 1.00804 0.97201 0.99732 1.18965 0.93713 0.93442 0.90783 0.92456 0.92249 0.92778 0.95832 0.96577 0.93299 0.94067 0.89415 0.93689 0.91333 0.84108 0.91331 0.92106 0.86559 0.86943 0.86885 0.84844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.22 7.54 37.16 0.28 -2.94 16 2 C 0.08 1.64 1.77 -67.71 -0.12 1.52 16 3 H 0.08 1.58 6.80 -51.93 -0.35 1.23 16 4 C 0.03 0.83 4.47 -27.89 -0.12 0.70 16 5 C -0.49 -13.71 8.78 -34.44 -0.30 -14.01 16 6 H 0.06 1.71 7.66 -52.48 -0.40 1.30 16 7 C 0.05 1.49 5.45 -17.82 -0.10 1.40 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 9 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 13 N -0.47 -9.03 3.70 -164.41 -0.61 -9.64 16 14 C 0.07 1.21 4.04 -4.49 -0.02 1.19 16 15 C 0.06 1.02 6.14 -5.18 -0.03 0.99 16 16 N -0.69 -9.90 6.54 -116.45 -0.76 -10.66 16 17 C 0.11 1.61 6.10 -4.69 -0.03 1.58 16 18 C -0.09 -1.42 5.41 -104.39 -0.56 -1.98 16 19 C -0.10 -1.37 9.69 -39.57 -0.38 -1.76 16 20 C -0.15 -2.09 10.04 -39.50 -0.40 -2.49 16 21 C -0.11 -1.54 10.04 -39.58 -0.40 -1.94 16 22 C -0.18 -2.89 7.62 -39.32 -0.30 -3.19 16 23 C 0.13 2.33 4.91 -83.81 -0.41 1.91 16 24 H 0.06 0.95 6.63 -51.93 -0.34 0.61 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.84 5.59 -51.93 -0.29 0.55 16 27 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.02 0.42 6.85 -51.92 -0.36 0.07 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.04 0.70 7.68 -51.93 -0.40 0.31 16 31 H 0.09 1.60 5.42 -51.93 -0.28 1.32 16 32 H 0.04 0.82 7.91 -51.93 -0.41 0.41 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.34 3.95 8.88 -39.29 -0.35 3.60 16 35 H 0.07 0.86 7.93 -51.93 -0.41 0.45 16 36 H 0.06 1.08 7.74 -51.93 -0.40 0.68 16 37 H 0.12 1.37 7.98 -52.48 -0.42 0.96 16 38 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.13 2.14 4.51 -52.49 -0.24 1.90 16 LS Contribution 306.86 15.07 4.62 4.62 Total: -1.00 -30.38 306.86 -9.83 -40.21 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.90 Total: 3.64 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -2.90 Total: -19.02 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: -0.63 Total: -46.47 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.38 -9.83 -40.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834817.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.670 kcal (2) G-P(sol) polarization free energy of solvation -30.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds