Wall clock time and date at job start Mon Mar 30 2020 06:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47302 * 2 1 4 4 C 1.53000 * 109.47531 * 120.00512 * 2 1 3 5 5 C 1.50694 * 109.47216 * 181.87242 * 4 2 1 6 6 H 1.08003 * 120.00228 * 355.05969 * 5 4 2 7 7 C 1.37879 * 120.00057 * 175.05577 * 5 4 2 8 8 N 1.31512 * 119.99609 * 5.11143 * 7 5 4 9 9 Si 1.86798 * 120.00183 * 185.10637 * 7 5 4 10 10 H 1.48501 * 109.46941 * 94.99700 * 9 7 5 11 11 H 1.48495 * 109.47133 * 214.99683 * 9 7 5 12 12 H 1.48508 * 109.47010 * 334.99869 * 9 7 5 13 13 N 1.46900 * 109.46612 * 240.00590 * 2 1 3 14 14 C 1.46968 * 111.00378 * 316.33297 * 13 2 1 15 15 C 1.51619 * 111.01301 * 210.06321 * 14 13 2 16 16 N 1.45683 * 113.95079 * 292.75728 * 15 14 13 17 17 C 1.46743 * 112.51474 * 67.92157 * 16 15 14 18 18 C 1.51457 * 108.29063 * 275.86607 * 17 16 15 19 19 C 1.38113 * 119.88765 * 249.03533 * 18 17 16 20 20 C 1.38380 * 119.67816 * 180.54946 * 19 18 17 21 21 C 1.38306 * 120.18440 * 359.97438 * 20 19 18 22 22 C 1.38164 * 120.18057 * 359.85875 * 21 20 19 23 23 C 1.37991 * 119.77957 * 69.33015 * 18 17 16 24 24 H 1.09006 * 109.46759 * 188.23226 * 1 2 3 25 25 H 1.08999 * 109.47066 * 308.22736 * 1 2 3 26 26 H 1.09000 * 109.47473 * 68.23029 * 1 2 3 27 27 H 1.08998 * 109.47096 * 301.87450 * 4 2 1 28 28 H 1.09008 * 109.46736 * 61.87280 * 4 2 1 29 29 H 0.97006 * 119.99222 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.17467 * 89.66318 * 14 13 2 31 31 H 1.09001 * 109.16968 * 330.45406 * 14 13 2 32 32 H 1.09000 * 108.56729 * 53.86758 * 15 14 13 33 33 H 1.08999 * 108.56611 * 171.64589 * 15 14 13 34 34 H 1.00894 * 111.00278 * 192.72561 * 16 15 14 35 35 H 1.08999 * 109.74832 * 156.15457 * 17 16 15 36 36 H 1.09005 * 109.70550 * 35.54526 * 17 16 15 37 37 H 1.08004 * 120.16468 * 0.56475 * 19 18 17 38 38 H 1.07998 * 119.90554 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.90862 * 179.87645 * 21 20 19 40 40 H 1.07996 * 120.21056 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5463 -0.6812 1.2725 6 1 4.0884 -0.2614 0.4380 7 6 4.2325 -1.1805 2.3592 8 7 3.5795 -1.7819 3.3294 9 14 6.0896 -1.0026 2.4534 10 1 6.4315 0.2085 3.2419 11 1 6.6690 -2.2013 3.1111 12 1 6.6447 -0.8734 1.0820 13 7 2.0196 -0.6924 -1.1995 14 6 1.2594 -1.9265 -1.4426 15 6 2.1203 -2.9692 -2.1285 16 7 2.5037 -2.6175 -3.4892 17 6 3.4277 -1.4784 -3.5360 18 6 2.6127 -0.2028 -3.4854 19 6 2.5405 0.6123 -4.5980 20 6 1.8039 1.7825 -4.5434 21 6 1.1425 2.1343 -3.3808 22 6 1.2113 1.3178 -2.2684 23 6 1.9505 0.1419 -2.3249 24 1 -0.3633 -1.0172 0.1472 25 1 -0.3633 0.6359 0.8073 26 1 -0.3634 0.3811 -0.9544 27 1 1.6496 -0.2274 2.1389 28 1 1.7044 -1.7583 1.2324 29 1 4.0623 -2.1335 4.0938 30 1 0.4006 -1.6995 -2.0743 31 1 0.9071 -2.3233 -0.4904 32 1 3.0257 -3.1139 -1.5392 33 1 1.5707 -3.9101 -2.1550 34 1 2.8917 -3.4135 -3.9728 35 1 4.0041 -1.5095 -4.4606 36 1 4.1024 -1.5171 -2.6807 37 1 3.0563 0.3377 -5.5064 38 1 1.7447 2.4224 -5.4114 39 1 0.5705 3.0496 -3.3425 40 1 0.6947 1.5918 -1.3604 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695834817.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:37 Heat of formation + Delta-G solvation = 24.960906 kcal Electronic energy + Delta-G solvation = -20394.767331 eV Core-core repulsion = 17594.632229 eV Total energy + Delta-G solvation = -2800.135101 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.60660 -38.31265 -37.24774 -34.98292 -32.64362 -32.40464 -31.17839 -29.26417 -27.92076 -26.34009 -25.15820 -23.39385 -22.57518 -21.45330 -20.24061 -18.42312 -18.21536 -17.55076 -16.62607 -16.35034 -16.02179 -15.64204 -15.55645 -15.33818 -14.85261 -14.58193 -14.28018 -13.76254 -13.50519 -13.30696 -13.26706 -12.99594 -12.76544 -12.59777 -12.53525 -12.39545 -12.22072 -11.94055 -11.92347 -11.52836 -11.17269 -11.15063 -10.51549 -10.12103 -9.61529 -9.38708 -8.61989 -8.14840 -6.18841 0.57774 0.60880 1.36548 1.37110 1.48690 2.42603 2.83191 3.01424 3.20451 3.46788 3.95604 4.03567 4.08986 4.17227 4.27144 4.32546 4.38062 4.41855 4.48390 4.53546 4.70839 4.75243 4.81666 4.84433 4.86783 5.02740 5.04741 5.12263 5.17262 5.27296 5.40381 5.56724 5.63170 5.71408 5.75430 5.84880 6.03741 6.09563 6.27409 6.42021 6.56841 6.68421 6.93817 7.46663 8.97065 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019679 B = 0.006994 C = 0.006669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.489489 B = 4002.495940 C = 4197.276415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.093 3.907 3 H 0.063 0.937 4 C 0.042 3.958 5 C -0.501 4.501 6 H 0.050 0.950 7 C 0.000 4.000 8 N -0.935 5.935 9 Si 0.951 3.049 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.272 1.272 13 N -0.483 5.483 14 C 0.072 3.928 15 C 0.070 3.930 16 N -0.684 5.684 17 C 0.108 3.892 18 C -0.105 4.105 19 C -0.095 4.095 20 C -0.148 4.148 21 C -0.109 4.109 22 C -0.192 4.192 23 C 0.098 3.902 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.071 0.929 27 H -0.001 1.001 28 H -0.005 1.005 29 H 0.260 0.740 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.013 0.987 33 H 0.092 0.908 34 H 0.358 0.642 35 H 0.099 0.901 36 H 0.026 0.974 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.139 0.861 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.590 2.792 -16.495 17.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.015 4.015 3 H 0.081 0.919 4 C 0.004 3.996 5 C -0.539 4.539 6 H 0.068 0.932 7 C -0.196 4.196 8 N -0.577 5.577 9 Si 0.778 3.222 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.196 1.196 13 N -0.199 5.199 14 C -0.053 4.053 15 C -0.060 4.060 16 N -0.317 5.317 17 C -0.021 4.021 18 C -0.108 4.108 19 C -0.114 4.114 20 C -0.166 4.166 21 C -0.128 4.128 22 C -0.212 4.212 23 C 0.001 3.999 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.017 0.983 28 H 0.014 0.986 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.032 0.968 33 H 0.110 0.890 34 H 0.178 0.822 35 H 0.118 0.882 36 H 0.044 0.956 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.157 0.843 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.598 2.872 -16.271 17.151 hybrid contribution 1.032 -0.280 1.175 1.588 sum -3.567 2.592 -15.097 15.727 Atomic orbital electron populations 1.22630 0.96116 1.02447 1.02538 1.21760 0.92779 0.97009 0.89918 0.91874 1.18988 0.95178 0.94137 0.91266 1.21400 0.92963 1.37566 1.01981 0.93163 1.25780 1.02573 0.95396 0.95875 1.70086 1.37181 1.39962 1.10463 0.85637 0.80937 0.77614 0.78057 1.20133 1.20891 1.19644 1.59544 1.53502 1.05531 1.01324 1.21818 0.94512 0.89678 0.99327 1.21336 0.98405 0.97629 0.88625 1.59332 1.46113 1.09909 1.16330 1.20872 0.91957 0.88179 1.01046 1.19697 0.99804 0.98007 0.93243 1.21191 0.98779 0.94140 0.97266 1.21366 0.98994 0.97603 0.98661 1.21291 0.99356 0.99366 0.92750 1.21951 1.01312 0.97339 1.00635 1.19160 0.95677 0.94186 0.90903 0.92543 0.91541 0.91011 0.98272 0.98638 0.93148 0.93535 0.91110 0.96839 0.88982 0.82187 0.88232 0.95619 0.83675 0.83552 0.84288 0.85241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.10 7.54 71.98 0.54 -5.55 16 2 C 0.09 3.90 1.77 44.92 0.08 3.98 16 3 H 0.06 2.76 6.80 -2.39 -0.02 2.74 16 4 C 0.04 2.18 4.47 29.85 0.13 2.31 16 5 C -0.50 -28.92 8.78 25.60 0.22 -28.70 16 6 H 0.05 2.95 7.66 -2.91 -0.02 2.93 16 7 C 0.00 0.02 5.45 84.66 0.46 0.48 16 8 N -0.94 -57.32 13.29 21.45 0.29 -57.04 16 9 Si 0.95 46.04 29.54 68.60 2.03 48.07 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 13 N -0.48 -19.27 3.70 -674.06 -2.49 -21.77 16 14 C 0.07 2.59 4.04 85.84 0.35 2.94 16 15 C 0.07 2.24 6.14 86.08 0.53 2.77 16 16 N -0.68 -18.70 6.54 -522.34 -3.41 -22.11 16 17 C 0.11 3.18 6.10 85.83 0.52 3.71 16 18 C -0.10 -3.30 5.41 -19.71 -0.11 -3.41 16 19 C -0.09 -2.39 9.69 22.27 0.22 -2.18 16 20 C -0.15 -3.43 10.04 22.32 0.22 -3.21 16 21 C -0.11 -2.81 10.04 22.27 0.22 -2.59 16 22 C -0.19 -6.13 7.62 22.44 0.17 -5.96 16 23 C 0.10 3.50 4.91 37.92 0.19 3.69 16 24 H 0.06 1.91 6.63 -2.38 -0.02 1.90 16 25 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.07 2.19 5.59 -2.39 -0.01 2.18 16 27 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 28 H 0.00 -0.26 6.85 -2.38 -0.02 -0.28 16 29 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 30 H 0.05 1.59 7.68 -2.39 -0.02 1.57 16 31 H 0.07 2.71 5.42 -2.39 -0.01 2.70 16 32 H 0.01 0.51 7.91 -2.39 -0.02 0.49 16 33 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.36 7.61 8.88 -89.70 -0.80 6.81 16 35 H 0.10 2.24 7.93 -2.39 -0.02 2.22 16 36 H 0.03 0.93 7.74 -2.38 -0.02 0.92 16 37 H 0.15 2.76 7.98 -2.91 -0.02 2.74 16 38 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 40 H 0.13 4.10 4.51 -2.91 -0.01 4.09 16 Total: -1.00 -67.12 306.86 0.40 -66.73 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.24 Total: 17.84 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 3.76 Total: -31.72 kcal Atomic # 7 Polarization: -95.29 SS G_CDS: -5.62 Total: -100.92 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -67.12 0.40 -66.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834817.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.686 kcal (2) G-P(sol) polarization free energy of solvation -67.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds