Wall clock time and date at job start Mon Mar 30 2020 06:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46917 * 2 1 4 4 C 1.53000 * 109.47192 * 239.99747 * 2 1 3 5 5 C 1.50699 * 109.46982 * 173.55279 * 4 2 1 6 6 H 1.08007 * 119.99951 * 3.93940 * 5 4 2 7 7 C 1.37876 * 119.99955 * 183.94075 * 5 4 2 8 8 N 1.31510 * 119.99860 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99847 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46769 * 90.00411 * 9 7 5 11 11 H 1.48496 * 109.46902 * 209.99904 * 9 7 5 12 12 H 1.48499 * 109.47389 * 330.00278 * 9 7 5 13 13 N 1.46902 * 109.47209 * 119.99563 * 2 1 3 14 14 C 1.46421 * 110.99994 * 73.24503 * 13 2 1 15 15 C 1.53368 * 108.66496 * 178.87142 * 14 13 2 16 16 C 1.53041 * 107.93615 * 291.73796 * 15 14 13 17 17 C 1.50810 * 109.68399 * 47.43952 * 16 15 14 18 18 C 1.38615 * 118.05574 * 164.49956 * 17 16 15 19 19 C 1.38621 * 120.43415 * 179.41752 * 18 17 16 20 20 N 1.40002 * 120.13595 * 180.02562 * 19 18 17 21 21 C 1.38890 * 119.73021 * 359.97438 * 19 18 17 22 22 C 1.37783 * 119.86921 * 0.37310 * 21 19 18 23 23 C 1.38335 * 122.01405 * 344.14307 * 17 16 15 24 24 H 1.09003 * 109.47484 * 60.00012 * 1 2 3 25 25 H 1.08998 * 109.47111 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47671 * 300.00035 * 1 2 3 27 27 H 1.08995 * 109.47023 * 293.55256 * 4 2 1 28 28 H 1.09004 * 109.46768 * 53.55432 * 4 2 1 29 29 H 0.97007 * 120.00014 * 180.02562 * 8 7 5 30 30 H 1.09007 * 109.60084 * 298.62341 * 14 13 2 31 31 H 1.08996 * 109.60275 * 59.11188 * 14 13 2 32 32 H 1.08998 * 109.76675 * 51.34165 * 15 14 13 33 33 H 1.08994 * 109.76923 * 172.07445 * 15 14 13 34 34 H 1.09009 * 109.43097 * 287.37622 * 16 15 14 35 35 H 1.08997 * 109.43517 * 167.51277 * 16 15 14 36 36 H 1.08002 * 119.78601 * 359.43664 * 18 17 16 37 37 H 0.97000 * 120.00195 * 179.97438 * 20 19 18 38 38 H 0.97005 * 119.99815 * 359.97438 * 20 19 18 39 39 H 1.07995 * 120.06223 * 180.08964 * 21 19 18 40 40 H 1.08003 * 119.73564 * 179.76344 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5385 -0.5846 -1.3315 6 1 4.0804 -0.0932 -0.5369 7 6 4.2177 -1.0868 -2.4212 8 7 3.5578 -1.6847 -3.3889 9 14 6.0752 -0.9168 -2.5236 10 1 6.7159 -2.0986 -1.8927 11 1 6.4867 -0.8320 -3.9478 12 1 6.4995 0.3154 -1.8115 13 7 2.0197 -0.6924 1.1995 14 6 1.8231 -2.1390 1.0873 15 6 2.3766 -2.8090 2.3510 16 6 3.8987 -2.6506 2.3403 17 6 4.2585 -1.2212 2.0215 18 6 5.5533 -0.8009 2.2827 19 6 5.9406 0.4992 1.9975 20 7 7.2501 0.9168 2.2635 21 6 5.0245 1.3855 1.4459 22 6 3.7353 0.9706 1.1926 23 6 3.3430 -0.3385 1.4770 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.7740 -1.7768 -1.1933 28 1 1.5855 -0.2784 -2.1355 29 1 4.0357 -2.0384 -4.1555 30 1 0.7592 -2.3573 0.9937 31 1 2.3541 -2.5135 0.2122 32 1 1.9620 -2.3262 3.2360 33 1 2.1153 -3.8672 2.3519 34 1 4.3266 -3.3095 1.5845 35 1 4.2979 -2.9155 3.3193 36 1 6.2652 -1.4910 2.7110 37 1 7.5191 1.8269 2.0628 38 1 7.8884 0.2961 2.6484 39 1 5.3209 2.3992 1.2203 40 1 3.0236 1.6627 0.7672 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695834979.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:07 Heat of formation + Delta-G solvation = 13.705749 kcal Electronic energy + Delta-G solvation = -20761.897106 eV Core-core repulsion = 17961.273944 eV Total energy + Delta-G solvation = -2800.623162 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 3.07 seconds Orbital eigenvalues (eV) -41.59626 -38.60628 -36.20316 -34.51686 -34.44093 -31.97903 -30.62244 -29.36497 -28.71081 -25.65060 -24.82892 -24.15422 -23.16130 -20.78251 -19.96469 -18.42366 -17.99848 -17.63977 -17.01186 -16.57709 -16.23532 -15.63217 -15.15495 -14.69812 -14.59281 -14.39044 -14.16969 -13.92478 -13.62306 -13.45444 -13.36611 -13.10132 -12.66187 -12.64118 -12.53714 -12.44004 -12.10986 -11.98826 -11.63281 -11.39663 -11.26838 -10.97037 -10.70730 -10.48128 -9.50728 -9.37198 -8.13765 -7.56958 -6.16399 0.69022 0.96744 1.31954 1.33399 1.44563 2.41736 2.93537 3.20836 3.22883 3.42992 3.89847 4.07889 4.11803 4.27705 4.38622 4.45679 4.61004 4.62717 4.67720 4.72706 4.87245 4.93750 5.00694 5.06859 5.10721 5.15134 5.21495 5.33342 5.37601 5.44109 5.45896 5.48502 5.58196 5.73333 5.78473 5.90902 6.03745 6.35419 6.50918 6.65684 6.88216 7.01798 7.19828 7.51333 8.98880 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.012942 B = 0.012540 C = 0.008424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.993812 B = 2232.363129 C = 3323.020378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.075 3.925 3 H 0.078 0.922 4 C 0.003 3.997 5 C -0.518 4.518 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.937 5.937 9 Si 0.935 3.065 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.475 5.475 14 C 0.050 3.950 15 C -0.110 4.110 16 C -0.074 4.074 17 C -0.097 4.097 18 C -0.188 4.188 19 C 0.171 3.829 20 N -0.877 5.877 21 C -0.187 4.187 22 C -0.113 4.113 23 C 0.095 3.905 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.003 0.997 28 H -0.008 1.008 29 H 0.255 0.745 30 H 0.081 0.919 31 H 0.030 0.970 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.401 0.599 38 H 0.402 0.598 39 H 0.127 0.873 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.841 2.030 13.371 13.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.031 4.031 3 H 0.096 0.904 4 C -0.035 4.035 5 C -0.555 4.555 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.579 5.579 9 Si 0.763 3.237 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.190 1.190 13 N -0.189 5.189 14 C -0.077 4.077 15 C -0.147 4.147 16 C -0.111 4.111 17 C -0.100 4.100 18 C -0.212 4.212 19 C 0.067 3.933 20 N -0.420 5.420 21 C -0.210 4.210 22 C -0.134 4.134 23 C -0.004 4.004 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.021 0.979 28 H 0.010 0.990 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.148 0.852 37 H 0.230 0.770 38 H 0.231 0.769 39 H 0.145 0.855 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.460 2.070 13.564 13.799 hybrid contribution 1.715 -0.156 -1.511 2.291 sum 3.175 1.914 12.053 12.611 Atomic orbital electron populations 1.21743 0.93559 1.01756 1.01776 1.22028 0.95484 0.97920 0.87676 0.90406 1.19663 0.95619 0.95141 0.93072 1.22233 0.93452 1.34828 1.05036 0.89203 1.25679 1.01454 0.95864 0.96007 1.70102 1.36654 1.41034 1.10100 0.85861 0.82517 0.78754 0.76607 1.20784 1.21553 1.18950 1.58893 1.16450 1.08992 1.34587 1.22168 1.00962 0.86581 0.97951 1.21655 0.94598 1.01149 0.97310 1.20502 0.96876 0.91848 1.01881 1.19459 0.92801 0.95653 1.02086 1.20468 0.96281 0.95224 1.09187 1.17644 0.86374 0.93107 0.96161 1.42243 1.08883 1.16399 1.74460 1.20503 0.93510 1.00098 1.06872 1.20931 0.96497 0.95521 1.00456 1.18371 0.88713 0.93697 0.99621 0.92340 0.93053 0.91161 0.97926 0.98965 0.93581 0.90083 0.95198 0.90473 0.89178 0.92317 0.88866 0.85230 0.76985 0.76898 0.85464 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 9.26 71.98 0.67 -3.72 16 2 C 0.08 3.08 2.37 44.91 0.11 3.18 16 3 H 0.08 3.23 5.11 -2.39 -0.01 3.22 16 4 C 0.00 0.15 3.95 29.85 0.12 0.27 16 5 C -0.52 -28.64 8.04 25.60 0.21 -28.43 16 6 H 0.09 4.79 3.56 -2.91 -0.01 4.78 16 7 C 0.01 0.37 5.46 84.65 0.46 0.84 16 8 N -0.94 -57.74 13.29 21.45 0.28 -57.46 16 9 Si 0.94 46.49 29.54 68.60 2.03 48.52 16 10 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 11 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 12 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 13 N -0.47 -18.37 4.42 -671.71 -2.97 -21.34 16 14 C 0.05 1.85 4.56 86.52 0.39 2.24 16 15 C -0.11 -3.23 6.19 30.73 0.19 -3.04 16 16 C -0.07 -2.32 5.80 29.90 0.17 -2.15 16 17 C -0.10 -3.58 5.74 -19.72 -0.11 -3.69 16 18 C -0.19 -6.41 9.48 22.45 0.21 -6.20 16 19 C 0.17 5.64 6.76 38.08 0.26 5.90 16 20 N -0.88 -21.38 9.11 -51.35 -0.47 -21.85 16 21 C -0.19 -6.64 9.83 22.32 0.22 -6.42 16 22 C -0.11 -4.44 6.77 22.49 0.15 -4.29 16 23 C 0.10 3.81 3.85 38.23 0.15 3.95 16 24 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.05 1.68 6.85 -2.39 -0.02 1.67 16 26 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.00 0.14 5.89 -2.39 -0.01 0.13 16 28 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 29 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 30 H 0.08 2.74 6.81 -2.38 -0.02 2.72 16 31 H 0.03 1.36 5.79 -2.39 -0.01 1.35 16 32 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.13 3.72 8.06 -2.91 -0.02 3.69 16 37 H 0.40 8.21 8.85 -92.71 -0.82 7.39 16 38 H 0.40 7.97 8.85 -92.70 -0.82 7.15 16 39 H 0.13 3.92 8.06 -2.91 -0.02 3.89 16 40 H 0.12 4.63 5.68 -2.91 -0.02 4.61 16 Total: -1.00 -66.95 304.52 1.49 -65.46 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: -0.57 Total: 28.22 kcal Atomic # 6 Polarization: -44.73 SS G_CDS: 3.19 Total: -41.54 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -3.15 Total: -100.65 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -66.95 1.49 -65.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834979.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.162 kcal (2) G-P(sol) polarization free energy of solvation -66.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.07 seconds