Wall clock time and date at job start Mon Mar 30 2020 06:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47063 * 2 1 4 4 C 1.52995 * 109.47392 * 119.99774 * 2 1 3 5 5 C 1.50701 * 109.47264 * 182.58867 * 4 2 1 6 6 H 1.07995 * 119.99811 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99523 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99538 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00443 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47213 * 89.99904 * 9 7 5 11 11 H 1.48498 * 109.47122 * 210.00372 * 9 7 5 12 12 H 1.48502 * 109.46783 * 329.99718 * 9 7 5 13 13 N 1.46897 * 109.47263 * 240.00275 * 2 1 3 14 14 C 1.46434 * 111.00389 * 96.88637 * 13 2 1 15 15 C 1.53378 * 108.63994 * 287.82841 * 14 13 2 16 16 C 1.53030 * 107.93815 * 291.69080 * 15 14 13 17 17 C 1.50813 * 109.68805 * 47.39125 * 16 15 14 18 18 C 1.38616 * 118.05769 * 164.55317 * 17 16 15 19 19 C 1.38612 * 120.43698 * 179.71118 * 18 17 16 20 20 N 1.39998 * 120.13498 * 179.89958 * 19 18 17 21 21 C 1.38888 * 119.73136 * 359.87951 * 19 18 17 22 22 C 1.37784 * 119.86694 * 0.38863 * 21 19 18 23 23 C 1.38337 * 122.01500 * 344.31680 * 17 16 15 24 24 H 1.08994 * 109.47238 * 307.57339 * 1 2 3 25 25 H 1.09004 * 109.47094 * 67.56894 * 1 2 3 26 26 H 1.08998 * 109.47324 * 187.57257 * 1 2 3 27 27 H 1.09000 * 109.47473 * 302.59419 * 4 2 1 28 28 H 1.09002 * 109.46667 * 62.59185 * 4 2 1 29 29 H 0.96996 * 119.99919 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.60896 * 168.07621 * 14 13 2 31 31 H 1.09005 * 109.74692 * 47.65505 * 14 13 2 32 32 H 1.09000 * 109.76310 * 172.07974 * 15 14 13 33 33 H 1.08995 * 109.81561 * 51.32739 * 15 14 13 34 34 H 1.09009 * 109.43439 * 287.32532 * 16 15 14 35 35 H 1.08994 * 109.43590 * 167.46034 * 16 15 14 36 36 H 1.08003 * 119.77905 * 359.67950 * 18 17 16 37 37 H 0.96999 * 120.00286 * 179.97438 * 20 19 18 38 38 H 0.96994 * 120.00162 * 359.97438 * 20 19 18 39 39 H 1.08000 * 120.06347 * 180.11710 * 21 19 18 40 40 H 1.08007 * 119.73496 * 179.78281 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5457 -0.6658 1.2817 6 1 4.0848 -0.1659 0.4907 7 6 4.2348 -1.2535 2.3213 8 7 5.5488 -1.2048 2.3500 9 14 3.3023 -2.1188 3.6892 10 1 3.1153 -3.5484 3.3333 11 1 4.0743 -2.0204 4.9538 12 1 1.9758 -1.4755 3.8677 13 7 2.0197 -0.6924 -1.1994 14 6 2.3492 0.2629 -2.2592 15 6 1.0441 0.8336 -2.8279 16 6 0.3217 -0.2924 -3.5711 17 6 0.2966 -1.5328 -2.7136 18 6 -0.5814 -2.5477 -3.0609 19 6 -0.6410 -3.7118 -2.3107 20 7 -1.5315 -4.7320 -2.6659 21 6 0.1866 -3.8622 -1.2055 22 6 1.0556 -2.8515 -0.8565 23 6 1.1192 -1.6789 -1.6111 24 1 -0.3633 0.6266 0.8144 25 1 -0.3633 0.3921 -0.9499 26 1 -0.3634 -1.0187 0.1354 27 1 1.6393 -0.2349 2.1386 28 1 1.7151 -1.7614 1.2263 29 1 6.0336 -1.6178 3.0815 30 1 2.9020 -0.2443 -3.0499 31 1 2.9547 1.0719 -1.8505 32 1 1.2674 1.6470 -3.5182 33 1 0.4167 1.2011 -2.0159 34 1 0.8453 -0.5062 -4.5030 35 1 -0.6999 0.0163 -3.7925 36 1 -1.2235 -2.4305 -3.9213 37 1 -1.5714 -5.5459 -2.1398 38 1 -2.1087 -4.6249 -3.4380 39 1 0.1460 -4.7677 -0.6184 40 1 1.6958 -2.9692 0.0055 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695834981.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:15 Heat of formation + Delta-G solvation = 33.751694 kcal Electronic energy + Delta-G solvation = -20322.993412 eV Core-core repulsion = 17523.239507 eV Total energy + Delta-G solvation = -2799.753904 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.47554 -37.46085 -34.56964 -33.36915 -32.40901 -30.81785 -29.47187 -27.89390 -27.75100 -24.36625 -22.85103 -22.47234 -21.54735 -20.29224 -18.66558 -16.79335 -16.59484 -16.34704 -15.86548 -15.11605 -14.44147 -14.17385 -14.07629 -13.61372 -13.21651 -12.94692 -12.73203 -12.44488 -12.37463 -12.25364 -12.09129 -11.66419 -11.52333 -11.44324 -11.10001 -10.71868 -10.41986 -10.26436 -10.02179 -9.85998 -9.66105 -9.47700 -8.97658 -8.39045 -8.30964 -7.98958 -6.67431 -5.87639 -3.81037 1.79218 2.03020 3.38368 3.46026 3.48953 4.03802 4.19311 4.52323 4.57813 4.99846 5.11750 5.19707 5.31733 5.46800 5.53175 5.59414 5.74190 5.79156 5.84869 5.91174 5.96134 5.98866 6.07000 6.21433 6.24301 6.38896 6.45689 6.54727 6.58582 6.65472 6.74200 6.86681 6.99423 7.10731 7.31069 7.45194 7.68188 7.87490 7.92092 7.97881 8.23372 8.75317 9.23272 9.75604 11.26537 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020176 B = 0.007479 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.476584 B = 3743.068160 C = 4596.765747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.103 3.897 3 H 0.072 0.928 4 C -0.009 4.009 5 C -0.488 4.488 6 H 0.076 0.924 7 C 0.062 3.938 8 N -0.909 5.909 9 Si 0.870 3.130 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.268 1.268 13 N -0.472 5.472 14 C 0.062 3.938 15 C -0.168 4.168 16 C -0.073 4.073 17 C -0.086 4.086 18 C -0.188 4.188 19 C 0.186 3.814 20 N -0.888 5.888 21 C -0.185 4.185 22 C -0.072 4.072 23 C 0.090 3.910 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.017 0.983 28 H 0.019 0.981 29 H 0.259 0.741 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.393 0.607 38 H 0.391 0.609 39 H 0.115 0.885 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.241 -1.490 -11.228 18.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.003 4.003 3 H 0.090 0.910 4 C -0.047 4.047 5 C -0.526 4.526 6 H 0.094 0.906 7 C -0.138 4.138 8 N -0.549 5.549 9 Si 0.698 3.302 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.192 1.192 13 N -0.187 5.187 14 C -0.066 4.066 15 C -0.207 4.207 16 C -0.110 4.110 17 C -0.089 4.089 18 C -0.211 4.211 19 C 0.084 3.916 20 N -0.429 5.429 21 C -0.208 4.208 22 C -0.092 4.092 23 C -0.008 4.008 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.127 0.873 37 H 0.221 0.779 38 H 0.218 0.782 39 H 0.133 0.867 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.569 -1.677 -10.939 17.510 hybrid contribution -1.282 -0.575 0.446 1.475 sum -14.851 -2.252 -10.493 18.323 Atomic orbital electron populations 1.22746 0.98394 1.02098 1.01016 1.21758 0.90758 0.97261 0.90475 0.90962 1.19808 0.97853 0.95468 0.91544 1.21023 0.89149 1.34566 1.07893 0.90576 1.24992 0.94634 0.96319 0.97820 1.69912 1.06202 1.46202 1.32603 0.86931 0.80436 0.80513 0.82284 1.20507 1.21698 1.19238 1.58701 1.41123 1.13365 1.05504 1.22209 0.95432 0.95077 0.93926 1.22466 0.99451 0.97814 1.00961 1.20447 1.00494 0.92567 0.97501 1.19632 0.95444 0.95576 0.98281 1.20182 1.04322 0.94202 1.02397 1.17598 0.91067 0.88866 0.94048 1.42378 1.45329 1.19496 1.35702 1.20457 1.00691 1.00650 0.98967 1.21252 0.97169 0.91086 0.99657 1.18282 0.93142 0.93913 0.95505 0.92954 0.92630 0.92328 0.96527 0.96332 0.93122 0.91003 0.90105 0.91517 0.90537 0.91107 0.91422 0.87280 0.77949 0.78160 0.86695 0.84371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 7.82 37.16 0.29 -2.86 16 2 C 0.10 2.04 1.94 -67.72 -0.13 1.91 16 3 H 0.07 1.44 7.44 -51.93 -0.39 1.05 16 4 C -0.01 -0.22 3.51 -27.88 -0.10 -0.32 16 5 C -0.49 -13.77 9.33 -34.44 -0.32 -14.09 16 6 H 0.08 2.33 7.98 -52.49 -0.42 1.91 16 7 C 0.06 1.81 5.47 -17.82 -0.10 1.71 16 8 N -0.91 -28.39 13.96 55.43 0.77 -27.62 16 9 Si 0.87 21.98 27.47 -169.99 -4.67 17.31 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 13 N -0.47 -9.15 4.04 -163.65 -0.66 -9.81 16 14 C 0.06 1.01 5.72 -3.88 -0.02 0.99 16 15 C -0.17 -2.24 5.70 -26.52 -0.15 -2.39 16 16 C -0.07 -0.94 5.72 -27.81 -0.16 -1.10 16 17 C -0.09 -1.33 5.13 -104.39 -0.54 -1.86 16 18 C -0.19 -2.65 9.48 -39.30 -0.37 -3.03 16 19 C 0.19 2.62 6.76 -83.75 -0.57 2.06 16 20 N -0.89 -9.10 9.11 32.41 0.30 -8.81 16 21 C -0.18 -2.93 9.89 -39.51 -0.39 -3.32 16 22 C -0.07 -1.33 8.01 -39.25 -0.31 -1.65 16 23 C 0.09 1.62 3.43 -83.70 -0.29 1.33 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.87 4.53 -51.93 -0.24 0.63 16 26 H 0.06 1.05 6.53 -51.93 -0.34 0.71 16 27 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 28 H 0.02 0.44 4.78 -51.93 -0.25 0.20 16 29 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 31 H 0.08 1.34 7.73 -51.93 -0.40 0.93 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.06 4.90 -51.93 -0.25 0.81 16 34 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 37 H 0.39 3.41 8.85 -40.82 -0.36 3.05 16 38 H 0.39 3.20 8.85 -40.82 -0.36 2.84 16 39 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.14 2.90 5.95 -52.48 -0.31 2.59 16 LS Contribution 303.07 15.07 4.57 4.57 Total: -1.00 -31.53 303.07 -8.67 -40.20 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -5.82 Total: 6.78 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -3.16 Total: -22.62 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.41 Total: -46.24 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.53 -8.67 -40.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834981.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.951 kcal (2) G-P(sol) polarization free energy of solvation -31.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds