Wall clock time and date at job start Mon Mar 30 2020 06:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47063 * 2 1 4 4 C 1.52995 * 109.47392 * 119.99774 * 2 1 3 5 5 C 1.50701 * 109.47264 * 182.58867 * 4 2 1 6 6 H 1.07995 * 119.99811 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99523 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99538 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00443 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47213 * 89.99904 * 9 7 5 11 11 H 1.48498 * 109.47122 * 210.00372 * 9 7 5 12 12 H 1.48502 * 109.46783 * 329.99718 * 9 7 5 13 13 N 1.46897 * 109.47263 * 240.00275 * 2 1 3 14 14 C 1.46434 * 111.00389 * 96.88637 * 13 2 1 15 15 C 1.53378 * 108.63994 * 287.82841 * 14 13 2 16 16 C 1.53030 * 107.93815 * 291.69080 * 15 14 13 17 17 C 1.50813 * 109.68805 * 47.39125 * 16 15 14 18 18 C 1.38616 * 118.05769 * 164.55317 * 17 16 15 19 19 C 1.38612 * 120.43698 * 179.71118 * 18 17 16 20 20 N 1.39998 * 120.13498 * 179.89958 * 19 18 17 21 21 C 1.38888 * 119.73136 * 359.87951 * 19 18 17 22 22 C 1.37784 * 119.86694 * 0.38863 * 21 19 18 23 23 C 1.38337 * 122.01500 * 344.31680 * 17 16 15 24 24 H 1.08994 * 109.47238 * 307.57339 * 1 2 3 25 25 H 1.09004 * 109.47094 * 67.56894 * 1 2 3 26 26 H 1.08998 * 109.47324 * 187.57257 * 1 2 3 27 27 H 1.09000 * 109.47473 * 302.59419 * 4 2 1 28 28 H 1.09002 * 109.46667 * 62.59185 * 4 2 1 29 29 H 0.96996 * 119.99919 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.60896 * 168.07621 * 14 13 2 31 31 H 1.09005 * 109.74692 * 47.65505 * 14 13 2 32 32 H 1.09000 * 109.76310 * 172.07974 * 15 14 13 33 33 H 1.08995 * 109.81561 * 51.32739 * 15 14 13 34 34 H 1.09009 * 109.43439 * 287.32532 * 16 15 14 35 35 H 1.08994 * 109.43590 * 167.46034 * 16 15 14 36 36 H 1.08003 * 119.77905 * 359.67950 * 18 17 16 37 37 H 0.96999 * 120.00286 * 179.97438 * 20 19 18 38 38 H 0.96994 * 120.00162 * 359.97438 * 20 19 18 39 39 H 1.08000 * 120.06347 * 180.11710 * 21 19 18 40 40 H 1.08007 * 119.73496 * 179.78281 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5457 -0.6658 1.2817 6 1 4.0848 -0.1659 0.4907 7 6 4.2348 -1.2535 2.3213 8 7 5.5488 -1.2048 2.3500 9 14 3.3023 -2.1188 3.6892 10 1 3.1153 -3.5484 3.3333 11 1 4.0743 -2.0204 4.9538 12 1 1.9758 -1.4755 3.8677 13 7 2.0197 -0.6924 -1.1994 14 6 2.3492 0.2629 -2.2592 15 6 1.0441 0.8336 -2.8279 16 6 0.3217 -0.2924 -3.5711 17 6 0.2966 -1.5328 -2.7136 18 6 -0.5814 -2.5477 -3.0609 19 6 -0.6410 -3.7118 -2.3107 20 7 -1.5315 -4.7320 -2.6659 21 6 0.1866 -3.8622 -1.2055 22 6 1.0556 -2.8515 -0.8565 23 6 1.1192 -1.6789 -1.6111 24 1 -0.3633 0.6266 0.8144 25 1 -0.3633 0.3921 -0.9499 26 1 -0.3634 -1.0187 0.1354 27 1 1.6393 -0.2349 2.1386 28 1 1.7151 -1.7614 1.2263 29 1 6.0336 -1.6178 3.0815 30 1 2.9020 -0.2443 -3.0499 31 1 2.9547 1.0719 -1.8505 32 1 1.2674 1.6470 -3.5182 33 1 0.4167 1.2011 -2.0159 34 1 0.8453 -0.5062 -4.5030 35 1 -0.6999 0.0163 -3.7925 36 1 -1.2235 -2.4305 -3.9213 37 1 -1.5714 -5.5459 -2.1398 38 1 -2.1087 -4.6249 -3.4380 39 1 0.1460 -4.7677 -0.6184 40 1 1.6958 -2.9692 0.0055 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695834981.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:14 Heat of formation + Delta-G solvation = 12.769836 kcal Electronic energy + Delta-G solvation = -20323.903253 eV Core-core repulsion = 17523.239507 eV Total energy + Delta-G solvation = -2800.663746 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.73908 -38.66484 -36.02212 -34.44894 -34.39488 -32.35100 -30.70542 -29.63554 -28.94290 -25.66092 -24.58978 -23.64622 -22.94377 -21.71207 -19.96299 -18.78039 -17.82997 -17.45179 -17.24297 -16.47024 -16.15725 -15.55308 -15.32025 -14.83781 -14.78308 -14.28837 -14.15175 -14.05515 -13.66934 -13.59579 -13.49201 -13.23715 -13.03787 -12.72317 -12.55650 -12.35614 -11.96386 -11.68931 -11.49591 -11.44989 -11.20255 -11.14191 -10.88701 -10.64467 -9.49681 -9.24564 -8.16498 -7.84740 -6.13936 0.59690 0.81742 1.35977 1.36828 1.48235 2.42176 2.95763 3.10462 3.16532 3.29182 3.91697 3.99197 4.08184 4.11945 4.29206 4.36303 4.43009 4.53639 4.59878 4.66933 4.75852 4.88215 4.93839 4.98725 5.04203 5.07941 5.13837 5.22195 5.29795 5.35583 5.36892 5.45264 5.53252 5.60068 5.77983 5.85237 5.99977 6.40506 6.56030 6.69286 6.90776 6.96597 7.15887 7.45931 9.01085 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020176 B = 0.007479 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.476584 B = 3743.068160 C = 4596.765747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.108 3.892 3 H 0.063 0.937 4 C -0.006 4.006 5 C -0.484 4.484 6 H 0.035 0.965 7 C -0.002 4.002 8 N -0.958 5.958 9 Si 0.938 3.062 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.249 1.249 13 N -0.503 5.503 14 C 0.058 3.942 15 C -0.157 4.157 16 C -0.071 4.071 17 C -0.084 4.084 18 C -0.187 4.187 19 C 0.196 3.804 20 N -0.872 5.872 21 C -0.195 4.195 22 C -0.098 4.098 23 C 0.064 3.936 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.016 0.984 28 H 0.019 0.981 29 H 0.260 0.740 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.141 0.859 37 H 0.403 0.597 38 H 0.406 0.594 39 H 0.125 0.875 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.741 -1.927 -12.789 21.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.002 3.998 3 H 0.081 0.919 4 C -0.044 4.044 5 C -0.522 4.522 6 H 0.054 0.946 7 C -0.196 4.196 8 N -0.601 5.601 9 Si 0.763 3.237 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.172 1.172 13 N -0.219 5.219 14 C -0.070 4.070 15 C -0.196 4.196 16 C -0.107 4.107 17 C -0.087 4.087 18 C -0.210 4.210 19 C 0.091 3.909 20 N -0.413 5.413 21 C -0.218 4.218 22 C -0.118 4.118 23 C -0.033 4.033 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.158 0.842 37 H 0.232 0.768 38 H 0.235 0.765 39 H 0.143 0.857 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -17.117 -2.132 -12.530 21.320 hybrid contribution -0.165 -0.482 0.812 0.958 sum -17.282 -2.614 -11.718 21.043 Atomic orbital electron populations 1.22573 0.95780 1.01899 1.02510 1.21527 0.92745 0.96013 0.89479 0.91889 1.19756 0.94660 0.96131 0.93858 1.21259 0.91594 1.33058 1.06308 0.94624 1.25883 0.95458 0.97477 1.00819 1.70076 1.08125 1.48039 1.33866 0.85836 0.79714 0.79427 0.78725 1.19879 1.21337 1.17245 1.58528 1.42586 1.14531 1.06216 1.22210 0.97256 0.94295 0.93192 1.22362 0.97259 0.98687 1.01254 1.20529 1.02077 0.90948 0.97186 1.19909 0.94508 0.97049 0.97244 1.20518 1.04012 0.93492 1.02979 1.17653 0.90608 0.89674 0.92971 1.42332 1.44180 1.18825 1.36012 1.20530 1.00824 1.00388 1.00097 1.21073 0.98313 0.92895 0.99525 1.18317 0.94510 0.93394 0.97102 0.91961 0.90662 0.93163 0.96534 0.96262 0.93124 0.91324 0.91550 0.88937 0.90979 0.89748 0.88764 0.84152 0.76842 0.76472 0.85727 0.88186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.59 7.82 71.98 0.56 -5.02 16 2 C 0.11 4.38 1.94 44.91 0.09 4.47 16 3 H 0.06 2.59 7.44 -2.39 -0.02 2.57 16 4 C -0.01 -0.31 3.51 29.85 0.10 -0.21 16 5 C -0.48 -28.63 9.33 25.60 0.24 -28.39 16 6 H 0.04 2.33 7.98 -2.91 -0.02 2.31 16 7 C 0.00 -0.11 5.47 84.66 0.46 0.36 16 8 N -0.96 -62.47 13.96 21.45 0.30 -62.17 16 9 Si 0.94 46.45 27.47 68.60 1.88 48.33 16 10 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 12 H -0.25 -11.45 6.54 99.48 0.65 -10.80 16 13 N -0.50 -20.00 4.04 -671.67 -2.71 -22.71 16 14 C 0.06 1.92 5.72 86.52 0.49 2.41 16 15 C -0.16 -3.81 5.70 30.73 0.18 -3.63 16 16 C -0.07 -1.55 5.72 29.89 0.17 -1.38 16 17 C -0.08 -2.38 5.13 -19.71 -0.10 -2.48 16 18 C -0.19 -4.57 9.48 22.45 0.21 -4.36 16 19 C 0.20 4.92 6.76 38.08 0.26 5.18 16 20 N -0.87 -14.55 9.11 -51.36 -0.47 -15.02 16 21 C -0.20 -6.01 9.89 22.32 0.22 -5.79 16 22 C -0.10 -3.71 8.01 22.49 0.18 -3.53 16 23 C 0.06 2.31 3.43 38.22 0.13 2.44 16 24 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 25 H 0.07 2.17 4.53 -2.38 -0.01 2.16 16 26 H 0.05 1.74 6.53 -2.39 -0.02 1.73 16 27 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 28 H 0.02 0.95 4.78 -2.39 -0.01 0.94 16 29 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 30 H 0.07 2.25 8.11 -2.39 -0.02 2.23 16 31 H 0.07 2.30 7.73 -2.38 -0.02 2.28 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 1.82 4.90 -2.39 -0.01 1.81 16 34 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.40 5.58 8.85 -92.71 -0.82 4.76 16 38 H 0.41 4.80 8.85 -92.71 -0.82 3.98 16 39 H 0.12 3.42 8.06 -2.91 -0.02 3.40 16 40 H 0.10 4.46 5.95 -2.91 -0.02 4.45 16 Total: -1.00 -71.61 303.07 1.57 -70.04 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -0.63 Total: 21.46 kcal Atomic # 6 Polarization: -43.14 SS G_CDS: 3.20 Total: -39.94 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -2.88 Total: -99.90 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.88 Total: 48.33 kcal Total: -71.61 1.57 -70.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834981.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.813 kcal (2) G-P(sol) polarization free energy of solvation -71.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds