Wall clock time and date at job start Mon Mar 30 2020 06:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46663 * 2 1 4 4 C 1.53001 * 109.47504 * 120.00040 * 2 1 3 5 5 C 1.50697 * 109.47028 * 184.14899 * 4 2 1 6 6 H 1.08002 * 120.00045 * 5.00374 * 5 4 2 7 7 C 1.37877 * 120.00014 * 184.99996 * 5 4 2 8 8 N 1.31515 * 119.99981 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00095 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47286 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47078 * 120.00206 * 9 7 5 12 12 H 1.48503 * 109.46803 * 239.99809 * 9 7 5 13 13 N 1.46899 * 109.47039 * 240.00867 * 2 1 3 14 14 C 1.47162 * 111.00459 * 68.99558 * 13 2 1 15 15 C 1.53218 * 108.22979 * 165.09432 * 14 13 2 16 16 C 1.50724 * 109.86222 * 50.86659 * 15 14 13 17 17 C 1.38747 * 118.46701 * 162.52601 * 16 15 14 18 18 C 1.38078 * 120.50740 * 179.50337 * 17 16 15 19 19 C 1.38123 * 119.91541 * 0.02562 * 18 17 16 20 20 C 1.38697 * 119.78475 * 0.09372 * 19 18 17 21 21 N 1.39668 * 119.89329 * 179.97438 * 20 19 18 22 22 C 1.37708 * 121.64756 * 342.52339 * 16 15 14 23 23 C 1.46638 * 110.99877 * 306.02034 * 13 2 1 24 24 H 1.08991 * 109.47483 * 59.99849 * 1 2 3 25 25 H 1.09001 * 109.46663 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46769 * 299.99413 * 1 2 3 27 27 H 1.08996 * 109.46890 * 304.15534 * 4 2 1 28 28 H 1.09001 * 109.46373 * 64.15435 * 4 2 1 29 29 H 0.96999 * 120.00182 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.62359 * 285.12586 * 14 13 2 31 31 H 1.08996 * 109.62655 * 45.51029 * 14 13 2 32 32 H 1.08999 * 109.99593 * 290.40469 * 15 14 13 33 33 H 1.08998 * 108.89569 * 170.64364 * 15 14 13 34 34 H 1.08004 * 119.74352 * 359.48328 * 17 16 15 35 35 H 1.08004 * 120.03829 * 180.02562 * 18 17 16 36 36 H 1.08000 * 120.10877 * 180.02562 * 19 18 17 37 37 H 0.97000 * 119.99959 * 0.02562 * 21 20 19 38 38 H 0.97004 * 120.00348 * 180.02562 * 21 20 19 39 39 H 1.09004 * 109.29896 * 55.68717 * 23 13 2 40 40 H 1.09007 * 109.13504 * 296.20860 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5436 -0.6328 1.3016 6 1 4.0759 -0.0464 0.5673 7 6 4.2395 -1.3004 2.2870 8 7 3.5913 -2.0148 3.1809 9 14 6.1031 -1.1901 2.3523 10 1 6.5874 -0.3310 1.2422 11 1 6.5190 -0.6027 3.6512 12 1 6.6844 -2.5498 2.2152 13 7 2.0196 -0.6923 -1.1995 14 6 1.7312 0.0879 -2.4135 15 6 2.5747 -0.4798 -3.5598 16 6 2.3905 -1.9736 -3.6401 17 6 2.7610 -2.6238 -4.8084 18 6 2.6200 -3.9925 -4.9239 19 6 2.1061 -4.7233 -3.8705 20 6 1.7321 -4.0775 -2.7015 21 7 1.2117 -4.8142 -1.6351 22 6 1.8684 -2.6947 -2.5895 23 6 1.4358 -2.0331 -1.3076 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.6173 -0.2522 2.1376 28 1 1.7388 -1.7681 1.2127 29 1 4.0809 -2.4841 3.8743 30 1 0.6713 0.0098 -2.6556 31 1 1.9930 1.1329 -2.2480 32 1 3.6281 -0.2536 -3.3949 33 1 2.2506 -0.0245 -4.4956 34 1 3.1624 -2.0548 -5.6341 35 1 2.9112 -4.4909 -5.8367 36 1 1.9949 -5.7941 -3.9572 37 1 1.1128 -5.7760 -1.7126 38 1 0.9492 -4.3641 -0.8169 39 1 0.3487 -1.9550 -1.2914 40 1 1.7662 -2.6359 -0.4616 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695840028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:40 Heat of formation + Delta-G solvation = 22.155510 kcal Electronic energy + Delta-G solvation = -20032.928605 eV Core-core repulsion = 17232.671853 eV Total energy + Delta-G solvation = -2800.256753 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.95300 -37.54067 -34.83827 -33.48031 -32.13098 -30.22626 -29.59627 -27.57502 -27.30214 -24.64912 -23.40436 -22.55136 -21.17932 -20.02971 -18.43217 -16.88472 -16.37412 -16.14582 -15.62964 -14.75798 -14.51544 -14.43501 -14.10268 -13.70236 -13.29882 -13.09526 -12.85713 -12.47258 -12.15103 -11.95894 -11.78588 -11.63209 -11.38224 -11.11729 -10.99149 -10.60902 -10.51684 -10.43033 -10.23730 -10.08788 -9.90992 -9.15039 -8.96632 -8.25610 -8.19974 -7.50435 -7.13752 -5.88191 -3.85138 1.74561 1.93185 3.39538 3.47044 3.53159 4.12757 4.15724 4.55716 4.59864 5.04350 5.11290 5.34128 5.49265 5.49847 5.57609 5.69592 5.71613 5.76618 5.83485 5.92894 5.98591 6.04831 6.14296 6.18605 6.23654 6.33749 6.42963 6.53336 6.65740 6.68695 6.84064 6.98331 7.02774 7.19303 7.55182 7.66381 7.77384 7.90191 8.00482 8.03580 8.13702 8.58532 9.20306 9.76578 11.23840 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017446 B = 0.006869 C = 0.006280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.543633 B = 4075.586748 C = 4457.228756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.084 3.916 3 H 0.072 0.928 4 C 0.030 3.970 5 C -0.486 4.486 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.500 5.500 14 C 0.049 3.951 15 C -0.075 4.075 16 C -0.021 4.021 17 C -0.185 4.185 18 C -0.079 4.079 19 C -0.211 4.211 20 C 0.222 3.778 21 N -0.877 5.877 22 C -0.140 4.140 23 C 0.099 3.901 24 H 0.040 0.960 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.016 0.984 28 H 0.020 0.980 29 H 0.256 0.744 30 H 0.029 0.971 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.394 0.606 38 H 0.401 0.599 39 H 0.037 0.963 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.097 -1.966 -13.609 15.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.024 4.024 3 H 0.090 0.910 4 C -0.007 4.007 5 C -0.524 4.524 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.223 5.223 14 C -0.080 4.080 15 C -0.112 4.112 16 C -0.022 4.022 17 C -0.205 4.205 18 C -0.098 4.098 19 C -0.234 4.234 20 C 0.116 3.884 21 N -0.416 5.416 22 C -0.145 4.145 23 C -0.028 4.028 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.034 0.966 28 H 0.038 0.962 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.221 0.779 38 H 0.231 0.769 39 H 0.054 0.946 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.528 -2.082 -13.428 14.669 hybrid contribution 0.104 -0.323 0.359 0.494 sum -5.424 -2.405 -13.069 14.353 Atomic orbital electron populations 1.22543 0.99826 1.01286 1.00794 1.21990 0.90016 0.98433 0.91946 0.91028 1.19196 0.96449 0.95388 0.89704 1.21185 0.91589 1.28615 1.11048 0.92166 1.24980 0.97993 0.95846 0.96021 1.69967 1.35042 1.32987 1.16630 0.86590 0.86554 0.77633 0.77555 1.19742 1.21430 1.21378 1.62422 1.57596 1.01129 1.01165 1.22201 0.96706 0.97813 0.91247 1.20598 1.01550 0.91190 0.97844 1.19344 0.95185 0.95449 0.92267 1.20766 1.07079 0.94541 0.98128 1.20665 0.97684 0.93914 0.97539 1.20374 1.09859 0.99148 0.94000 1.17679 0.92353 0.90365 0.87968 1.42573 1.72905 1.09566 1.16562 1.19206 1.06861 0.91412 0.97002 1.20795 0.95690 0.91524 0.94837 0.94079 0.92857 0.92444 0.96619 0.96162 0.93449 0.95285 0.90893 0.89716 0.91263 0.86967 0.86794 0.86832 0.77852 0.76922 0.94586 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.15 8.44 37.16 0.31 -2.83 16 2 C 0.08 1.70 2.27 -67.71 -0.15 1.54 16 3 H 0.07 1.46 7.91 -51.93 -0.41 1.05 16 4 C 0.03 0.74 4.35 -27.88 -0.12 0.62 16 5 C -0.49 -13.62 8.81 -34.44 -0.30 -13.93 16 6 H 0.06 1.71 7.75 -52.49 -0.41 1.30 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.91 -27.17 13.29 55.43 0.74 -26.43 16 9 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 10 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 N -0.50 -9.68 4.33 -228.00 -0.99 -10.67 16 14 C 0.05 0.78 5.01 -3.57 -0.02 0.76 16 15 C -0.07 -1.10 5.95 -27.76 -0.17 -1.27 16 16 C -0.02 -0.35 5.77 -104.62 -0.60 -0.95 16 17 C -0.19 -2.65 9.65 -39.45 -0.38 -3.03 16 18 C -0.08 -1.07 10.04 -39.68 -0.40 -1.47 16 19 C -0.21 -2.97 9.89 -39.45 -0.39 -3.36 16 20 C 0.22 3.49 6.73 -83.69 -0.56 2.92 16 21 N -0.88 -11.85 8.97 32.46 0.29 -11.56 16 22 C -0.14 -2.43 5.81 -104.43 -0.61 -3.04 16 23 C 0.10 1.83 3.70 -5.16 -0.02 1.81 16 24 H 0.04 0.62 7.00 -51.93 -0.36 0.26 16 25 H 0.05 0.90 6.23 -51.93 -0.32 0.57 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.02 0.53 6.44 -51.93 -0.33 0.20 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.03 0.44 7.22 -51.93 -0.38 0.07 16 31 H 0.07 1.10 7.87 -51.93 -0.41 0.69 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 35 H 0.11 1.22 8.06 -52.48 -0.42 0.80 16 36 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.39 4.23 8.84 -40.82 -0.36 3.87 16 38 H 0.40 5.61 6.93 -40.82 -0.28 5.33 16 39 H 0.04 0.63 5.94 -51.93 -0.31 0.32 16 40 H 0.09 1.91 5.45 -51.93 -0.28 1.63 16 LS Contribution 311.94 15.07 4.70 4.70 Total: -1.00 -30.99 311.94 -9.74 -40.73 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.95 Total: 6.75 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -3.51 Total: -20.86 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.04 Total: -48.66 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.99 -9.74 -40.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695840028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.886 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds