Wall clock time and date at job start Mon Mar 30 2020 06:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47297 * 2 1 4 4 C 1.52999 * 109.46887 * 239.99924 * 2 1 3 5 5 C 1.50701 * 109.47046 * 63.75002 * 4 2 1 6 6 H 1.08002 * 120.00024 * 5.19341 * 5 4 2 7 7 C 1.37880 * 120.00399 * 185.19540 * 5 4 2 8 8 N 1.31514 * 119.99830 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00281 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47145 * 59.99826 * 9 7 5 11 11 H 1.48498 * 109.47262 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47142 * 299.99906 * 9 7 5 13 13 N 1.46906 * 109.47125 * 120.00572 * 2 1 3 14 14 C 1.47164 * 110.99722 * 294.59657 * 13 2 1 15 15 C 1.52899 * 108.47875 * 165.32717 * 14 13 2 16 16 C 1.50701 * 109.87137 * 50.42681 * 15 14 13 17 17 C 1.39347 * 118.48873 * 163.16410 * 16 15 14 18 18 N 1.39680 * 119.90152 * 359.83069 * 17 16 15 19 19 C 1.38714 * 120.19694 * 179.80908 * 17 16 15 20 20 C 1.38138 * 119.73699 * 0.02562 * 19 17 16 21 21 C 1.37657 * 119.91959 * 359.92097 * 20 19 17 22 22 C 1.37561 * 121.80402 * 343.02751 * 16 15 14 23 23 C 1.46625 * 110.99621 * 171.60755 * 13 2 1 24 24 H 1.09000 * 109.47297 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46681 * 299.99742 * 1 2 3 26 26 H 1.08997 * 109.46734 * 59.99844 * 1 2 3 27 27 H 1.09000 * 109.47289 * 183.74508 * 4 2 1 28 28 H 1.08999 * 109.47382 * 303.75334 * 4 2 1 29 29 H 0.97001 * 120.00273 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.63740 * 45.62806 * 14 13 2 31 31 H 1.08997 * 109.63754 * 285.02791 * 14 13 2 32 32 H 1.09002 * 109.38911 * 170.52273 * 15 14 13 33 33 H 1.08999 * 109.39253 * 290.32463 * 15 14 13 34 34 H 0.97001 * 119.99756 * 0.02562 * 18 17 16 35 35 H 0.97001 * 119.99877 * 180.02562 * 18 17 16 36 36 H 1.07994 * 120.13146 * 180.02562 * 19 17 16 37 37 H 1.07993 * 120.02079 * 180.08233 * 20 19 17 38 38 H 1.07999 * 119.63086 * 180.02562 * 21 20 19 39 39 H 1.08993 * 109.26994 * 296.15473 * 23 13 2 40 40 H 1.09001 * 109.27025 * 55.62987 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6149 0.0408 -2.4779 6 1 1.1120 0.9912 -2.3768 7 6 1.8680 -0.4753 -3.7312 8 7 2.4808 -1.6324 -3.8544 9 14 1.3404 0.4689 -5.2542 10 1 2.0087 1.7950 -5.2706 11 1 1.7262 -0.2943 -6.4682 12 1 -0.1324 0.6571 -5.2345 13 7 2.0197 -0.6926 1.1994 14 6 1.6564 0.0452 2.4198 15 6 1.8556 -0.8783 3.6219 16 6 3.2278 -1.4992 3.5690 17 6 3.7398 -2.0796 4.7278 18 7 2.9842 -2.0726 5.9025 19 6 4.9975 -2.6647 4.7179 20 6 5.7419 -2.6696 3.5543 21 6 5.2327 -2.0963 2.4111 22 6 3.9757 -1.5076 2.4145 23 6 3.4717 -0.8876 1.1375 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.1279 -0.7798 -1.2164 28 1 1.6228 -1.7277 -1.2835 29 1 2.6585 -1.9957 -4.7361 30 1 0.6124 0.3539 2.3640 31 1 2.2956 0.9222 2.5216 32 1 1.7544 -0.3021 4.5416 33 1 1.1014 -1.6650 3.6029 34 1 2.1043 -1.6645 5.9108 35 1 3.3395 -2.4759 6.7100 36 1 5.3931 -3.1145 5.6165 37 1 6.7210 -3.1250 3.5411 38 1 5.8185 -2.1031 1.5038 39 1 3.7112 -1.5432 0.3004 40 1 3.9581 0.0765 0.9893 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695843525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:56 Heat of formation + Delta-G solvation = 19.537215 kcal Electronic energy + Delta-G solvation = -19523.600728 eV Core-core repulsion = 16723.230437 eV Total energy + Delta-G solvation = -2800.370290 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.02388 -37.56114 -34.67131 -33.94296 -32.19956 -30.59656 -29.70234 -27.86906 -26.94252 -24.28864 -23.86285 -22.42769 -21.24721 -19.77542 -18.85847 -17.11707 -16.58493 -16.34133 -15.39820 -15.02906 -14.55441 -14.54193 -14.01846 -13.77318 -13.53246 -13.22081 -12.77583 -12.68229 -12.16908 -11.82204 -11.78475 -11.48219 -11.34315 -11.15447 -10.90198 -10.80476 -10.73447 -10.37439 -10.30686 -10.09010 -9.82715 -9.16719 -9.05406 -8.35465 -8.28614 -7.68736 -7.33109 -5.97259 -3.98985 1.64251 1.82767 3.34568 3.39367 3.41279 3.89993 4.05749 4.39327 4.55938 4.95989 4.96853 5.26367 5.36812 5.38336 5.53993 5.59436 5.70475 5.76537 5.92431 5.96454 6.02866 6.07159 6.11339 6.23281 6.29916 6.37502 6.44918 6.55380 6.70316 6.78901 6.89409 7.02127 7.04768 7.15380 7.56855 7.59642 7.65213 7.76442 7.80630 7.88946 8.09899 8.46035 9.06845 9.63966 11.14032 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.032694 B = 0.004698 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.226475 B = 5957.948392 C = 6643.369015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.083 3.917 3 H 0.027 0.973 4 C 0.028 3.972 5 C -0.517 4.517 6 H 0.054 0.946 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.527 5.527 14 C 0.048 3.952 15 C -0.064 4.064 16 C -0.143 4.143 17 C 0.211 3.789 18 N -0.882 5.882 19 C -0.210 4.210 20 C -0.077 4.077 21 C -0.173 4.173 22 C -0.020 4.020 23 C 0.089 3.911 24 H 0.054 0.946 25 H 0.031 0.969 26 H 0.066 0.934 27 H 0.015 0.985 28 H 0.029 0.971 29 H 0.261 0.739 30 H 0.079 0.921 31 H 0.029 0.971 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.396 0.604 35 H 0.394 0.606 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.986 0.048 17.975 18.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.023 4.023 3 H 0.045 0.955 4 C -0.009 4.009 5 C -0.556 4.556 6 H 0.072 0.928 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.252 5.252 14 C -0.080 4.080 15 C -0.102 4.102 16 C -0.148 4.148 17 C 0.107 3.893 18 N -0.422 5.422 19 C -0.233 4.233 20 C -0.095 4.095 21 C -0.194 4.194 22 C -0.021 4.021 23 C -0.039 4.039 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.085 0.915 27 H 0.034 0.966 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.225 0.775 35 H 0.221 0.779 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.120 0.880 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.832 -0.538 17.800 17.902 hybrid contribution 0.034 1.175 -0.582 1.312 sum 1.866 0.637 17.218 17.331 Atomic orbital electron populations 1.21727 0.95160 1.01648 0.99937 1.21871 0.95226 0.95216 0.90028 0.95515 1.19230 0.96028 0.96378 0.89257 1.21142 1.38114 1.05517 0.90853 0.92760 1.24976 0.95307 0.94956 0.98983 1.69956 1.41738 1.18057 1.23470 0.86694 0.79054 0.79913 0.82542 1.20355 1.21328 1.20262 1.62399 1.11595 1.48909 1.02264 1.22141 1.00932 0.94344 0.90577 1.20305 0.93895 0.98523 0.97454 1.18990 0.97707 1.05943 0.92130 1.17689 0.90914 0.94240 0.86445 1.42481 1.21194 1.68254 1.10257 1.20400 0.95038 1.08642 0.99234 1.20617 0.98808 0.97774 0.92348 1.20757 0.96416 1.03384 0.98804 1.19545 0.93238 0.95358 0.93949 1.21066 0.88348 0.99512 0.94936 0.92643 0.95031 0.91497 0.96641 0.95241 0.92972 0.90289 0.95226 0.91994 0.90670 0.77525 0.77889 0.86868 0.86492 0.86325 0.87951 0.93794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.94 37.16 0.33 -2.12 16 2 C 0.08 1.76 2.10 -67.71 -0.14 1.61 16 3 H 0.03 0.58 8.13 -51.93 -0.42 0.16 16 4 C 0.03 0.73 4.07 -27.88 -0.11 0.61 16 5 C -0.52 -14.36 8.29 -34.44 -0.29 -14.64 16 6 H 0.05 1.46 7.17 -52.49 -0.38 1.08 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.53 -9.88 4.54 -228.19 -1.04 -10.92 16 14 C 0.05 0.75 5.44 -3.73 -0.02 0.73 16 15 C -0.06 -0.87 5.13 -27.93 -0.14 -1.01 16 16 C -0.14 -2.15 5.78 -104.46 -0.60 -2.75 16 17 C 0.21 2.75 6.73 -83.69 -0.56 2.18 16 18 N -0.88 -8.33 8.97 32.46 0.29 -8.03 16 19 C -0.21 -2.64 9.89 -39.44 -0.39 -3.03 16 20 C -0.08 -1.01 10.02 -39.83 -0.40 -1.41 16 21 C -0.17 -2.61 9.62 -39.59 -0.38 -2.99 16 22 C -0.02 -0.33 5.79 -104.69 -0.61 -0.93 16 23 C 0.09 1.64 4.48 -5.16 -0.02 1.62 16 24 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 25 H 0.03 0.51 6.28 -51.93 -0.33 0.18 16 26 H 0.07 1.35 6.97 -51.93 -0.36 0.99 16 27 H 0.02 0.41 6.17 -51.93 -0.32 0.09 16 28 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.08 1.15 5.95 -51.93 -0.31 0.84 16 31 H 0.03 0.46 8.05 -51.93 -0.42 0.04 16 32 H 0.06 0.68 7.13 -51.93 -0.37 0.31 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.40 3.28 6.97 -40.82 -0.28 3.00 16 35 H 0.39 2.82 8.84 -40.82 -0.36 2.46 16 36 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.10 2.09 6.33 -51.93 -0.33 1.76 16 40 H 0.04 0.82 8.13 -51.93 -0.42 0.39 16 LS Contribution 312.43 15.07 4.71 4.71 Total: -1.00 -30.56 312.43 -9.73 -40.29 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.97 Total: 3.92 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -3.44 Total: -20.55 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -0.01 Total: -44.89 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.56 -9.73 -40.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695843525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.822 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds