Wall clock time and date at job start Mon Mar 30 2020 06:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47297 * 2 1 4 4 C 1.52999 * 109.46887 * 239.99924 * 2 1 3 5 5 C 1.50701 * 109.47046 * 63.75002 * 4 2 1 6 6 H 1.08002 * 120.00024 * 5.19341 * 5 4 2 7 7 C 1.37880 * 120.00399 * 185.19540 * 5 4 2 8 8 N 1.31514 * 119.99830 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00281 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47145 * 59.99826 * 9 7 5 11 11 H 1.48498 * 109.47262 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47142 * 299.99906 * 9 7 5 13 13 N 1.46906 * 109.47125 * 120.00572 * 2 1 3 14 14 C 1.47164 * 110.99722 * 294.59657 * 13 2 1 15 15 C 1.52899 * 108.47875 * 165.32717 * 14 13 2 16 16 C 1.50701 * 109.87137 * 50.42681 * 15 14 13 17 17 C 1.39347 * 118.48873 * 163.16410 * 16 15 14 18 18 N 1.39680 * 119.90152 * 359.83069 * 17 16 15 19 19 C 1.38714 * 120.19694 * 179.80908 * 17 16 15 20 20 C 1.38138 * 119.73699 * 0.02562 * 19 17 16 21 21 C 1.37657 * 119.91959 * 359.92097 * 20 19 17 22 22 C 1.37561 * 121.80402 * 343.02751 * 16 15 14 23 23 C 1.46625 * 110.99621 * 171.60755 * 13 2 1 24 24 H 1.09000 * 109.47297 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46681 * 299.99742 * 1 2 3 26 26 H 1.08997 * 109.46734 * 59.99844 * 1 2 3 27 27 H 1.09000 * 109.47289 * 183.74508 * 4 2 1 28 28 H 1.08999 * 109.47382 * 303.75334 * 4 2 1 29 29 H 0.97001 * 120.00273 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.63740 * 45.62806 * 14 13 2 31 31 H 1.08997 * 109.63754 * 285.02791 * 14 13 2 32 32 H 1.09002 * 109.38911 * 170.52273 * 15 14 13 33 33 H 1.08999 * 109.39253 * 290.32463 * 15 14 13 34 34 H 0.97001 * 119.99756 * 0.02562 * 18 17 16 35 35 H 0.97001 * 119.99877 * 180.02562 * 18 17 16 36 36 H 1.07994 * 120.13146 * 180.02562 * 19 17 16 37 37 H 1.07993 * 120.02079 * 180.08233 * 20 19 17 38 38 H 1.07999 * 119.63086 * 180.02562 * 21 20 19 39 39 H 1.08993 * 109.26994 * 296.15473 * 23 13 2 40 40 H 1.09001 * 109.27025 * 55.62987 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6149 0.0408 -2.4779 6 1 1.1120 0.9912 -2.3768 7 6 1.8680 -0.4753 -3.7312 8 7 2.4808 -1.6324 -3.8544 9 14 1.3404 0.4689 -5.2542 10 1 2.0087 1.7950 -5.2706 11 1 1.7262 -0.2943 -6.4682 12 1 -0.1324 0.6571 -5.2345 13 7 2.0197 -0.6926 1.1994 14 6 1.6564 0.0452 2.4198 15 6 1.8556 -0.8783 3.6219 16 6 3.2278 -1.4992 3.5690 17 6 3.7398 -2.0796 4.7278 18 7 2.9842 -2.0726 5.9025 19 6 4.9975 -2.6647 4.7179 20 6 5.7419 -2.6696 3.5543 21 6 5.2327 -2.0963 2.4111 22 6 3.9757 -1.5076 2.4145 23 6 3.4717 -0.8876 1.1375 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.1279 -0.7798 -1.2164 28 1 1.6228 -1.7277 -1.2835 29 1 2.6585 -1.9957 -4.7361 30 1 0.6124 0.3539 2.3640 31 1 2.2956 0.9222 2.5216 32 1 1.7544 -0.3021 4.5416 33 1 1.1014 -1.6650 3.6029 34 1 2.1043 -1.6645 5.9108 35 1 3.3395 -2.4759 6.7100 36 1 5.3931 -3.1145 5.6165 37 1 6.7210 -3.1250 3.5411 38 1 5.8185 -2.1031 1.5038 39 1 3.7112 -1.5432 0.3004 40 1 3.9581 0.0765 0.9893 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695843525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:54 Heat of formation + Delta-G solvation = -0.134652 kcal Electronic energy + Delta-G solvation = -19524.453764 eV Core-core repulsion = 16723.230437 eV Total energy + Delta-G solvation = -2801.223326 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.19425 -38.95202 -35.73491 -35.58046 -34.01710 -31.79360 -31.20298 -29.04746 -28.67530 -25.83330 -25.41222 -23.90144 -22.35081 -21.22460 -20.32297 -18.69156 -17.95249 -17.51699 -16.63509 -16.52266 -16.25350 -15.87396 -15.42881 -15.27452 -14.73294 -14.42689 -14.15394 -14.08711 -13.85281 -13.38390 -13.13301 -13.04642 -12.82158 -12.68972 -12.59031 -12.41622 -12.17975 -11.94352 -11.81695 -11.38764 -11.31921 -11.12916 -10.95577 -10.50855 -9.48074 -9.17027 -8.29204 -8.16689 -6.26768 0.54244 0.75116 1.40828 1.43742 1.51410 2.41792 2.94570 3.01434 3.12238 3.16740 3.80149 3.87050 4.16304 4.22382 4.28944 4.34314 4.44395 4.50410 4.57698 4.66224 4.69518 4.76570 4.83300 4.86226 5.02472 5.08092 5.12677 5.22420 5.27931 5.43750 5.47967 5.49411 5.65338 5.73017 5.79020 5.86693 6.02653 6.15135 6.30797 6.40312 6.67217 6.88746 7.08696 7.41273 8.95309 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.032694 B = 0.004698 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.226475 B = 5957.948392 C = 6643.369015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.092 3.908 3 H 0.022 0.978 4 C 0.038 3.962 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.962 3.038 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.265 1.265 13 N -0.535 5.535 14 C 0.047 3.953 15 C -0.058 4.058 16 C -0.161 4.161 17 C 0.214 3.786 18 N -0.865 5.865 19 C -0.210 4.210 20 C -0.075 4.075 21 C -0.197 4.197 22 C -0.045 4.045 23 C 0.097 3.903 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.055 0.945 27 H -0.010 1.010 28 H -0.007 1.007 29 H 0.262 0.738 30 H 0.094 0.906 31 H 0.029 0.971 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.404 0.596 35 H 0.408 0.592 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.111 0.889 39 H 0.066 0.934 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.165 0.764 20.350 20.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.015 4.015 3 H 0.040 0.960 4 C 0.001 3.999 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.196 4.196 8 N -0.573 5.573 9 Si 0.787 3.213 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.190 1.190 13 N -0.260 5.260 14 C -0.081 4.081 15 C -0.095 4.095 16 C -0.166 4.166 17 C 0.108 3.892 18 N -0.407 5.407 19 C -0.232 4.232 20 C -0.094 4.094 21 C -0.218 4.218 22 C -0.046 4.046 23 C -0.031 4.031 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.009 0.991 28 H 0.011 0.989 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.047 0.953 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.234 0.766 35 H 0.238 0.762 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.129 0.871 39 H 0.084 0.916 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.991 0.186 20.227 20.252 hybrid contribution 0.343 0.899 -1.219 1.553 sum 1.334 1.085 19.008 19.085 Atomic orbital electron populations 1.21628 0.93394 1.01394 1.01190 1.21613 0.96515 0.94143 0.89269 0.96049 1.19035 0.94317 0.94874 0.91670 1.21542 1.37902 1.05894 0.91795 0.91990 1.25924 0.95216 0.95860 1.02583 1.70112 1.43034 1.19878 1.24295 0.85546 0.79148 0.78563 0.78063 1.19330 1.21054 1.18992 1.62355 1.11602 1.49308 1.02698 1.22282 1.01587 0.94566 0.89627 1.20312 0.93106 0.98400 0.97663 1.19170 0.98327 1.06794 0.92309 1.17750 0.91326 0.93314 0.86819 1.42427 1.21144 1.67509 1.09576 1.20784 0.94693 1.07795 0.99976 1.20913 0.99884 0.96834 0.91733 1.20852 0.96402 1.04755 0.99751 1.19455 0.94444 0.97171 0.93579 1.20832 0.88414 0.98350 0.95456 0.93593 0.91316 0.92635 0.99146 0.98881 0.92916 0.88797 0.95309 0.88718 0.90502 0.76596 0.76210 0.83815 0.83998 0.87083 0.91598 0.95032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.53 8.94 71.98 0.64 -3.89 16 2 C 0.09 4.00 2.10 44.92 0.09 4.09 16 3 H 0.02 0.95 8.13 -2.39 -0.02 0.93 16 4 C 0.04 2.09 4.07 29.85 0.12 2.21 16 5 C -0.53 -30.47 8.29 25.60 0.21 -30.26 16 6 H 0.06 3.37 7.17 -2.91 -0.02 3.35 16 7 C 0.00 0.11 5.46 84.66 0.46 0.57 16 8 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 9 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 13 N -0.54 -20.61 4.54 -875.87 -3.98 -24.59 16 14 C 0.05 1.39 5.44 86.22 0.47 1.86 16 15 C -0.06 -1.42 5.13 29.81 0.15 -1.27 16 16 C -0.16 -4.63 5.78 -19.76 -0.11 -4.75 16 17 C 0.21 4.98 6.73 38.27 0.26 5.24 16 18 N -0.87 -13.00 8.97 -51.22 -0.46 -13.46 16 19 C -0.21 -4.66 9.89 22.36 0.22 -4.44 16 20 C -0.08 -1.87 10.02 22.11 0.22 -1.65 16 21 C -0.20 -6.13 9.62 22.27 0.21 -5.92 16 22 C -0.05 -1.55 5.79 -19.91 -0.12 -1.66 16 23 C 0.10 3.86 4.48 85.59 0.38 4.24 16 24 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.07 2.09 6.28 -2.39 -0.01 2.08 16 26 H 0.05 2.23 6.97 -2.39 -0.02 2.21 16 27 H -0.01 -0.57 6.17 -2.39 -0.01 -0.58 16 28 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 29 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 30 H 0.09 2.48 5.95 -2.39 -0.01 2.46 16 31 H 0.03 0.86 8.05 -2.39 -0.02 0.85 16 32 H 0.09 1.71 7.13 -2.39 -0.02 1.69 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.40 5.04 6.97 -92.71 -0.65 4.40 16 35 H 0.41 4.10 8.84 -92.71 -0.82 3.28 16 36 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 37 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 38 H 0.11 3.44 8.06 -2.91 -0.02 3.42 16 39 H 0.07 3.01 6.33 -2.39 -0.02 2.99 16 40 H 0.03 1.28 8.13 -2.39 -0.02 1.26 16 Total: -1.00 -68.75 312.43 0.68 -68.06 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -0.42 Total: 16.43 kcal Atomic # 6 Polarization: -38.83 SS G_CDS: 3.22 Total: -35.60 kcal Atomic # 7 Polarization: -91.45 SS G_CDS: -4.15 Total: -95.61 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -68.75 0.68 -68.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695843525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.930 kcal (2) G-P(sol) polarization free energy of solvation -68.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds