Wall clock time and date at job start Mon Mar 30 2020 06:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47017 * 2 1 4 4 C 1.50701 * 109.47312 * 120.00240 * 2 1 3 5 5 H 1.07993 * 119.99942 * 114.56408 * 4 2 1 6 6 C 1.37873 * 119.99672 * 294.55530 * 4 2 1 7 7 N 1.31509 * 120.00544 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99906 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46807 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.47364 * 120.00105 * 8 6 4 11 11 H 1.48498 * 109.47525 * 240.00820 * 8 6 4 12 12 N 1.46905 * 109.47117 * 240.00465 * 2 1 3 13 13 C 1.46805 * 111.00431 * 83.65458 * 12 2 1 14 14 C 1.51753 * 111.15321 * 35.62288 * 13 12 2 15 15 H 1.08997 * 108.56514 * 306.34407 * 14 13 12 16 16 N 1.46897 * 108.50131 * 188.55736 * 14 13 12 17 17 C 1.51769 * 113.90625 * 67.47751 * 14 13 12 18 18 C 1.53175 * 110.63265 * 293.20236 * 17 14 13 19 19 C 1.51466 * 108.23944 * 83.19332 * 18 17 14 20 20 C 1.38162 * 119.74895 * 110.58243 * 19 18 17 21 21 C 1.38373 * 119.65533 * 179.88467 * 20 19 18 22 22 C 1.38305 * 120.15192 * 0.02562 * 21 20 19 23 23 C 1.38139 * 120.19441 * 0.02562 * 22 21 20 24 24 C 1.37783 * 119.82385 * 290.50520 * 19 18 17 25 25 H 1.09001 * 109.47017 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47093 * 299.99898 * 1 2 3 27 27 H 1.09000 * 109.47547 * 59.99606 * 1 2 3 28 28 H 0.97002 * 120.00369 * 179.97438 * 7 6 4 29 29 H 1.08993 * 109.14720 * 156.02621 * 13 12 2 30 30 H 1.09005 * 109.14542 * 275.17387 * 13 12 2 31 31 H 1.00903 * 111.00030 * 175.70023 * 16 14 13 32 32 H 1.00908 * 110.99814 * 299.65229 * 16 14 13 33 33 H 1.08992 * 109.24295 * 172.90670 * 17 14 13 34 34 H 1.08995 * 109.21545 * 53.47275 * 17 14 13 35 35 H 1.09008 * 109.70878 * 323.50287 * 18 17 14 36 36 H 1.08998 * 109.70516 * 202.88242 * 18 17 14 37 37 H 1.07999 * 120.16947 * 359.91224 * 20 19 18 38 38 H 1.08005 * 119.92514 * 180.02562 * 21 20 19 39 39 H 1.08004 * 119.90553 * 180.02562 * 22 21 20 40 40 H 1.07997 * 120.20272 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5789 -1.6368 1.1337 6 6 1.7943 -0.1776 2.4795 7 7 1.1284 0.9503 2.5974 8 14 2.4164 -1.0586 4.0048 9 1 3.1301 -2.2977 3.6042 10 1 3.3470 -0.1693 4.7451 11 1 1.2671 -1.4090 4.8775 12 7 2.0196 -0.6924 -1.1995 13 6 2.0522 0.2140 -2.3539 14 6 2.4358 1.6211 -1.9346 15 1 1.7660 1.9400 -1.1361 16 7 2.2518 2.5166 -3.0844 17 6 3.8670 1.7486 -1.4460 18 6 4.0592 0.9840 -0.1327 19 6 4.3101 -0.4724 -0.4645 20 6 5.5604 -1.0192 -0.2483 21 6 5.7869 -2.3506 -0.5498 22 6 4.7668 -3.1293 -1.0654 23 6 3.5170 -2.5824 -1.2825 24 6 3.2905 -1.2438 -0.9781 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.9607 1.3250 3.4762 29 1 2.7801 -0.1540 -3.0769 30 1 1.0668 0.2356 -2.8194 31 1 2.4296 3.4761 -2.8276 32 1 2.8347 2.2355 -3.8587 33 1 4.0996 2.8014 -1.2860 34 1 4.5411 1.3423 -2.2000 35 1 3.1612 1.0723 0.4789 36 1 4.9140 1.3906 0.4076 37 1 6.3567 -0.4107 0.1543 38 1 6.7625 -2.7826 -0.3822 39 1 4.9479 -4.1682 -1.2989 40 1 2.7203 -3.1905 -1.6847 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696373318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:51 Heat of formation + Delta-G solvation = 59.451908 kcal Electronic energy + Delta-G solvation = -21114.447798 eV Core-core repulsion = 18315.808338 eV Total energy + Delta-G solvation = -2798.639459 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.45530 -37.09755 -34.72854 -32.86801 -32.34545 -29.94605 -28.96076 -28.62024 -25.46396 -24.65068 -23.61248 -21.78201 -21.39461 -19.86083 -18.59661 -17.15182 -15.94377 -15.71656 -15.03199 -14.99662 -14.38749 -14.04074 -13.76797 -13.37768 -13.18682 -12.82431 -12.52214 -12.21665 -12.13227 -11.70832 -11.39117 -11.09154 -11.05948 -10.95037 -10.81288 -10.65100 -10.55874 -10.22784 -10.05738 -9.79994 -9.57241 -8.81291 -8.54759 -8.37084 -8.08316 -7.65910 -7.25799 -6.08945 -4.09969 2.09472 2.11061 3.26709 3.35527 3.42265 4.38635 4.45965 4.71171 5.09011 5.14696 5.25819 5.35290 5.52511 5.56305 5.65515 5.74252 5.90777 6.00926 6.12025 6.16840 6.27294 6.36931 6.49512 6.52798 6.62337 6.71564 6.76279 6.98425 7.04692 7.13171 7.15854 7.25067 7.34191 7.45455 7.47388 7.55674 7.67788 7.80126 7.84512 8.14767 8.26661 8.56195 8.97325 9.54223 10.98628 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015378 B = 0.011491 C = 0.008397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.333983 B = 2435.999773 C = 3333.783727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.183 3.817 3 H 0.049 0.951 4 C -0.506 4.506 5 H 0.065 0.935 6 C 0.065 3.935 7 N -0.891 5.891 8 Si 0.887 3.113 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.497 5.497 13 C 0.074 3.926 14 C 0.046 3.954 15 H 0.101 0.899 16 N -0.843 5.843 17 C -0.139 4.139 18 C -0.116 4.116 19 C -0.074 4.074 20 C -0.123 4.123 21 C -0.141 4.141 22 C -0.132 4.132 23 C -0.112 4.112 24 C 0.141 3.859 25 H 0.033 0.967 26 H 0.075 0.925 27 H 0.012 0.988 28 H 0.261 0.739 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.336 0.664 32 H 0.331 0.669 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.144 0.856 36 H 0.054 0.946 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.135 -0.015 -7.811 9.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.079 3.921 3 H 0.066 0.934 4 C -0.545 4.545 5 H 0.083 0.917 6 C -0.137 4.137 7 N -0.530 5.530 8 Si 0.715 3.285 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.218 5.218 13 C -0.054 4.054 14 C -0.066 4.066 15 H 0.119 0.881 16 N -0.370 5.370 17 C -0.178 4.178 18 C -0.153 4.153 19 C -0.076 4.076 20 C -0.142 4.142 21 C -0.159 4.159 22 C -0.151 4.151 23 C -0.131 4.131 24 C 0.047 3.953 25 H 0.052 0.948 26 H 0.094 0.906 27 H 0.031 0.969 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.162 0.838 36 H 0.073 0.927 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.919 -0.519 -7.785 9.223 hybrid contribution 2.007 0.341 1.399 2.470 sum 6.926 -0.178 -6.387 9.423 Atomic orbital electron populations 1.21695 0.97533 0.99581 0.99472 1.20037 0.92557 0.94482 0.84982 0.93425 1.21309 1.34527 1.08592 0.90056 0.91656 1.24830 0.95121 0.94964 0.98767 1.69910 1.40416 1.19012 1.23689 0.86586 0.78631 0.80065 0.83226 1.19638 1.21118 1.21022 1.60703 1.19935 1.33922 1.07285 1.21743 1.01394 0.88802 0.93439 1.21886 0.95641 0.95364 0.93710 0.88133 1.59029 1.62934 1.05952 1.09129 1.22125 0.97845 0.99590 0.98252 1.21587 1.06066 0.90422 0.97254 1.20223 0.93147 0.96377 0.97819 1.20884 0.96459 0.95228 1.01651 1.20901 0.98607 0.94368 1.02055 1.20860 0.93535 0.99009 1.01668 1.21033 0.96403 0.94258 1.01373 1.18445 0.88697 0.92831 0.95284 0.94759 0.90634 0.96941 0.92931 0.92976 0.90283 0.85228 0.85795 0.92576 0.93138 0.83827 0.92701 0.87284 0.87379 0.87123 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.95 9.23 37.16 0.34 -2.61 16 2 C 0.18 4.30 0.91 -68.86 -0.06 4.24 16 3 H 0.05 1.17 2.56 -51.93 -0.13 1.03 16 4 C -0.51 -13.15 5.81 -34.44 -0.20 -13.35 16 5 H 0.07 1.80 6.29 -52.49 -0.33 1.47 16 6 C 0.06 1.72 5.24 -17.82 -0.09 1.62 16 7 N -0.89 -24.08 11.73 55.43 0.65 -23.43 16 8 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 N -0.50 -10.47 4.62 -165.78 -0.77 -11.23 16 13 C 0.07 1.35 5.16 -4.51 -0.02 1.32 16 14 C 0.05 0.79 2.63 -68.97 -0.18 0.61 16 15 H 0.10 2.03 5.66 -51.93 -0.29 1.74 16 16 N -0.84 -11.85 9.15 -5.75 -0.05 -11.90 16 17 C -0.14 -2.31 5.17 -27.27 -0.14 -2.45 16 18 C -0.12 -2.29 5.29 -27.42 -0.14 -2.43 16 19 C -0.07 -1.47 3.98 -104.44 -0.42 -1.89 16 20 C -0.12 -2.25 9.69 -39.56 -0.38 -2.63 16 21 C -0.14 -2.37 10.05 -39.51 -0.40 -2.76 16 22 C -0.13 -2.24 10.03 -39.59 -0.40 -2.63 16 23 C -0.11 -2.12 9.93 -39.28 -0.39 -2.51 16 24 C 0.14 2.91 2.60 -83.82 -0.22 2.69 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.94 6.51 -51.93 -0.34 1.60 16 27 H 0.01 0.26 8.02 -51.93 -0.42 -0.16 16 28 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.05 0.90 7.76 -51.93 -0.40 0.50 16 30 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.34 4.21 9.00 -39.29 -0.35 3.85 16 32 H 0.33 4.09 9.00 -39.29 -0.35 3.74 16 33 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 34 H 0.05 0.81 7.88 -51.93 -0.41 0.40 16 35 H 0.14 3.35 3.38 -51.92 -0.18 3.17 16 36 H 0.05 1.02 7.92 -51.93 -0.41 0.60 16 37 H 0.11 1.77 7.98 -52.49 -0.42 1.35 16 38 H 0.11 1.51 8.06 -52.48 -0.42 1.08 16 39 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 40 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 300.90 15.07 4.53 4.53 Total: -1.00 -26.98 300.90 -9.07 -36.04 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -5.71 Total: 12.57 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -2.71 Total: -22.78 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.17 Total: -46.56 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -26.98 -9.07 -36.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696373318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.493 kcal (2) G-P(sol) polarization free energy of solvation -26.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds