Wall clock time and date at job start Mon Mar 30 2020 06:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46774 * 2 1 4 4 C 1.50702 * 109.47055 * 240.00860 * 2 1 3 5 5 H 1.08005 * 119.99636 * 239.99508 * 4 2 1 6 6 C 1.37877 * 120.00348 * 59.99568 * 4 2 1 7 7 N 1.31517 * 119.99691 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00050 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47072 * 60.00100 * 8 6 4 10 10 H 1.48501 * 109.46955 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47161 * 299.99931 * 8 6 4 12 12 N 1.46895 * 109.47221 * 120.00465 * 2 1 3 13 13 C 1.47176 * 110.98275 * 316.54164 * 12 2 1 14 14 C 1.53137 * 107.86127 * 139.49020 * 13 12 2 15 15 H 1.08994 * 109.53194 * 152.74496 * 14 13 12 16 16 N 1.46904 * 109.52251 * 272.87636 * 14 13 12 17 17 C 1.52950 * 109.19344 * 32.80479 * 14 13 12 18 18 C 1.52825 * 108.31780 * 59.70442 * 17 14 13 19 19 C 1.50758 * 110.97007 * 270.44808 * 18 17 14 20 20 C 1.38826 * 117.59144 * 209.21371 * 19 18 17 21 21 C 1.37997 * 120.52930 * 180.73337 * 20 19 18 22 22 C 1.38312 * 119.87418 * 0.13329 * 21 20 19 23 23 C 1.37778 * 119.89285 * 359.59160 * 22 21 20 24 24 C 1.37953 * 122.61331 * 29.32935 * 19 18 17 25 25 H 1.08994 * 109.47083 * 311.82228 * 1 2 3 26 26 H 1.08994 * 109.47284 * 71.82479 * 1 2 3 27 27 H 1.09000 * 109.46691 * 191.82249 * 1 2 3 28 28 H 0.96998 * 119.99759 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.83328 * 19.88258 * 13 12 2 30 30 H 1.09009 * 109.78142 * 259.05927 * 13 12 2 31 31 H 1.00907 * 110.99931 * 179.86219 * 16 14 13 32 32 H 1.00901 * 111.00097 * 303.81584 * 16 14 13 33 33 H 1.08999 * 109.69569 * 179.40961 * 17 14 13 34 34 H 1.08993 * 109.70023 * 299.95991 * 17 14 13 35 35 H 1.08998 * 109.17740 * 30.82823 * 18 17 14 36 36 H 1.08996 * 109.18127 * 150.11401 * 18 17 14 37 37 H 1.08003 * 119.73414 * 0.75723 * 20 19 18 38 38 H 1.07999 * 120.06280 * 180.15387 * 21 20 19 39 39 H 1.07998 * 120.05527 * 179.57584 * 22 21 20 40 40 H 1.08004 * 119.78867 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6533 -1.5883 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9426 0.8299 -2.6033 8 14 2.3225 -1.1191 -4.0081 9 1 1.8281 -2.5194 -4.0084 10 1 1.8268 -0.4194 -5.2205 11 1 3.8075 -1.1184 -4.0079 12 7 2.0197 -0.6926 1.1993 13 6 1.2549 -0.2888 2.3902 14 6 1.0134 -1.5398 3.2397 15 1 0.9057 -1.2545 4.2862 16 7 -0.2112 -2.2125 2.7858 17 6 2.2038 -2.4881 3.0882 18 6 3.4618 -1.7589 3.5585 19 6 4.1127 -1.0163 2.4193 20 6 5.4886 -0.8390 2.4702 21 6 6.1448 -0.1551 1.4672 22 6 5.4284 0.3614 0.4027 23 6 4.0634 0.1840 0.3432 24 6 3.3961 -0.5164 1.3517 25 1 -0.3633 0.6852 0.7658 26 1 -0.3633 0.3205 -0.9763 27 1 -0.3633 -1.0059 0.2106 28 1 0.7086 1.1615 -3.4843 29 1 0.3002 0.1418 2.0882 30 1 1.8246 0.4422 2.9642 31 1 -0.3906 -3.0429 3.3303 32 1 -1.0003 -1.5844 2.8136 33 1 2.0451 -3.3774 3.6981 34 1 2.3142 -2.7750 2.0425 35 1 3.1929 -1.0494 4.3411 36 1 4.1675 -2.4854 3.9610 37 1 6.0500 -1.2398 3.3012 38 1 7.2158 -0.0237 1.5131 39 1 5.9381 0.9030 -0.3804 40 1 3.5055 0.5884 -0.4885 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696373320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:54 Heat of formation + Delta-G solvation = 50.454789 kcal Electronic energy + Delta-G solvation = -20685.491058 eV Core-core repulsion = 17886.461455 eV Total energy + Delta-G solvation = -2799.029604 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.98018 -36.76379 -35.53841 -32.73925 -32.40780 -29.79769 -28.86185 -28.55612 -25.74892 -24.83339 -23.73328 -22.08597 -20.00143 -19.88458 -18.70885 -16.60819 -16.15617 -15.66058 -15.35557 -15.02714 -14.56441 -13.82025 -13.68505 -13.59977 -13.37218 -12.93434 -12.63182 -12.47234 -11.82263 -11.50024 -11.39650 -11.05022 -10.88125 -10.79673 -10.66500 -10.61769 -10.42287 -10.23922 -10.08506 -9.87179 -9.62439 -9.15734 -8.67237 -8.32303 -8.22792 -7.95453 -6.68266 -6.03625 -4.06295 2.14994 2.23917 3.34010 3.37320 3.42279 4.37492 4.50916 4.75160 4.87900 5.23891 5.26801 5.32587 5.45103 5.62919 5.69554 5.73111 5.88803 5.93816 6.02306 6.08853 6.18491 6.29595 6.44201 6.48313 6.59394 6.72383 6.78819 6.97075 7.01166 7.03393 7.16453 7.25656 7.37032 7.52699 7.56883 7.68962 7.78324 7.82908 7.87579 8.28470 8.38612 8.52500 8.98954 9.55379 11.01034 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016951 B = 0.009454 C = 0.006880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.433346 B = 2961.092036 C = 4068.495271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.209 3.791 3 H 0.012 0.988 4 C -0.492 4.492 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.892 5.892 8 Si 0.895 3.105 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.472 5.472 13 C 0.051 3.949 14 C 0.101 3.899 15 H 0.022 0.978 16 N -0.833 5.833 17 C -0.106 4.106 18 C -0.065 4.065 19 C -0.130 4.130 20 C -0.114 4.114 21 C -0.164 4.164 22 C -0.115 4.115 23 C -0.149 4.149 24 C 0.145 3.855 25 H 0.008 0.992 26 H 0.090 0.910 27 H 0.048 0.952 28 H 0.262 0.738 29 H 0.092 0.908 30 H 0.040 0.960 31 H 0.331 0.669 32 H 0.335 0.665 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.351 -2.051 11.182 11.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.105 3.895 3 H 0.029 0.971 4 C -0.531 4.531 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.184 5.184 13 C -0.075 4.075 14 C -0.011 4.011 15 H 0.040 0.960 16 N -0.363 5.363 17 C -0.144 4.144 18 C -0.102 4.102 19 C -0.133 4.133 20 C -0.132 4.132 21 C -0.184 4.184 22 C -0.134 4.134 23 C -0.169 4.169 24 C 0.045 3.955 25 H 0.027 0.973 26 H 0.109 0.891 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.110 0.890 30 H 0.058 0.942 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.066 0.934 34 H 0.116 0.884 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.441 -2.497 10.265 10.843 hybrid contribution 0.185 0.386 0.140 0.451 sum 2.627 -2.111 10.406 10.938 Atomic orbital electron populations 1.22014 0.97320 0.98928 1.01643 1.19522 0.92441 0.92176 0.85352 0.97086 1.21049 1.30289 1.12390 0.89338 0.91942 1.24885 0.95241 0.95167 0.98910 1.69876 1.36667 1.22915 1.23682 0.86591 0.79254 0.79870 0.82000 1.20203 1.21415 1.20198 1.58517 0.99770 1.55735 1.04412 1.22495 0.99378 0.94668 0.90947 1.21535 0.90774 0.94751 0.94054 0.96027 1.58592 1.05015 1.10324 1.62324 1.21492 0.92435 0.96401 1.04053 1.20327 0.96699 0.97753 0.95459 1.19273 0.93373 1.03415 0.97230 1.20762 0.93398 1.00469 0.98607 1.20777 0.98719 1.02718 0.96164 1.20946 0.94587 1.00178 0.97640 1.22487 0.94887 0.98473 1.01038 1.18722 0.90052 0.93393 0.93383 0.97323 0.89115 0.93315 0.92829 0.89018 0.94159 0.85679 0.85201 0.93390 0.88438 0.92404 0.91973 0.87506 0.87638 0.87260 0.81763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.07 37.16 0.30 -2.98 16 2 C 0.21 5.07 1.71 -68.87 -0.12 4.95 16 3 H 0.01 0.31 6.69 -51.93 -0.35 -0.04 16 4 C -0.49 -13.08 5.97 -34.44 -0.21 -13.29 16 5 H 0.06 1.75 7.66 -52.48 -0.40 1.35 16 6 C 0.06 1.59 5.25 -17.82 -0.09 1.49 16 7 N -0.89 -24.49 11.31 55.43 0.63 -23.87 16 8 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.47 -10.00 2.93 -164.63 -0.48 -10.49 16 13 C 0.05 0.92 4.87 -3.60 -0.02 0.90 16 14 C 0.10 1.53 3.21 -67.67 -0.22 1.31 16 15 H 0.02 0.30 8.07 -51.93 -0.42 -0.12 16 16 N -0.83 -11.94 9.24 -4.63 -0.04 -11.98 16 17 C -0.11 -1.67 5.23 -26.85 -0.14 -1.81 16 18 C -0.06 -0.98 5.28 -27.94 -0.15 -1.13 16 19 C -0.13 -2.37 5.46 -104.48 -0.57 -2.94 16 20 C -0.11 -1.91 9.55 -39.45 -0.38 -2.29 16 21 C -0.16 -2.81 10.05 -39.64 -0.40 -3.21 16 22 C -0.11 -2.19 10.04 -39.72 -0.40 -2.59 16 23 C -0.15 -3.25 7.85 -39.18 -0.31 -3.56 16 24 C 0.14 3.04 5.04 -83.86 -0.42 2.61 16 25 H 0.01 0.17 6.33 -51.93 -0.33 -0.16 16 26 H 0.09 2.35 5.84 -51.93 -0.30 2.05 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.09 1.66 4.55 -51.93 -0.24 1.42 16 30 H 0.04 0.71 7.67 -51.92 -0.40 0.31 16 31 H 0.33 3.98 9.04 -39.29 -0.36 3.62 16 32 H 0.34 4.38 8.83 -39.29 -0.35 4.04 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 1.92 6.76 -51.93 -0.35 1.57 16 35 H 0.06 0.82 7.73 -51.93 -0.40 0.42 16 36 H 0.06 0.84 8.00 -51.93 -0.42 0.42 16 37 H 0.11 1.50 8.02 -52.48 -0.42 1.08 16 38 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 40 H 0.17 4.06 4.39 -52.48 -0.23 3.83 16 LS Contribution 302.21 15.07 4.55 4.55 Total: -1.00 -27.69 302.21 -9.26 -36.95 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -5.78 Total: 11.09 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -3.11 Total: -22.53 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.10 Total: -46.33 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.69 -9.26 -36.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696373320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.404 kcal (2) G-P(sol) polarization free energy of solvation -27.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds