Wall clock time and date at job start Mon Mar 30 2020 06:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46654 * 2 1 4 4 C 1.50697 * 109.47185 * 239.99906 * 2 1 3 5 5 H 1.07994 * 119.99643 * 244.65331 * 4 2 1 6 6 C 1.37877 * 120.00035 * 64.65410 * 4 2 1 7 7 N 1.31517 * 120.00069 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99877 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47193 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46915 * 120.00229 * 8 6 4 11 11 H 1.48500 * 109.46768 * 239.99752 * 8 6 4 12 12 N 1.46906 * 109.47016 * 119.99550 * 2 1 3 13 13 C 1.46421 * 110.99615 * 203.02632 * 12 2 1 14 14 C 1.53383 * 108.66595 * 287.80848 * 13 12 2 15 15 C 1.53041 * 107.93193 * 291.77256 * 14 13 12 16 16 C 1.50808 * 109.65762 * 47.30229 * 15 14 13 17 17 C 1.38619 * 118.12421 * 164.51193 * 16 15 14 18 18 C 1.38051 * 120.48744 * 179.33053 * 17 16 15 19 19 C 1.50699 * 120.05655 * 180.31400 * 18 17 16 20 20 N 1.46900 * 109.46813 * 270.27140 * 19 18 17 21 21 C 1.38322 * 119.88577 * 0.58021 * 18 17 16 22 22 C 1.37800 * 119.95205 * 359.57678 * 21 18 17 23 23 C 1.38375 * 122.01200 * 344.34471 * 16 15 14 24 24 H 1.08999 * 109.47192 * 59.99992 * 1 2 3 25 25 H 1.09004 * 109.47083 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47387 * 299.99721 * 1 2 3 27 27 H 0.96998 * 120.00255 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.61294 * 47.56631 * 13 12 2 29 29 H 1.09003 * 109.60464 * 168.06229 * 13 12 2 30 30 H 1.08998 * 109.76622 * 51.37614 * 14 13 12 31 31 H 1.08997 * 109.77196 * 172.11323 * 14 13 12 32 32 H 1.09004 * 109.44273 * 167.35864 * 15 14 13 33 33 H 1.09000 * 109.44510 * 287.24983 * 15 14 13 34 34 H 1.07996 * 119.75397 * 359.56482 * 17 16 15 35 35 H 1.08996 * 109.47050 * 30.26550 * 19 18 17 36 36 H 1.08996 * 109.47265 * 150.27295 * 19 18 17 37 37 H 1.00904 * 111.00257 * 56.04352 * 20 19 18 38 38 H 1.00900 * 111.00069 * 180.02562 * 20 19 18 39 39 H 1.07999 * 120.02064 * 179.84718 * 21 18 17 40 40 H 1.08002 * 119.79293 * 180.17662 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5898 -1.6302 -1.1330 6 6 1.7802 -0.1861 -2.4804 7 7 1.1018 0.9343 -2.5989 8 14 2.4023 -1.0671 -4.0056 9 1 3.1314 -2.2968 -3.6041 10 1 1.2513 -1.4342 -4.8692 11 1 3.3181 -0.1707 -4.7560 12 7 2.0197 -0.6924 1.1995 13 6 3.3807 -0.2670 1.5321 14 6 4.3471 -0.8630 0.5008 15 6 4.3819 -2.3788 0.7087 16 6 2.9743 -2.9073 0.8256 17 6 2.7756 -4.2725 0.6903 18 6 1.5091 -4.8104 0.8022 19 6 1.3051 -6.2968 0.6604 20 7 1.0587 -6.6248 -0.7501 21 6 0.4270 -3.9821 1.0392 22 6 0.6164 -2.6236 1.1717 23 6 1.8955 -2.0743 1.0643 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.9241 1.3030 -3.4783 28 1 3.4411 0.8209 1.5039 29 1 3.6426 -0.6245 2.5279 30 1 3.9968 -0.6370 -0.5063 31 1 5.3440 -0.4472 0.6464 32 1 4.8770 -2.8502 -0.1404 33 1 4.9321 -2.6074 1.6215 34 1 3.6182 -4.9205 0.4996 35 1 2.1970 -6.8203 1.0047 36 1 0.4487 -6.6048 1.2601 37 1 1.8098 -6.2913 -1.3356 38 1 0.9182 -7.6166 -0.8715 39 1 -0.5651 -4.4003 1.1247 40 1 -0.2300 -1.9796 1.3596 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700794694.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:55 Heat of formation + Delta-G solvation = 31.134214 kcal Electronic energy + Delta-G solvation = -20569.642974 eV Core-core repulsion = 17769.775567 eV Total energy + Delta-G solvation = -2799.867407 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.05682 -37.06086 -34.12296 -33.69620 -32.35537 -29.63342 -29.36483 -28.53452 -25.24978 -24.89998 -23.50818 -21.93032 -21.13683 -20.54361 -18.25472 -16.72710 -15.94300 -15.63332 -15.41341 -14.66180 -14.34636 -14.20318 -13.82612 -13.52667 -13.09544 -12.85819 -12.68813 -12.48281 -11.93701 -11.77222 -11.39509 -11.36660 -11.14961 -10.99124 -10.82019 -10.63999 -10.45718 -10.28361 -9.94199 -9.83689 -9.56060 -9.00323 -8.61245 -8.41631 -8.25168 -7.93696 -6.87401 -6.03917 -4.10368 2.10631 2.12511 3.26403 3.35560 3.40097 4.33799 4.40981 4.92887 4.95368 5.23407 5.25900 5.28451 5.48607 5.58305 5.62756 5.74896 5.82731 5.95083 6.00416 6.21805 6.25371 6.33144 6.48812 6.52721 6.64057 6.72113 6.87400 6.99073 7.04992 7.13005 7.15753 7.23781 7.27252 7.30958 7.53862 7.55250 7.57294 7.77627 7.98720 8.05321 8.25551 8.55556 8.96125 9.53836 10.99121 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016062 B = 0.009220 C = 0.007887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.776516 B = 3036.012644 C = 3549.512078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.214 3.786 3 H 0.045 0.955 4 C -0.536 4.536 5 H 0.073 0.927 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.885 3.115 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.285 1.285 12 N -0.510 5.510 13 C 0.069 3.931 14 C -0.177 4.177 15 C -0.067 4.067 16 C -0.124 4.124 17 C -0.102 4.102 18 C -0.127 4.127 19 C 0.113 3.887 20 N -0.846 5.846 21 C -0.091 4.091 22 C -0.127 4.127 23 C 0.178 3.822 24 H 0.077 0.923 25 H 0.042 0.958 26 H 0.015 0.985 27 H 0.261 0.739 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.117 0.883 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.103 0.897 35 H 0.025 0.975 36 H 0.072 0.928 37 H 0.343 0.657 38 H 0.334 0.666 39 H 0.112 0.888 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.242 -9.005 6.464 11.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.111 3.889 3 H 0.063 0.937 4 C -0.575 4.575 5 H 0.091 0.909 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.713 3.287 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.211 1.211 12 N -0.226 5.226 13 C -0.059 4.059 14 C -0.215 4.215 15 C -0.104 4.104 16 C -0.127 4.127 17 C -0.122 4.122 18 C -0.128 4.128 19 C -0.017 4.017 20 N -0.376 5.376 21 C -0.110 4.110 22 C -0.147 4.147 23 C 0.080 3.920 24 H 0.096 0.904 25 H 0.060 0.940 26 H 0.034 0.966 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.135 0.865 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.121 0.879 35 H 0.043 0.957 36 H 0.091 0.909 37 H 0.155 0.845 38 H 0.146 0.854 39 H 0.130 0.870 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.228 -8.197 6.787 10.872 hybrid contribution 1.682 -1.224 -1.586 2.616 sum 3.910 -9.420 5.201 11.449 Atomic orbital electron populations 1.22024 0.97744 1.00024 0.99851 1.19407 0.92538 0.93689 0.83243 0.93723 1.21906 1.34967 1.09467 0.91110 0.90896 1.24901 0.94904 0.94757 0.98871 1.69921 1.39505 1.19408 1.23599 0.86633 0.78768 0.79895 0.83434 1.19675 1.20917 1.21149 1.59178 1.21357 1.03576 1.38501 1.21953 0.87322 0.99695 0.96901 1.22623 0.99262 0.94485 1.05125 1.20361 0.92955 0.96713 1.00370 1.19767 0.95809 0.93461 1.03638 1.20614 0.95894 0.94174 1.01477 1.19335 0.93475 0.94355 1.05643 1.20554 0.99116 0.92530 0.89535 1.58704 1.51616 1.20050 1.07198 1.20640 0.97510 0.93126 0.99744 1.21168 0.96613 0.94338 1.02559 1.18295 0.92315 0.89084 0.92328 0.90444 0.93957 0.96566 0.92948 0.91053 0.92539 0.86497 0.92943 0.91841 0.92358 0.87854 0.95678 0.90938 0.84453 0.85353 0.87019 0.85592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.50 37.16 0.32 -2.98 16 2 C 0.21 5.20 2.14 -68.86 -0.15 5.05 16 3 H 0.04 1.18 7.63 -51.93 -0.40 0.78 16 4 C -0.54 -13.90 5.46 -34.44 -0.19 -14.09 16 5 H 0.07 1.92 4.52 -52.49 -0.24 1.69 16 6 C 0.07 1.84 5.32 -17.82 -0.09 1.74 16 7 N -0.89 -24.65 11.67 55.43 0.65 -24.00 16 8 Si 0.88 21.25 29.54 -169.99 -5.02 16.23 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.51 -10.94 4.48 -165.06 -0.74 -11.68 16 13 C 0.07 1.32 5.79 -3.89 -0.02 1.29 16 14 C -0.18 -3.29 5.71 -26.51 -0.15 -3.44 16 15 C -0.07 -1.17 5.63 -27.81 -0.16 -1.33 16 16 C -0.12 -2.41 4.55 -104.38 -0.47 -2.88 16 17 C -0.10 -1.80 9.29 -39.51 -0.37 -2.16 16 18 C -0.13 -2.14 5.39 -104.66 -0.56 -2.71 16 19 C 0.11 1.52 6.91 -4.98 -0.03 1.48 16 20 N -0.85 -11.17 9.61 -11.41 -0.11 -11.28 16 21 C -0.09 -1.64 9.69 -39.71 -0.38 -2.02 16 22 C -0.13 -2.55 8.15 -39.23 -0.32 -2.87 16 23 C 0.18 3.72 3.84 -83.85 -0.32 3.40 16 24 H 0.08 2.02 6.45 -51.93 -0.33 1.68 16 25 H 0.04 0.98 4.99 -51.93 -0.26 0.72 16 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.07 1.32 7.74 -51.93 -0.40 0.92 16 29 H 0.06 0.98 8.11 -51.93 -0.42 0.55 16 30 H 0.12 2.60 4.75 -51.93 -0.25 2.35 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 35 H 0.03 0.30 8.09 -51.93 -0.42 -0.12 16 36 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 37 H 0.34 4.61 8.99 -39.29 -0.35 4.26 16 38 H 0.33 3.43 9.08 -39.29 -0.36 3.07 16 39 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.13 2.51 6.02 -52.49 -0.32 2.19 16 LS Contribution 304.44 15.07 4.59 4.59 Total: -1.00 -28.05 304.44 -9.38 -37.43 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -5.83 Total: 10.23 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -2.91 Total: -21.51 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.20 Total: -46.96 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.05 -9.38 -37.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700794694.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.563 kcal (2) G-P(sol) polarization free energy of solvation -28.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds