Wall clock time and date at job start Mon Mar 30 2020 06:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46654 * 2 1 4 4 C 1.50697 * 109.47185 * 239.99906 * 2 1 3 5 5 H 1.07994 * 119.99643 * 244.65331 * 4 2 1 6 6 C 1.37877 * 120.00035 * 64.65410 * 4 2 1 7 7 N 1.31517 * 120.00069 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99877 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47193 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46915 * 120.00229 * 8 6 4 11 11 H 1.48500 * 109.46768 * 239.99752 * 8 6 4 12 12 N 1.46906 * 109.47016 * 119.99550 * 2 1 3 13 13 C 1.46421 * 110.99615 * 203.02632 * 12 2 1 14 14 C 1.53383 * 108.66595 * 287.80848 * 13 12 2 15 15 C 1.53041 * 107.93193 * 291.77256 * 14 13 12 16 16 C 1.50808 * 109.65762 * 47.30229 * 15 14 13 17 17 C 1.38619 * 118.12421 * 164.51193 * 16 15 14 18 18 C 1.38051 * 120.48744 * 179.33053 * 17 16 15 19 19 C 1.50699 * 120.05655 * 180.31400 * 18 17 16 20 20 N 1.46900 * 109.46813 * 270.27140 * 19 18 17 21 21 C 1.38322 * 119.88577 * 0.58021 * 18 17 16 22 22 C 1.37800 * 119.95205 * 359.57678 * 21 18 17 23 23 C 1.38375 * 122.01200 * 344.34471 * 16 15 14 24 24 H 1.08999 * 109.47192 * 59.99992 * 1 2 3 25 25 H 1.09004 * 109.47083 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47387 * 299.99721 * 1 2 3 27 27 H 0.96998 * 120.00255 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.61294 * 47.56631 * 13 12 2 29 29 H 1.09003 * 109.60464 * 168.06229 * 13 12 2 30 30 H 1.08998 * 109.76622 * 51.37614 * 14 13 12 31 31 H 1.08997 * 109.77196 * 172.11323 * 14 13 12 32 32 H 1.09004 * 109.44273 * 167.35864 * 15 14 13 33 33 H 1.09000 * 109.44510 * 287.24983 * 15 14 13 34 34 H 1.07996 * 119.75397 * 359.56482 * 17 16 15 35 35 H 1.08996 * 109.47050 * 30.26550 * 19 18 17 36 36 H 1.08996 * 109.47265 * 150.27295 * 19 18 17 37 37 H 1.00904 * 111.00257 * 56.04352 * 20 19 18 38 38 H 1.00900 * 111.00069 * 180.02562 * 20 19 18 39 39 H 1.07999 * 120.02064 * 179.84718 * 21 18 17 40 40 H 1.08002 * 119.79293 * 180.17662 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5898 -1.6302 -1.1330 6 6 1.7802 -0.1861 -2.4804 7 7 1.1018 0.9343 -2.5989 8 14 2.4023 -1.0671 -4.0056 9 1 3.1314 -2.2968 -3.6041 10 1 1.2513 -1.4342 -4.8692 11 1 3.3181 -0.1707 -4.7560 12 7 2.0197 -0.6924 1.1995 13 6 3.3807 -0.2670 1.5321 14 6 4.3471 -0.8630 0.5008 15 6 4.3819 -2.3788 0.7087 16 6 2.9743 -2.9073 0.8256 17 6 2.7756 -4.2725 0.6903 18 6 1.5091 -4.8104 0.8022 19 6 1.3051 -6.2968 0.6604 20 7 1.0587 -6.6248 -0.7501 21 6 0.4270 -3.9821 1.0392 22 6 0.6164 -2.6236 1.1717 23 6 1.8955 -2.0743 1.0643 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.9241 1.3030 -3.4783 28 1 3.4411 0.8209 1.5039 29 1 3.6426 -0.6245 2.5279 30 1 3.9968 -0.6370 -0.5063 31 1 5.3440 -0.4472 0.6464 32 1 4.8770 -2.8502 -0.1404 33 1 4.9321 -2.6074 1.6215 34 1 3.6182 -4.9205 0.4996 35 1 2.1970 -6.8203 1.0047 36 1 0.4487 -6.6048 1.2601 37 1 1.8098 -6.2913 -1.3356 38 1 0.9182 -7.6166 -0.8715 39 1 -0.5651 -4.4003 1.1247 40 1 -0.2300 -1.9796 1.3596 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700794694.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:54 Heat of formation + Delta-G solvation = 13.533213 kcal Electronic energy + Delta-G solvation = -20570.406211 eV Core-core repulsion = 17769.775567 eV Total energy + Delta-G solvation = -2800.630643 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.56925 -38.48483 -35.69693 -34.99226 -34.16341 -31.19855 -30.85531 -30.10852 -27.27217 -26.17974 -24.96701 -23.41901 -22.54698 -22.28328 -19.72138 -18.59996 -17.32545 -17.13360 -16.92747 -16.26479 -15.79485 -15.45039 -15.32869 -15.05522 -14.74266 -14.33584 -14.23579 -13.86159 -13.35591 -13.29125 -13.16496 -13.01690 -12.84484 -12.69058 -12.45307 -12.30004 -12.19482 -12.00301 -11.66287 -11.32122 -11.23239 -10.90528 -10.46286 -9.87452 -9.53227 -9.36782 -8.49121 -8.03246 -6.17488 0.67253 0.69185 1.34658 1.39335 1.48076 2.41221 2.92240 3.17872 3.41597 3.88240 4.01450 4.03266 4.11975 4.23060 4.30159 4.43813 4.58309 4.59735 4.74974 4.82047 4.84670 4.89986 4.90331 5.03891 5.09098 5.11726 5.21402 5.25433 5.37656 5.49660 5.60532 5.67465 5.72941 5.83991 5.85989 5.96513 6.11563 6.24383 6.29468 6.42113 6.66130 6.88372 6.99645 7.48007 8.94993 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016062 B = 0.009220 C = 0.007887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.776516 B = 3036.012644 C = 3549.512078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.221 3.779 3 H 0.015 0.985 4 C -0.525 4.525 5 H 0.070 0.930 6 C 0.020 3.980 7 N -0.916 5.916 8 Si 0.938 3.062 9 H -0.269 1.269 10 H -0.286 1.286 11 H -0.282 1.282 12 N -0.515 5.515 13 C 0.066 3.934 14 C -0.172 4.172 15 C -0.064 4.064 16 C -0.136 4.136 17 C -0.107 4.107 18 C -0.120 4.120 19 C 0.116 3.884 20 N -0.858 5.858 21 C -0.099 4.099 22 C -0.145 4.145 23 C 0.146 3.854 24 H 0.051 0.949 25 H 0.044 0.956 26 H 0.027 0.973 27 H 0.259 0.741 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.129 0.871 35 H 0.046 0.954 36 H 0.084 0.916 37 H 0.341 0.659 38 H 0.352 0.648 39 H 0.128 0.872 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.389 -11.503 6.955 14.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.117 3.883 3 H 0.033 0.967 4 C -0.563 4.563 5 H 0.088 0.912 6 C -0.179 4.179 7 N -0.556 5.556 8 Si 0.765 3.235 9 H -0.194 1.194 10 H -0.213 1.213 11 H -0.208 1.208 12 N -0.231 5.231 13 C -0.062 4.062 14 C -0.211 4.211 15 C -0.101 4.101 16 C -0.139 4.139 17 C -0.126 4.126 18 C -0.121 4.121 19 C -0.014 4.014 20 N -0.389 5.389 21 C -0.118 4.118 22 C -0.165 4.165 23 C 0.049 3.951 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.147 0.853 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.154 0.846 38 H 0.166 0.834 39 H 0.146 0.854 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.383 -10.726 7.289 13.403 hybrid contribution 1.325 -0.522 -1.666 2.191 sum 4.708 -11.248 5.624 13.428 Atomic orbital electron populations 1.21867 0.97758 0.99882 0.99070 1.19130 0.92495 0.92322 0.84379 0.96720 1.22045 1.33742 1.08936 0.91625 0.91234 1.25543 0.95565 0.95498 1.01314 1.70031 1.41030 1.20688 1.23867 0.85801 0.78082 0.78994 0.80649 1.19357 1.21275 1.20782 1.59085 1.22848 1.04253 1.36923 1.22056 0.86424 0.99630 0.98063 1.22475 1.00235 0.95838 1.02539 1.20400 0.92347 0.95483 1.01898 1.20083 0.96260 0.94305 1.03247 1.20941 0.97129 0.93792 1.00757 1.19758 0.92821 0.96249 1.03291 1.20564 1.00692 0.90144 0.90030 1.58652 1.51671 1.21674 1.06924 1.20902 0.98932 0.92505 0.99491 1.21266 0.96291 0.95409 1.03499 1.18452 0.93289 0.88732 0.94642 0.93053 0.93723 0.95367 0.93144 0.91485 0.90443 0.90347 0.90413 0.91222 0.89679 0.85269 0.93580 0.89782 0.84642 0.83352 0.85369 0.86555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 8.50 71.98 0.61 -5.66 16 2 C 0.22 11.00 2.14 44.17 0.09 11.09 16 3 H 0.01 0.82 7.63 -2.39 -0.02 0.80 16 4 C -0.52 -27.58 5.46 25.60 0.14 -27.44 16 5 H 0.07 3.67 4.52 -2.91 -0.01 3.66 16 6 C 0.02 1.09 5.32 84.65 0.45 1.54 16 7 N -0.92 -52.34 11.67 21.45 0.25 -52.09 16 8 Si 0.94 43.94 29.54 68.60 2.03 45.96 16 9 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 N -0.51 -22.18 4.48 -676.12 -3.03 -25.21 16 13 C 0.07 2.46 5.79 86.52 0.50 2.96 16 14 C -0.17 -6.21 5.71 30.74 0.18 -6.03 16 15 C -0.06 -2.09 5.63 29.90 0.17 -1.92 16 16 C -0.14 -5.03 4.55 -19.71 -0.09 -5.12 16 17 C -0.11 -3.44 9.29 22.32 0.21 -3.24 16 18 C -0.12 -3.72 5.39 -19.89 -0.11 -3.82 16 19 C 0.12 2.69 6.91 85.56 0.59 3.28 16 20 N -0.86 -19.84 9.61 -190.02 -1.83 -21.67 16 21 C -0.10 -3.41 9.69 22.19 0.22 -3.20 16 22 C -0.15 -5.76 8.15 22.50 0.18 -5.58 16 23 C 0.15 6.03 3.84 38.30 0.15 6.17 16 24 H 0.05 2.77 6.45 -2.39 -0.02 2.75 16 25 H 0.04 2.13 4.99 -2.38 -0.01 2.12 16 26 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 28 H 0.07 2.50 7.74 -2.39 -0.02 2.48 16 29 H 0.08 2.55 8.11 -2.39 -0.02 2.53 16 30 H 0.08 3.48 4.75 -2.39 -0.01 3.47 16 31 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 33 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 35 H 0.05 0.90 8.09 -2.39 -0.02 0.89 16 36 H 0.08 1.78 8.09 -2.39 -0.02 1.76 16 37 H 0.34 8.14 8.99 -89.69 -0.81 7.33 16 38 H 0.35 6.01 9.08 -89.69 -0.81 5.20 16 39 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16 40 H 0.12 4.70 6.02 -2.91 -0.02 4.69 16 Total: -1.00 -60.38 304.44 0.15 -60.22 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: -0.56 Total: 29.74 kcal Atomic # 6 Polarization: -40.25 SS G_CDS: 3.29 Total: -36.96 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -4.60 Total: -98.97 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -60.38 0.15 -60.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700794694.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.757 kcal (2) G-P(sol) polarization free energy of solvation -60.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds