Wall clock time and date at job start Mon Mar 30 2020 06:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.45760 * 2 1 4 4 C 1.54380 * 110.40775 * 237.59199 * 2 1 3 5 5 C 1.54271 * 105.14388 * 217.41415 * 4 2 1 6 6 H 1.08997 * 110.31909 * 118.84685 * 5 4 2 7 7 N 1.46899 * 110.32273 * 241.05104 * 5 4 2 8 8 C 1.54372 * 105.05946 * 359.94930 * 5 4 2 9 9 N 1.48558 * 104.60024 * 23.85172 * 8 5 4 10 10 C 1.46894 * 111.00218 * 200.96026 * 9 8 5 11 11 H 1.08999 * 109.47307 * 71.85066 * 10 9 8 12 12 C 1.50702 * 109.47140 * 311.84943 * 10 9 8 13 13 H 1.07999 * 119.99966 * 332.83358 * 12 10 9 14 14 C 1.37875 * 120.00193 * 152.83307 * 12 10 9 15 15 N 1.31514 * 119.99886 * 354.27944 * 14 12 10 16 16 Si 1.86792 * 120.00199 * 174.27860 * 14 12 10 17 17 H 1.48498 * 109.47168 * 60.00129 * 16 14 12 18 18 H 1.48502 * 109.47043 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47390 * 300.00063 * 16 14 12 20 20 C 1.50706 * 109.46942 * 191.85414 * 10 9 8 21 21 C 1.38231 * 120.00149 * 46.47390 * 20 10 9 22 22 C 1.38242 * 119.99945 * 179.76988 * 21 20 10 23 23 C 1.38239 * 119.99590 * 0.50471 * 22 21 20 24 24 C 1.38229 * 120.00115 * 359.74240 * 23 22 21 25 25 C 1.38237 * 120.00396 * 0.02562 * 24 23 22 26 26 H 1.09001 * 109.46932 * 188.28078 * 1 2 3 27 27 H 1.09002 * 109.46826 * 308.27584 * 1 2 3 28 28 H 1.08996 * 109.47340 * 68.28002 * 1 2 3 29 29 H 1.08999 * 110.32288 * 98.47245 * 4 2 1 30 30 H 1.08993 * 110.32428 * 336.36043 * 4 2 1 31 31 H 1.00896 * 110.99580 * 180.02562 * 7 5 4 32 32 H 1.00897 * 111.00267 * 303.95636 * 7 5 4 33 33 H 1.09011 * 110.41036 * 142.63227 * 8 5 4 34 34 H 1.09001 * 110.41370 * 264.94945 * 8 5 4 35 35 H 0.96998 * 120.00711 * 180.02562 * 15 14 12 36 36 H 1.08000 * 120.00105 * 359.97438 * 21 20 10 37 37 H 1.07997 * 120.00126 * 180.22586 * 22 21 20 38 38 H 1.08003 * 119.99774 * 179.73014 * 23 22 21 39 39 H 1.08007 * 120.00089 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.00195 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0683 -0.7755 -1.2216 5 6 3.3174 -1.5207 -0.7074 6 1 3.1841 -2.5977 -0.8090 7 7 4.5117 -1.0818 -1.4415 8 6 3.4311 -1.1326 0.7825 9 7 2.0511 -0.7474 1.1754 10 6 2.0625 0.0996 2.3755 11 1 2.4469 1.0870 2.1197 12 6 2.9452 -0.5268 3.4241 13 1 3.0913 -1.5968 3.4379 14 6 3.5661 0.2660 4.3659 15 7 3.4802 1.5757 4.2827 16 14 4.5294 -0.5200 5.7599 17 1 5.6323 -1.3406 5.1984 18 1 5.0964 0.5415 6.6299 19 1 3.6258 -1.3859 6.5594 20 6 0.6602 0.2298 2.9118 21 6 -0.1371 -0.8920 3.0417 22 6 -1.4218 -0.7732 3.5381 23 6 -1.9128 0.4689 3.8948 24 6 -1.1173 1.5913 3.7601 25 6 0.1690 1.4719 3.2682 26 1 -0.3633 -1.0170 0.1480 27 1 -0.3633 0.6366 0.8068 28 1 -0.3634 0.3803 -0.9547 29 1 2.3415 -0.0839 -2.0186 30 1 1.3228 -1.4866 -1.5771 31 1 5.3352 -1.5636 -1.1133 32 1 4.3916 -1.2074 -2.4354 33 1 3.7706 -1.9841 1.3723 34 1 4.1122 -0.2905 0.9051 35 1 3.9173 2.1336 4.9449 36 1 0.2449 -1.8616 2.7584 37 1 -2.0434 -1.6501 3.6430 38 1 -2.9180 0.5623 4.2785 39 1 -1.5011 2.5618 4.0384 40 1 0.7904 2.3489 3.1626 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702642916.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:11 Heat of formation + Delta-G solvation = 29.187383 kcal Electronic energy + Delta-G solvation = -20340.899129 eV Core-core repulsion = 17540.947301 eV Total energy + Delta-G solvation = -2799.951828 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.03900 -37.69359 -34.26037 -32.78124 -31.02624 -30.10139 -29.87731 -27.65892 -26.01433 -24.80777 -22.62962 -21.56412 -20.31718 -19.71467 -19.09179 -16.36117 -16.07946 -15.46642 -15.16186 -14.81393 -14.38975 -14.10497 -13.66092 -13.59341 -13.29245 -12.57540 -12.39820 -12.25136 -11.75806 -11.67700 -11.50795 -11.20620 -11.19865 -10.96458 -10.68925 -10.53319 -10.30488 -10.25573 -10.09656 -9.99064 -9.79570 -9.23739 -8.55992 -8.42335 -7.93299 -7.52390 -7.33763 -6.11477 -4.14597 2.40332 2.43739 3.28657 3.33317 3.36348 4.35218 4.64098 4.86251 5.16015 5.22381 5.26189 5.31235 5.58292 5.74101 5.86234 5.86839 5.93982 6.05092 6.11916 6.21169 6.31689 6.37359 6.44447 6.54316 6.60732 6.69166 6.74900 6.86043 6.86571 6.98775 7.06948 7.31582 7.38488 7.42548 7.54835 7.64506 7.69376 7.80759 7.85228 8.10099 8.18574 8.47538 8.95585 9.49577 10.95852 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.012986 B = 0.010709 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.725006 B = 2614.051775 C = 4223.924919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.061 3.939 3 H 0.044 0.956 4 C -0.112 4.112 5 C 0.077 3.923 6 H 0.036 0.964 7 N -0.843 5.843 8 C 0.067 3.933 9 N -0.502 5.502 10 C 0.227 3.773 11 H 0.039 0.961 12 C -0.505 4.505 13 H 0.063 0.937 14 C 0.069 3.931 15 N -0.883 5.883 16 Si 0.894 3.106 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.010 4.010 21 C -0.098 4.098 22 C -0.138 4.138 23 C -0.154 4.154 24 C -0.133 4.133 25 C -0.116 4.116 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.042 0.958 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.339 0.661 32 H 0.333 0.667 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.264 0.736 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.128 -3.504 -7.752 9.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.048 4.048 3 H 0.062 0.938 4 C -0.150 4.150 5 C -0.034 4.034 6 H 0.054 0.946 7 N -0.373 5.373 8 C -0.061 4.061 9 N -0.227 5.227 10 C 0.120 3.880 11 H 0.057 0.943 12 C -0.543 4.543 13 H 0.081 0.919 14 C -0.135 4.135 15 N -0.520 5.520 16 Si 0.722 3.278 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.012 4.012 21 C -0.117 4.117 22 C -0.156 4.156 23 C -0.172 4.172 24 C -0.151 4.151 25 C -0.134 4.134 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.135 0.865 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.551 -3.065 -7.203 9.055 hybrid contribution 1.072 -0.558 0.592 1.345 sum -3.480 -3.623 -6.611 8.303 Atomic orbital electron populations 1.21798 0.94769 1.02174 1.00406 1.22551 0.95326 0.95872 0.91067 0.93804 1.22402 0.96037 0.98809 0.97784 1.22222 0.89703 0.95969 0.95528 0.94571 1.58833 1.05137 1.65624 1.07701 1.22688 0.91857 1.00804 0.90768 1.65391 1.16895 1.38055 1.02333 1.18585 0.88838 0.93319 0.87221 0.94316 1.20901 1.26964 0.93802 1.12676 0.91910 1.24949 0.95876 0.94788 0.97894 1.69902 1.43591 1.03258 1.35200 0.86618 0.80079 0.78968 0.82169 1.20180 1.21293 1.20104 1.20349 0.95221 0.91515 0.94073 1.20908 0.92924 0.99081 0.98750 1.20975 0.96572 0.96523 1.01505 1.20772 0.99094 0.93291 1.04076 1.20934 0.95053 0.97549 1.01538 1.21071 0.94460 0.98074 0.99834 0.92323 0.92138 0.93910 0.91638 0.91913 0.84905 0.85474 0.91041 0.92699 0.92667 0.86525 0.87854 0.88007 0.87830 0.86657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.14 37.16 0.30 -1.97 16 2 C 0.06 1.12 2.88 -65.98 -0.19 0.93 16 3 H 0.04 0.90 7.73 -51.93 -0.40 0.49 16 4 C -0.11 -1.73 6.29 -25.34 -0.16 -1.89 16 5 C 0.08 1.22 4.19 -66.33 -0.28 0.94 16 6 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 7 N -0.84 -11.54 9.15 -3.49 -0.03 -11.58 16 8 C 0.07 1.33 5.09 -2.19 -0.01 1.32 16 9 N -0.50 -10.40 4.44 -216.87 -0.96 -11.37 16 10 C 0.23 5.45 1.62 -70.02 -0.11 5.34 16 11 H 0.04 1.06 6.84 -51.93 -0.36 0.71 16 12 C -0.51 -13.25 7.14 -34.44 -0.25 -13.49 16 13 H 0.06 1.66 7.35 -52.49 -0.39 1.28 16 14 C 0.07 1.85 5.45 -17.82 -0.10 1.75 16 15 N -0.88 -24.55 12.88 55.43 0.71 -23.84 16 16 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C -0.01 -0.23 2.75 -104.62 -0.29 -0.52 16 21 C -0.10 -2.06 8.39 -39.58 -0.33 -2.39 16 22 C -0.14 -2.56 10.05 -39.58 -0.40 -2.96 16 23 C -0.15 -2.79 10.05 -39.58 -0.40 -3.18 16 24 C -0.13 -2.56 10.05 -39.58 -0.40 -2.96 16 25 C -0.12 -2.55 9.21 -39.58 -0.36 -2.92 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 1.13 5.89 -51.93 -0.31 0.82 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.96 7.94 -51.93 -0.41 0.54 16 30 H 0.06 0.89 7.86 -51.93 -0.41 0.48 16 31 H 0.34 4.20 9.08 -39.29 -0.36 3.84 16 32 H 0.33 3.74 9.01 -39.29 -0.35 3.39 16 33 H 0.07 1.45 7.55 -51.92 -0.39 1.06 16 34 H 0.05 1.23 7.91 -51.93 -0.41 0.82 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.12 2.46 7.92 -52.49 -0.42 2.04 16 37 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.10 1.55 8.06 -52.48 -0.42 1.13 16 39 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 40 H 0.12 2.68 7.99 -52.49 -0.42 2.26 16 LS Contribution 318.61 15.07 4.80 4.80 Total: -1.00 -27.60 318.61 -9.76 -37.36 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -6.29 Total: 10.55 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -2.97 Total: -22.00 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.28 Total: -46.78 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.60 -9.76 -37.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702642916.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.552 kcal (2) G-P(sol) polarization free energy of solvation -27.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds