Wall clock time and date at job start Mon Mar 30 2020 06:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.45760 * 2 1 4 4 C 1.54380 * 110.40775 * 237.59199 * 2 1 3 5 5 C 1.54271 * 105.14388 * 217.41415 * 4 2 1 6 6 H 1.08997 * 110.31909 * 118.84685 * 5 4 2 7 7 N 1.46899 * 110.32273 * 241.05104 * 5 4 2 8 8 C 1.54372 * 105.05946 * 359.94930 * 5 4 2 9 9 N 1.48558 * 104.60024 * 23.85172 * 8 5 4 10 10 C 1.46894 * 111.00218 * 200.96026 * 9 8 5 11 11 H 1.08999 * 109.47307 * 71.85066 * 10 9 8 12 12 C 1.50702 * 109.47140 * 311.84943 * 10 9 8 13 13 H 1.07999 * 119.99966 * 332.83358 * 12 10 9 14 14 C 1.37875 * 120.00193 * 152.83307 * 12 10 9 15 15 N 1.31514 * 119.99886 * 354.27944 * 14 12 10 16 16 Si 1.86792 * 120.00199 * 174.27860 * 14 12 10 17 17 H 1.48498 * 109.47168 * 60.00129 * 16 14 12 18 18 H 1.48502 * 109.47043 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47390 * 300.00063 * 16 14 12 20 20 C 1.50706 * 109.46942 * 191.85414 * 10 9 8 21 21 C 1.38231 * 120.00149 * 46.47390 * 20 10 9 22 22 C 1.38242 * 119.99945 * 179.76988 * 21 20 10 23 23 C 1.38239 * 119.99590 * 0.50471 * 22 21 20 24 24 C 1.38229 * 120.00115 * 359.74240 * 23 22 21 25 25 C 1.38237 * 120.00396 * 0.02562 * 24 23 22 26 26 H 1.09001 * 109.46932 * 188.28078 * 1 2 3 27 27 H 1.09002 * 109.46826 * 308.27584 * 1 2 3 28 28 H 1.08996 * 109.47340 * 68.28002 * 1 2 3 29 29 H 1.08999 * 110.32288 * 98.47245 * 4 2 1 30 30 H 1.08993 * 110.32428 * 336.36043 * 4 2 1 31 31 H 1.00896 * 110.99580 * 180.02562 * 7 5 4 32 32 H 1.00897 * 111.00267 * 303.95636 * 7 5 4 33 33 H 1.09011 * 110.41036 * 142.63227 * 8 5 4 34 34 H 1.09001 * 110.41370 * 264.94945 * 8 5 4 35 35 H 0.96998 * 120.00711 * 180.02562 * 15 14 12 36 36 H 1.08000 * 120.00105 * 359.97438 * 21 20 10 37 37 H 1.07997 * 120.00126 * 180.22586 * 22 21 20 38 38 H 1.08003 * 119.99774 * 179.73014 * 23 22 21 39 39 H 1.08007 * 120.00089 * 179.97438 * 24 23 22 40 40 H 1.07998 * 120.00195 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0683 -0.7755 -1.2216 5 6 3.3174 -1.5207 -0.7074 6 1 3.1841 -2.5977 -0.8090 7 7 4.5117 -1.0818 -1.4415 8 6 3.4311 -1.1326 0.7825 9 7 2.0511 -0.7474 1.1754 10 6 2.0625 0.0996 2.3755 11 1 2.4469 1.0870 2.1197 12 6 2.9452 -0.5268 3.4241 13 1 3.0913 -1.5968 3.4379 14 6 3.5661 0.2660 4.3659 15 7 3.4802 1.5757 4.2827 16 14 4.5294 -0.5200 5.7599 17 1 5.6323 -1.3406 5.1984 18 1 5.0964 0.5415 6.6299 19 1 3.6258 -1.3859 6.5594 20 6 0.6602 0.2298 2.9118 21 6 -0.1371 -0.8920 3.0417 22 6 -1.4218 -0.7732 3.5381 23 6 -1.9128 0.4689 3.8948 24 6 -1.1173 1.5913 3.7601 25 6 0.1690 1.4719 3.2682 26 1 -0.3633 -1.0170 0.1480 27 1 -0.3633 0.6366 0.8068 28 1 -0.3634 0.3803 -0.9547 29 1 2.3415 -0.0839 -2.0186 30 1 1.3228 -1.4866 -1.5771 31 1 5.3352 -1.5636 -1.1133 32 1 4.3916 -1.2074 -2.4354 33 1 3.7706 -1.9841 1.3723 34 1 4.1122 -0.2905 0.9051 35 1 3.9173 2.1336 4.9449 36 1 0.2449 -1.8616 2.7584 37 1 -2.0434 -1.6501 3.6430 38 1 -2.9180 0.5623 4.2785 39 1 -1.5011 2.5618 4.0384 40 1 0.7904 2.3489 3.1626 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702642916.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:11 Heat of formation + Delta-G solvation = 11.250791 kcal Electronic energy + Delta-G solvation = -20341.676918 eV Core-core repulsion = 17540.947301 eV Total energy + Delta-G solvation = -2800.729617 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.62845 -39.20833 -35.87167 -34.44937 -32.73058 -31.63197 -31.45374 -29.06487 -27.83645 -26.38725 -24.32920 -23.15185 -21.90471 -21.22963 -20.63698 -18.33660 -17.57005 -17.01418 -16.77731 -16.09211 -16.05043 -15.77182 -15.26908 -15.13957 -14.77865 -14.16220 -14.00634 -13.92881 -13.35401 -13.30330 -12.97989 -12.87007 -12.84169 -12.71102 -12.38065 -12.13513 -11.88728 -11.75365 -11.68794 -11.57166 -11.46669 -11.06239 -10.61211 -9.56859 -9.51862 -9.16985 -9.10168 -8.16038 -6.25768 0.80345 0.86330 1.37482 1.39502 1.46084 2.37782 3.07629 3.24137 3.39394 3.79068 3.87226 3.91354 4.22028 4.32306 4.35857 4.42302 4.48351 4.63364 4.67632 4.73205 4.90252 4.94783 4.98267 5.00949 5.08785 5.14510 5.17113 5.29956 5.33989 5.44927 5.50205 5.52385 5.66085 5.82697 5.85451 6.02395 6.16629 6.27179 6.35433 6.48450 6.64973 6.71220 6.91991 7.41447 8.89865 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.012986 B = 0.010709 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.725006 B = 2614.051775 C = 4223.924919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.056 3.944 3 H 0.012 0.988 4 C -0.102 4.102 5 C 0.090 3.910 6 H 0.055 0.945 7 N -0.850 5.850 8 C 0.066 3.934 9 N -0.499 5.499 10 C 0.238 3.762 11 H -0.012 1.012 12 C -0.511 4.511 13 H 0.056 0.944 14 C 0.020 3.980 15 N -0.914 5.914 16 Si 0.951 3.049 17 H -0.268 1.268 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.028 4.028 21 C -0.109 4.109 22 C -0.130 4.130 23 C -0.144 4.144 24 C -0.132 4.132 25 C -0.141 4.141 26 H 0.063 0.937 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.347 0.653 32 H 0.352 0.648 33 H 0.060 0.940 34 H 0.016 0.984 35 H 0.261 0.739 36 H 0.111 0.889 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.128 0.872 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.096 -5.256 -8.342 11.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.053 4.053 3 H 0.030 0.970 4 C -0.140 4.140 5 C -0.022 4.022 6 H 0.073 0.927 7 N -0.383 5.383 8 C -0.063 4.063 9 N -0.224 5.224 10 C 0.131 3.869 11 H 0.006 0.994 12 C -0.549 4.549 13 H 0.074 0.926 14 C -0.180 4.180 15 N -0.552 5.552 16 Si 0.776 3.224 17 H -0.193 1.193 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.029 4.029 21 C -0.128 4.128 22 C -0.147 4.147 23 C -0.162 4.162 24 C -0.150 4.150 25 C -0.160 4.160 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.160 0.840 32 H 0.166 0.834 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.129 0.871 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.146 0.854 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.516 -4.833 -7.820 11.268 hybrid contribution 1.637 0.014 0.733 1.794 sum -4.880 -4.819 -7.087 9.862 Atomic orbital electron populations 1.21698 0.93214 1.02070 1.01089 1.22637 0.96571 0.94477 0.91582 0.97030 1.22375 0.96233 0.99048 0.96377 1.22027 0.90710 0.96926 0.92529 0.92737 1.58711 1.04712 1.65970 1.08889 1.22660 0.90712 0.98789 0.94121 1.65388 1.17261 1.37341 1.02362 1.18269 0.89680 0.90922 0.88070 0.99376 1.21120 1.27307 0.93386 1.13125 0.92595 1.25667 0.97068 0.95189 1.00095 1.70051 1.44853 1.04376 1.35924 0.85721 0.79010 0.78148 0.79493 1.19348 1.21136 1.19811 1.20174 0.94798 0.92568 0.95333 1.20902 0.94076 0.97981 0.99806 1.21354 0.95597 0.98235 0.99548 1.21211 1.00471 0.92234 1.02299 1.21212 0.93780 0.99567 1.00418 1.20994 0.95917 0.97046 1.02003 0.91809 0.94347 0.91133 0.90392 0.89471 0.84015 0.83352 0.92121 0.96557 0.93004 0.87065 0.84283 0.83903 0.85428 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.08 8.14 71.98 0.59 -3.49 16 2 C 0.06 2.11 2.88 45.03 0.13 2.24 16 3 H 0.01 0.50 7.73 -2.39 -0.02 0.49 16 4 C -0.10 -2.98 6.29 31.49 0.20 -2.78 16 5 C 0.09 2.73 4.19 45.81 0.19 2.92 16 6 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 7 N -0.85 -22.25 9.15 -164.97 -1.51 -23.76 16 8 C 0.07 2.72 5.09 86.45 0.44 3.16 16 9 N -0.50 -21.45 4.44 -840.05 -3.73 -25.18 16 10 C 0.24 12.13 1.62 43.43 0.07 12.20 16 11 H -0.01 -0.69 6.84 -2.39 -0.02 -0.71 16 12 C -0.51 -28.06 7.14 25.60 0.18 -27.88 16 13 H 0.06 3.07 7.35 -2.91 -0.02 3.05 16 14 C 0.02 1.13 5.45 84.65 0.46 1.59 16 15 N -0.91 -53.71 12.88 21.45 0.28 -53.43 16 16 Si 0.95 44.41 29.54 68.60 2.03 46.43 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 19 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 20 C -0.03 -1.29 2.75 -19.86 -0.05 -1.34 16 21 C -0.11 -4.51 8.39 22.27 0.19 -4.32 16 22 C -0.13 -4.43 10.05 22.27 0.22 -4.21 16 23 C -0.14 -4.72 10.05 22.27 0.22 -4.49 16 24 C -0.13 -4.93 10.05 22.27 0.22 -4.71 16 25 C -0.14 -6.45 9.21 22.27 0.21 -6.25 16 26 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.04 1.43 5.89 -2.39 -0.01 1.42 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.08 2.11 7.94 -2.39 -0.02 2.09 16 30 H 0.09 2.17 7.86 -2.39 -0.02 2.15 16 31 H 0.35 8.26 9.08 -89.70 -0.81 7.45 16 32 H 0.35 7.07 9.01 -89.70 -0.81 6.27 16 33 H 0.06 2.56 7.55 -2.38 -0.02 2.54 16 34 H 0.02 0.78 7.91 -2.39 -0.02 0.76 16 35 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 36 H 0.11 4.64 7.92 -2.91 -0.02 4.62 16 37 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 38 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 39 H 0.13 4.07 8.06 -2.91 -0.02 4.04 16 40 H 0.09 4.34 7.99 -2.91 -0.02 4.31 16 Total: -1.00 -63.62 318.61 -0.26 -63.88 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: -0.59 Total: 29.43 kcal Atomic # 6 Polarization: -40.64 SS G_CDS: 3.27 Total: -37.37 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -4.97 Total: -102.37 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -63.62 -0.26 -63.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702642916.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.131 kcal (2) G-P(sol) polarization free energy of solvation -63.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds