Wall clock time and date at job start Mon Mar 30 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 115.55518 * 2 1 4 4 C 1.53005 * 117.49851 * 145.66896 * 2 1 3 5 5 C 1.53002 * 117.49942 * 214.32727 * 2 1 3 6 6 C 1.52999 * 117.49767 * 359.97438 * 5 2 1 7 7 C 1.53002 * 117.49747 * 144.99877 * 5 2 1 8 8 N 1.46502 * 109.46989 * 298.70366 * 7 5 2 9 9 C 1.39854 * 119.99934 * 182.71622 * 8 7 5 10 10 C 1.39602 * 119.83932 * 359.71846 * 9 8 7 11 11 C 1.38056 * 120.55003 * 179.76328 * 10 9 8 12 12 C 1.38733 * 120.22151 * 0.51432 * 11 10 9 13 13 N 1.38856 * 120.16620 * 179.72076 * 12 11 10 14 14 C 1.41570 * 119.67196 * 359.74650 * 12 11 10 15 15 C 1.41022 * 120.26955 * 179.97438 * 14 12 11 16 16 H 1.08008 * 119.99996 * 334.22938 * 15 14 12 17 17 C 1.39880 * 120.00406 * 154.22432 * 15 14 12 18 18 N 1.30901 * 119.99694 * 343.41502 * 17 15 14 19 19 Si 1.86802 * 120.00455 * 163.41127 * 17 15 14 20 20 H 1.48500 * 109.46669 * 60.00088 * 19 17 15 21 21 H 1.48496 * 109.47155 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47221 * 300.00536 * 19 17 15 23 23 C 1.38004 * 119.84237 * 179.97438 * 9 8 7 24 24 H 1.09002 * 109.47352 * 325.58001 * 1 2 3 25 25 H 1.09002 * 109.47011 * 85.58537 * 1 2 3 26 26 H 1.08996 * 109.47246 * 205.58282 * 1 2 3 27 27 H 1.09004 * 117.49869 * 215.00116 * 4 2 1 28 28 H 1.08999 * 117.49936 * 0.02562 * 4 2 1 29 29 H 1.09001 * 109.47128 * 56.94919 * 6 5 2 30 30 H 1.09000 * 109.47317 * 176.94549 * 6 5 2 31 31 H 1.08997 * 109.47331 * 296.94712 * 6 5 2 32 32 H 1.08998 * 109.47097 * 58.70484 * 7 5 2 33 33 H 1.08996 * 109.47029 * 178.70036 * 7 5 2 34 34 H 0.96996 * 120.00057 * 2.71006 * 8 7 5 35 35 H 1.08007 * 119.72632 * 0.02562 * 10 9 8 36 36 H 1.08005 * 119.89246 * 180.26077 * 11 10 9 37 37 H 0.97005 * 120.00405 * 180.02562 * 13 12 11 38 38 H 0.97005 * 119.99963 * 0.02562 * 13 12 11 39 39 H 0.97002 * 120.00308 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.10953 * 359.95140 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1208 0.7654 5 6 2.2364 -1.1208 -0.7653 6 6 1.3588 -2.1561 -1.4716 7 6 3.5487 -0.7753 -1.4721 8 7 3.3020 0.2553 -2.4836 9 6 4.3465 0.6953 -3.3029 10 6 5.6243 0.1543 -3.1500 11 6 6.6650 0.5743 -3.9540 12 6 6.4531 1.5492 -4.9181 13 7 7.5020 1.9750 -5.7222 14 6 5.1622 2.1082 -5.0775 15 6 4.9328 3.1003 -6.0532 16 1 5.7455 3.7293 -6.3852 17 6 3.6527 3.2696 -6.5910 18 7 2.7535 2.3290 -6.4490 19 14 3.2262 4.8380 -7.5116 20 1 4.1292 4.9865 -8.6812 21 1 1.8180 4.7708 -7.9782 22 1 3.3924 6.0039 -6.6069 23 6 4.1104 1.6660 -4.2550 24 1 -0.3634 0.8477 0.5809 25 1 -0.3633 0.0791 -1.0246 26 1 -0.3633 -0.9269 0.4437 27 1 3.1713 -0.8747 1.2689 28 1 1.6112 -1.8583 1.2686 29 1 0.6909 -1.6509 -2.1693 30 1 1.9909 -2.8571 -2.0166 31 1 0.7693 -2.6978 -0.7320 32 1 4.2675 -0.4033 -0.7421 33 1 3.9483 -1.6681 -1.9530 34 1 2.4141 0.6325 -2.5851 35 1 5.7993 -0.6022 -2.3992 36 1 7.6484 0.1455 -3.8294 37 1 7.3512 2.6570 -6.3953 38 1 8.3855 1.5903 -5.6109 39 1 1.8656 2.4465 -6.8216 40 1 3.1212 2.0847 -4.3681 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704017933.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:59 Heat of formation + Delta-G solvation = 19.228848 kcal Electronic energy + Delta-G solvation = -19172.927692 eV Core-core repulsion = 16372.544030 eV Total energy + Delta-G solvation = -2800.383662 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.15520 -39.33338 -36.44298 -35.31735 -33.27293 -31.30138 -30.63946 -28.85488 -28.48086 -26.68767 -25.66613 -23.06448 -22.03188 -21.41809 -19.61029 -18.87400 -17.86117 -17.24420 -16.74259 -16.54583 -16.11489 -15.71327 -15.19488 -14.54875 -14.39539 -14.22460 -14.16738 -13.74822 -13.65796 -13.37083 -13.12789 -13.03136 -12.87044 -12.77589 -12.69045 -12.34221 -12.13115 -11.98047 -11.75461 -11.36662 -11.18943 -10.91591 -10.74479 -10.46319 -9.38907 -9.13650 -8.49432 -7.28305 -5.99652 1.13628 1.41175 1.50343 1.53412 1.66856 2.27592 2.60254 2.92747 3.22139 3.68943 3.78112 3.81246 3.97307 4.02023 4.09846 4.45759 4.60302 4.65125 4.77210 4.84688 4.86116 4.93127 4.95325 5.01350 5.07293 5.14248 5.23709 5.24242 5.35600 5.36764 5.43724 5.48514 5.68167 5.89826 6.06995 6.17654 6.29619 6.57720 6.97947 7.07179 7.14806 7.28469 7.48673 7.67644 8.51389 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019302 B = 0.005501 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.313428 B = 5088.456153 C = 6202.325875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.150 4.150 3 H 0.087 0.913 4 C -0.146 4.146 5 C -0.146 4.146 6 C -0.106 4.106 7 C 0.177 3.823 8 N -0.753 5.753 9 C 0.174 3.826 10 C -0.261 4.261 11 C -0.157 4.157 12 C 0.068 3.932 13 N -0.879 5.879 14 C 0.062 3.938 15 C -0.494 4.494 16 H 0.074 0.926 17 C 0.034 3.966 18 N -0.832 5.832 19 Si 0.974 3.026 20 H -0.260 1.260 21 H -0.275 1.275 22 H -0.266 1.266 23 C -0.227 4.227 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.115 0.885 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.045 0.955 34 H 0.388 0.612 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.390 0.610 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.343 -4.996 9.728 11.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.169 4.169 3 H 0.105 0.895 4 C -0.183 4.183 5 C -0.147 4.147 6 C -0.163 4.163 7 C 0.053 3.947 8 N -0.387 5.387 9 C 0.073 3.927 10 C -0.285 4.285 11 C -0.181 4.181 12 C -0.034 4.034 13 N -0.423 5.423 14 C 0.057 3.943 15 C -0.525 4.525 16 H 0.092 0.908 17 C -0.179 4.179 18 N -0.460 5.460 19 Si 0.797 3.203 20 H -0.184 1.184 21 H -0.199 1.199 22 H -0.191 1.191 23 C -0.251 4.251 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.133 0.867 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.221 0.779 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.218 0.782 38 H 0.218 0.782 39 H 0.089 0.911 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.547 -5.237 9.816 11.677 hybrid contribution -0.166 0.916 -0.919 1.308 sum -3.713 -4.321 8.897 10.565 Atomic orbital electron populations 1.21316 0.91673 1.02624 1.01720 1.22393 0.96113 0.94000 1.04344 0.89485 1.23328 1.02652 1.00929 0.91438 1.21730 0.97292 1.01382 0.94253 1.21259 0.98373 0.96697 0.99955 1.20607 0.94628 0.90181 0.89321 1.44386 1.09457 1.45309 1.39527 1.17647 0.88405 0.94827 0.91773 1.19903 0.92109 1.09008 1.07520 1.20040 0.98318 1.00820 0.98963 1.18026 0.89851 0.98834 0.96709 1.41670 1.09006 1.48887 1.42729 1.17360 0.90188 0.93666 0.93107 1.19366 0.95645 1.16713 1.20769 0.90770 1.26568 0.95711 0.99446 0.96153 1.69967 1.05329 1.32483 1.38188 0.85376 0.77800 0.78452 0.78715 1.18442 1.19943 1.19065 1.20437 0.99746 1.04671 1.00289 0.91673 0.92905 0.91206 0.88644 0.86664 0.93124 0.92797 0.90557 0.94001 0.93681 0.77933 0.87771 0.87165 0.78219 0.78218 0.91064 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 9.20 71.98 0.66 -1.59 16 2 C -0.15 -3.49 5.85 -10.79 -0.06 -3.55 16 3 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 4 C -0.15 -2.92 9.47 30.62 0.29 -2.62 16 5 C -0.15 -3.64 2.17 -52.16 -0.11 -3.75 16 6 C -0.11 -2.41 8.93 71.98 0.64 -1.77 16 7 C 0.18 5.68 4.86 86.38 0.42 6.10 16 8 N -0.75 -30.02 5.66 -339.43 -1.92 -31.94 16 9 C 0.17 8.42 6.64 38.13 0.25 8.67 16 10 C -0.26 -12.05 9.30 22.56 0.21 -11.84 16 11 C -0.16 -7.24 9.86 22.34 0.22 -7.02 16 12 C 0.07 3.36 6.79 38.97 0.26 3.62 16 13 N -0.88 -36.18 8.98 -50.31 -0.45 -36.63 16 14 C 0.06 3.43 5.58 -21.18 -0.12 3.31 16 15 C -0.49 -26.85 8.49 23.35 0.20 -26.65 16 16 H 0.07 3.81 6.69 -2.91 -0.02 3.79 16 17 C 0.03 1.77 5.15 85.23 0.44 2.21 16 18 N -0.83 -45.25 10.96 21.82 0.24 -45.01 16 19 Si 0.97 39.64 29.59 68.60 2.03 41.67 16 20 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 21 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 22 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 23 C -0.23 -12.39 8.50 22.81 0.19 -12.20 16 24 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.05 1.11 7.90 -2.39 -0.02 1.09 16 26 H 0.07 1.12 7.90 -2.39 -0.02 1.10 16 27 H 0.10 1.87 8.06 -2.38 -0.02 1.85 16 28 H 0.12 1.81 7.95 -2.39 -0.02 1.79 16 29 H 0.05 1.24 7.87 -2.39 -0.02 1.22 16 30 H 0.05 1.29 7.89 -2.39 -0.02 1.27 16 31 H 0.08 1.36 7.88 -2.39 -0.02 1.34 16 32 H 0.04 1.35 7.82 -2.39 -0.02 1.34 16 33 H 0.05 1.50 7.59 -2.39 -0.02 1.48 16 34 H 0.39 15.32 8.30 -92.71 -0.77 14.55 16 35 H 0.10 4.29 6.69 -2.91 -0.02 4.27 16 36 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 37 H 0.39 15.85 7.05 -92.70 -0.65 15.20 16 38 H 0.39 13.26 8.83 -92.70 -0.82 12.44 16 39 H 0.28 13.96 8.30 -92.71 -0.77 13.19 16 40 H 0.10 5.53 6.20 -2.91 -0.02 5.52 16 Total: -1.00 -61.39 324.57 2.22 -59.17 By element: Atomic # 1 Polarization: 61.00 SS G_CDS: -1.18 Total: 59.83 kcal Atomic # 6 Polarization: -50.58 SS G_CDS: 3.50 Total: -47.08 kcal Atomic # 7 Polarization: -111.45 SS G_CDS: -2.13 Total: -113.59 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -61.39 2.22 -59.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704017933.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.404 kcal (2) G-P(sol) polarization free energy of solvation -61.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds