Wall clock time and date at job start Mon Mar 30 2020 06:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 115.56297 * 2 1 4 4 C 1.52997 * 117.50094 * 214.29664 * 2 1 3 5 5 C 1.52993 * 60.00421 * 252.51758 * 4 2 1 6 6 C 1.53005 * 117.51930 * 252.51664 * 5 4 2 7 7 C 1.52999 * 117.49987 * 107.49205 * 5 4 2 8 8 N 1.46504 * 109.47007 * 225.86022 * 7 5 4 9 9 C 1.39854 * 119.99570 * 180.39928 * 8 7 5 10 10 C 1.39601 * 119.84390 * 359.97438 * 9 8 7 11 11 C 1.38058 * 120.55177 * 179.97438 * 10 9 8 12 12 C 1.38738 * 120.21839 * 359.97438 * 11 10 9 13 13 N 1.38860 * 120.16401 * 179.97438 * 12 11 10 14 14 C 1.41566 * 119.67488 * 359.97438 * 12 11 10 15 15 C 1.41023 * 120.26526 * 180.02562 * 14 12 11 16 16 H 1.08002 * 120.00447 * 24.84982 * 15 14 12 17 17 C 1.39888 * 119.99591 * 204.84849 * 15 14 12 18 18 N 1.30903 * 119.99928 * 15.10841 * 17 15 14 19 19 Si 1.86800 * 119.99787 * 195.10064 * 17 15 14 20 20 H 1.48493 * 109.47090 * 60.00249 * 19 17 15 21 21 H 1.48504 * 109.47004 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47298 * 300.00122 * 19 17 15 23 23 C 1.38011 * 119.83582 * 179.72669 * 9 8 7 24 24 H 1.08997 * 109.47116 * 274.31949 * 1 2 3 25 25 H 1.09003 * 109.46834 * 34.31938 * 1 2 3 26 26 H 1.08997 * 109.46771 * 154.31319 * 1 2 3 27 27 H 1.09003 * 117.49834 * 0.02562 * 4 2 1 28 28 H 1.08999 * 117.49799 * 145.02416 * 4 2 1 29 29 H 1.08998 * 109.46869 * 134.48813 * 6 5 4 30 30 H 1.08998 * 109.47135 * 254.49671 * 6 5 4 31 31 H 1.09001 * 109.46463 * 14.49503 * 6 5 4 32 32 H 1.09007 * 109.47090 * 345.85870 * 7 5 4 33 33 H 1.08993 * 109.47371 * 105.85745 * 7 5 4 34 34 H 0.96997 * 119.99845 * 0.40283 * 8 7 5 35 35 H 1.07999 * 119.72139 * 359.97438 * 10 9 8 36 36 H 1.07997 * 119.89087 * 180.02562 * 11 10 9 37 37 H 0.97003 * 119.99938 * 359.97438 * 13 12 11 38 38 H 0.97001 * 120.00299 * 180.02562 * 13 12 11 39 39 H 0.97005 * 119.99396 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.11082 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2365 -1.1211 -0.7647 5 6 2.2364 -1.1209 0.7652 6 6 3.5486 -0.7757 1.4722 7 6 1.3587 -2.1560 1.4718 8 7 0.6097 -1.5065 2.5504 9 6 -0.2595 -2.2571 3.3485 10 6 -0.4112 -3.6249 3.1142 11 6 -1.2648 -4.3800 3.8934 12 6 -1.9824 -3.7849 4.9210 13 7 -2.8411 -4.5454 5.7037 14 6 -1.8349 -2.3988 5.1676 15 6 -2.5578 -1.7813 6.2091 16 1 -2.8965 -2.3657 7.0518 17 6 -2.8362 -0.4116 6.1508 18 7 -2.6973 0.2370 5.0223 19 14 -3.4063 0.4916 7.6833 20 1 -2.3671 0.3814 8.7383 21 1 -3.6330 1.9229 7.3587 22 1 -4.6727 -0.1114 8.1710 23 6 -0.9592 -1.6429 4.3672 24 1 -0.3633 0.0774 1.0247 25 1 -0.3633 0.8488 -0.5794 26 1 -0.3633 -0.9261 -0.4454 27 1 1.6113 -1.8585 -1.2682 28 1 3.1716 -0.8754 -1.2680 29 1 3.3519 -0.0693 2.2787 30 1 3.9893 -1.6837 1.8839 31 1 4.2394 -0.3282 0.7576 32 1 0.6613 -2.5906 0.7556 33 1 1.9881 -2.9421 1.8888 34 1 0.7166 -0.5558 2.7108 35 1 0.1438 -4.0963 2.3166 36 1 -1.3737 -5.4374 3.7030 37 1 -2.9406 -5.4949 5.5325 38 1 -3.3419 -4.1269 6.4213 39 1 -2.8900 1.1869 4.9821 40 1 -0.8359 -0.5854 4.5484 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704017934.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:03 Heat of formation + Delta-G solvation = 37.507260 kcal Electronic energy + Delta-G solvation = -19391.128646 eV Core-core repulsion = 16591.537595 eV Total energy + Delta-G solvation = -2799.591051 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.96158 -37.62628 -34.69733 -33.42374 -31.51493 -30.00439 -29.35212 -27.29120 -26.82393 -24.85433 -24.27735 -21.23263 -20.96383 -19.61067 -18.53795 -17.01200 -15.96456 -15.40849 -15.32083 -14.97435 -14.66485 -14.32737 -13.79965 -13.33210 -12.81262 -12.64299 -12.37903 -12.35160 -12.18224 -11.95981 -11.81546 -11.66244 -11.30386 -11.28130 -11.06090 -10.97437 -10.77696 -10.35927 -9.96505 -9.81972 -9.58374 -9.38838 -9.23486 -9.02256 -7.68056 -7.17772 -6.57106 -5.47203 -4.03043 2.95165 3.13959 3.17027 3.35233 3.53335 3.71042 4.05508 4.60691 4.75996 4.84208 4.90132 5.06668 5.18109 5.46417 5.48270 5.71033 5.82048 5.88844 5.93367 5.98186 6.03605 6.07436 6.13937 6.29390 6.32549 6.41391 6.43000 6.63654 6.68741 7.16374 7.20450 7.36777 7.54515 7.75543 7.93787 8.06436 8.17573 8.50333 8.81615 8.95787 9.00315 9.04926 9.30132 9.38816 10.40602 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020031 B = 0.005741 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.508027 B = 4876.395014 C = 5782.807546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.140 4.140 3 H 0.099 0.901 4 C -0.169 4.169 5 C -0.137 4.137 6 C -0.110 4.110 7 C 0.180 3.820 8 N -0.756 5.756 9 C 0.179 3.821 10 C -0.256 4.256 11 C -0.153 4.153 12 C 0.083 3.917 13 N -0.889 5.889 14 C 0.094 3.906 15 C -0.463 4.463 16 H 0.070 0.930 17 C 0.076 3.924 18 N -0.800 5.800 19 Si 0.902 3.098 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.269 1.269 23 C -0.202 4.202 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.388 0.612 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.373 0.627 38 H 0.388 0.612 39 H 0.274 0.726 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.848 -0.006 -6.696 9.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.158 4.158 3 H 0.117 0.883 4 C -0.206 4.206 5 C -0.138 4.138 6 C -0.168 4.168 7 C 0.054 3.946 8 N -0.391 5.391 9 C 0.080 3.920 10 C -0.280 4.280 11 C -0.177 4.177 12 C -0.018 4.018 13 N -0.432 5.432 14 C 0.089 3.911 15 C -0.494 4.494 16 H 0.088 0.912 17 C -0.140 4.140 18 N -0.427 5.427 19 Si 0.727 3.273 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.194 1.194 23 C -0.226 4.226 24 H 0.094 0.906 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.111 0.889 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.221 0.779 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.198 0.802 38 H 0.216 0.784 39 H 0.085 0.915 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.922 0.147 -6.954 9.813 hybrid contribution -0.470 0.585 0.785 1.086 sum 6.452 0.732 -6.169 8.957 Atomic orbital electron populations 1.21407 0.92160 1.01183 1.03331 1.22378 0.95784 0.93796 1.03846 0.88328 1.23229 1.02303 1.01936 0.93155 1.21831 0.98159 1.00739 0.93048 1.21290 0.94136 1.01572 0.99757 1.20433 0.92221 0.92774 0.89154 1.44316 1.49176 1.09681 1.35921 1.17523 0.91929 0.90336 0.92188 1.19601 1.09696 0.92529 1.06215 1.19692 1.02129 0.96855 0.99025 1.17855 0.96695 0.92114 0.95138 1.41805 1.52187 1.09150 1.40081 1.16968 0.91994 0.88583 0.93545 1.19102 1.31832 0.93081 1.05401 0.91243 1.25737 0.93987 0.97919 0.96322 1.69872 1.37911 1.09963 1.24986 0.86485 0.79703 0.78365 0.82704 1.19210 1.20641 1.19404 1.20544 1.01840 1.00313 0.99928 0.90573 0.93009 0.92730 0.88855 0.89131 0.92145 0.92128 0.92974 0.93707 0.93465 0.77855 0.89876 0.89914 0.80165 0.78397 0.91483 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.75 9.08 37.16 0.34 -1.41 16 2 C -0.14 -1.77 6.10 -90.62 -0.55 -2.32 16 3 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 4 C -0.17 -1.94 9.47 -26.74 -0.25 -2.20 16 5 C -0.14 -1.81 2.11 -154.51 -0.33 -2.13 16 6 C -0.11 -1.31 9.80 37.16 0.36 -0.95 16 7 C 0.18 2.90 4.10 -4.04 -0.02 2.89 16 8 N -0.76 -14.51 4.57 -58.63 -0.27 -14.78 16 9 C 0.18 4.18 6.64 -83.77 -0.56 3.63 16 10 C -0.26 -5.91 9.31 -39.14 -0.36 -6.28 16 11 C -0.15 -3.56 9.86 -39.46 -0.39 -3.95 16 12 C 0.08 2.03 6.79 -83.23 -0.56 1.47 16 13 N -0.89 -18.50 8.98 32.75 0.29 -18.20 16 14 C 0.09 2.52 5.59 -106.66 -0.60 1.93 16 15 C -0.46 -12.24 8.52 -37.91 -0.32 -12.57 16 16 H 0.07 1.75 6.65 -52.49 -0.35 1.40 16 17 C 0.08 1.93 5.19 -17.33 -0.09 1.84 16 18 N -0.80 -20.94 10.83 55.55 0.60 -20.34 16 19 Si 0.90 19.07 29.59 -169.99 -5.03 14.04 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 C -0.20 -5.26 8.50 -38.75 -0.33 -5.59 16 24 H 0.08 1.26 6.47 -51.93 -0.34 0.93 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.79 7.57 -51.93 -0.39 0.40 16 27 H 0.09 1.07 7.99 -51.93 -0.41 0.66 16 28 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.72 8.07 -51.93 -0.42 0.30 16 31 H 0.05 0.53 7.95 -51.93 -0.41 0.12 16 32 H 0.04 0.76 7.36 -51.93 -0.38 0.37 16 33 H 0.05 0.79 7.85 -51.93 -0.41 0.38 16 34 H 0.39 7.31 7.76 -40.82 -0.32 6.99 16 35 H 0.08 1.76 6.69 -52.49 -0.35 1.41 16 36 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.37 6.59 8.83 -40.82 -0.36 6.23 16 38 H 0.39 7.91 7.03 -40.82 -0.29 7.62 16 39 H 0.27 6.64 8.30 -40.82 -0.34 6.30 16 40 H 0.12 3.24 6.09 -52.49 -0.32 2.92 16 LS Contribution 321.54 15.07 4.85 4.85 Total: -1.00 -27.66 321.54 -9.21 -36.87 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: -6.00 Total: 23.20 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: -3.66 Total: -25.64 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.63 Total: -53.32 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.66 -9.21 -36.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704017934.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.379 kcal (2) G-P(sol) polarization free energy of solvation -27.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds