Wall clock time and date at job start Mon Mar 30 2020 06:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 115.56297 * 2 1 4 4 C 1.52997 * 117.50094 * 214.29664 * 2 1 3 5 5 C 1.52993 * 60.00421 * 252.51758 * 4 2 1 6 6 C 1.53005 * 117.51930 * 252.51664 * 5 4 2 7 7 C 1.52999 * 117.49987 * 107.49205 * 5 4 2 8 8 N 1.46504 * 109.47007 * 225.86022 * 7 5 4 9 9 C 1.39854 * 119.99570 * 180.39928 * 8 7 5 10 10 C 1.39601 * 119.84390 * 359.97438 * 9 8 7 11 11 C 1.38058 * 120.55177 * 179.97438 * 10 9 8 12 12 C 1.38738 * 120.21839 * 359.97438 * 11 10 9 13 13 N 1.38860 * 120.16401 * 179.97438 * 12 11 10 14 14 C 1.41566 * 119.67488 * 359.97438 * 12 11 10 15 15 C 1.41023 * 120.26526 * 180.02562 * 14 12 11 16 16 H 1.08002 * 120.00447 * 24.84982 * 15 14 12 17 17 C 1.39888 * 119.99591 * 204.84849 * 15 14 12 18 18 N 1.30903 * 119.99928 * 15.10841 * 17 15 14 19 19 Si 1.86800 * 119.99787 * 195.10064 * 17 15 14 20 20 H 1.48493 * 109.47090 * 60.00249 * 19 17 15 21 21 H 1.48504 * 109.47004 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47298 * 300.00122 * 19 17 15 23 23 C 1.38011 * 119.83582 * 179.72669 * 9 8 7 24 24 H 1.08997 * 109.47116 * 274.31949 * 1 2 3 25 25 H 1.09003 * 109.46834 * 34.31938 * 1 2 3 26 26 H 1.08997 * 109.46771 * 154.31319 * 1 2 3 27 27 H 1.09003 * 117.49834 * 0.02562 * 4 2 1 28 28 H 1.08999 * 117.49799 * 145.02416 * 4 2 1 29 29 H 1.08998 * 109.46869 * 134.48813 * 6 5 4 30 30 H 1.08998 * 109.47135 * 254.49671 * 6 5 4 31 31 H 1.09001 * 109.46463 * 14.49503 * 6 5 4 32 32 H 1.09007 * 109.47090 * 345.85870 * 7 5 4 33 33 H 1.08993 * 109.47371 * 105.85745 * 7 5 4 34 34 H 0.96997 * 119.99845 * 0.40283 * 8 7 5 35 35 H 1.07999 * 119.72139 * 359.97438 * 10 9 8 36 36 H 1.07997 * 119.89087 * 180.02562 * 11 10 9 37 37 H 0.97003 * 119.99938 * 359.97438 * 13 12 11 38 38 H 0.97001 * 120.00299 * 180.02562 * 13 12 11 39 39 H 0.97005 * 119.99396 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.11082 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2365 -1.1211 -0.7647 5 6 2.2364 -1.1209 0.7652 6 6 3.5486 -0.7757 1.4722 7 6 1.3587 -2.1560 1.4718 8 7 0.6097 -1.5065 2.5504 9 6 -0.2595 -2.2571 3.3485 10 6 -0.4112 -3.6249 3.1142 11 6 -1.2648 -4.3800 3.8934 12 6 -1.9824 -3.7849 4.9210 13 7 -2.8411 -4.5454 5.7037 14 6 -1.8349 -2.3988 5.1676 15 6 -2.5578 -1.7813 6.2091 16 1 -2.8965 -2.3657 7.0518 17 6 -2.8362 -0.4116 6.1508 18 7 -2.6973 0.2370 5.0223 19 14 -3.4063 0.4916 7.6833 20 1 -2.3671 0.3814 8.7383 21 1 -3.6330 1.9229 7.3587 22 1 -4.6727 -0.1114 8.1710 23 6 -0.9592 -1.6429 4.3672 24 1 -0.3633 0.0774 1.0247 25 1 -0.3633 0.8488 -0.5794 26 1 -0.3633 -0.9261 -0.4454 27 1 1.6113 -1.8585 -1.2682 28 1 3.1716 -0.8754 -1.2680 29 1 3.3519 -0.0693 2.2787 30 1 3.9893 -1.6837 1.8839 31 1 4.2394 -0.3282 0.7576 32 1 0.6613 -2.5906 0.7556 33 1 1.9881 -2.9421 1.8888 34 1 0.7166 -0.5558 2.7108 35 1 0.1438 -4.0963 2.3166 36 1 -1.3737 -5.4374 3.7030 37 1 -2.9406 -5.4949 5.5325 38 1 -3.3419 -4.1269 6.4213 39 1 -2.8900 1.1869 4.9821 40 1 -0.8359 -0.5854 4.5484 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704017934.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:03 Heat of formation + Delta-G solvation = 22.401103 kcal Electronic energy + Delta-G solvation = -19391.783698 eV Core-core repulsion = 16591.537595 eV Total energy + Delta-G solvation = -2800.246103 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.21242 -39.30000 -36.33860 -35.31030 -33.15015 -31.27975 -31.08574 -28.91637 -27.85380 -26.70899 -25.84466 -23.01734 -22.03183 -21.40415 -19.75120 -18.87138 -17.67819 -17.20606 -16.64698 -16.39399 -16.33247 -15.78694 -15.13676 -14.70472 -14.26040 -14.18901 -13.93193 -13.73401 -13.58578 -13.42650 -13.12827 -13.06777 -12.96756 -12.80673 -12.68185 -12.30207 -12.09260 -12.01469 -11.65854 -11.40205 -11.18198 -10.91718 -10.76138 -10.40523 -9.35273 -9.11287 -8.46860 -7.25517 -5.98475 1.15065 1.41658 1.50872 1.54579 1.68623 2.28149 2.60353 2.94565 3.25811 3.72064 3.78400 3.81700 3.99525 4.02765 4.10495 4.45685 4.61735 4.66077 4.76567 4.86768 4.90187 4.92959 4.95959 4.98324 5.08828 5.16869 5.24754 5.25418 5.37932 5.38984 5.46266 5.49560 5.70269 5.91719 6.09241 6.20785 6.31550 6.59564 6.99338 7.09490 7.17017 7.31056 7.50519 7.68428 8.52463 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020031 B = 0.005741 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.508027 B = 4876.395014 C = 5782.807546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.144 4.144 3 H 0.113 0.887 4 C -0.147 4.147 5 C -0.148 4.148 6 C -0.107 4.107 7 C 0.180 3.820 8 N -0.748 5.748 9 C 0.177 3.823 10 C -0.262 4.262 11 C -0.158 4.158 12 C 0.067 3.933 13 N -0.880 5.880 14 C 0.060 3.940 15 C -0.492 4.492 16 H 0.073 0.927 17 C 0.033 3.967 18 N -0.831 5.831 19 Si 0.975 3.025 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.261 1.261 23 C -0.226 4.226 24 H 0.044 0.956 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.094 0.906 28 H 0.116 0.884 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.388 0.612 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.390 0.610 38 H 0.389 0.611 39 H 0.278 0.722 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.725 -0.105 -7.442 10.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.162 4.162 3 H 0.131 0.869 4 C -0.184 4.184 5 C -0.148 4.148 6 C -0.164 4.164 7 C 0.056 3.944 8 N -0.382 5.382 9 C 0.076 3.924 10 C -0.286 4.286 11 C -0.182 4.182 12 C -0.035 4.035 13 N -0.424 5.424 14 C 0.055 3.945 15 C -0.523 4.523 16 H 0.091 0.909 17 C -0.180 4.180 18 N -0.459 5.459 19 Si 0.797 3.203 20 H -0.191 1.191 21 H -0.200 1.200 22 H -0.186 1.186 23 C -0.251 4.251 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.112 0.888 28 H 0.134 0.866 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.221 0.779 35 H 0.121 0.879 36 H 0.127 0.873 37 H 0.217 0.783 38 H 0.218 0.782 39 H 0.089 0.911 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.810 0.022 -7.720 10.981 hybrid contribution -0.712 0.556 0.919 1.289 sum 7.097 0.578 -6.800 9.846 Atomic orbital electron populations 1.21333 0.93647 1.01371 1.01433 1.22394 0.94645 0.94739 1.04399 0.86902 1.23313 1.02948 1.00575 0.91575 1.21757 0.98298 1.00471 0.94292 1.21271 0.93780 1.01401 0.99928 1.20521 0.92094 0.93657 0.88139 1.44367 1.48408 1.09521 1.35888 1.17625 0.91929 0.90955 0.91874 1.19889 1.09684 0.92396 1.06591 1.20029 1.01555 0.98214 0.98423 1.18026 0.97589 0.91885 0.96015 1.41673 1.51370 1.09807 1.39507 1.17370 0.92742 0.90046 0.94348 1.19372 1.32869 0.94178 1.05861 0.90870 1.26560 0.93844 0.98348 0.99224 1.69964 1.38697 1.10345 1.26884 0.85372 0.79278 0.77139 0.78520 1.19067 1.19959 1.18565 1.20503 1.03393 0.99578 1.01635 0.93667 0.91662 0.93523 0.88793 0.86594 0.93172 0.92299 0.90662 0.94359 0.93679 0.77869 0.87909 0.87327 0.78262 0.78249 0.91125 0.88218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.35 9.08 71.98 0.65 -2.70 16 2 C -0.14 -3.36 6.10 -10.79 -0.07 -3.43 16 3 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 4 C -0.15 -2.94 9.47 30.59 0.29 -2.65 16 5 C -0.15 -3.63 2.11 -52.18 -0.11 -3.74 16 6 C -0.11 -2.32 9.80 71.98 0.71 -1.61 16 7 C 0.18 5.71 4.10 86.38 0.35 6.06 16 8 N -0.75 -29.15 4.57 -339.42 -1.55 -30.70 16 9 C 0.18 8.43 6.64 38.14 0.25 8.68 16 10 C -0.26 -11.97 9.31 22.56 0.21 -11.76 16 11 C -0.16 -7.26 9.86 22.35 0.22 -7.04 16 12 C 0.07 3.30 6.79 38.97 0.26 3.56 16 13 N -0.88 -36.17 8.98 -50.31 -0.45 -36.62 16 14 C 0.06 3.31 5.59 -21.18 -0.12 3.19 16 15 C -0.49 -26.63 8.52 23.35 0.20 -26.43 16 16 H 0.07 3.75 6.65 -2.91 -0.02 3.73 16 17 C 0.03 1.70 5.19 85.23 0.44 2.14 16 18 N -0.83 -44.84 10.83 21.82 0.24 -44.60 16 19 Si 0.97 39.56 29.59 68.60 2.03 41.59 16 20 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 21 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 22 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 23 C -0.23 -12.25 8.50 22.81 0.19 -12.06 16 24 H 0.04 1.53 6.47 -2.39 -0.02 1.52 16 25 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 26 H 0.05 1.33 7.57 -2.39 -0.02 1.32 16 27 H 0.09 1.90 7.99 -2.39 -0.02 1.88 16 28 H 0.12 1.80 8.09 -2.39 -0.02 1.78 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.29 8.07 -2.39 -0.02 1.27 16 31 H 0.07 1.29 7.95 -2.39 -0.02 1.27 16 32 H 0.04 1.26 7.36 -2.38 -0.02 1.25 16 33 H 0.05 1.46 7.85 -2.39 -0.02 1.44 16 34 H 0.39 15.06 7.76 -92.71 -0.72 14.34 16 35 H 0.10 4.22 6.69 -2.91 -0.02 4.20 16 36 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.39 13.26 8.83 -92.71 -0.82 12.44 16 38 H 0.39 15.83 7.03 -92.71 -0.65 15.18 16 39 H 0.28 13.84 8.30 -92.70 -0.77 13.07 16 40 H 0.10 5.70 6.09 -2.91 -0.02 5.68 16 Total: -1.00 -60.48 321.54 2.63 -57.85 By element: Atomic # 1 Polarization: 61.38 SS G_CDS: -1.12 Total: 60.26 kcal Atomic # 6 Polarization: -51.27 SS G_CDS: 3.49 Total: -47.78 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -1.77 Total: -111.92 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -60.48 2.63 -57.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704017934.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.254 kcal (2) G-P(sol) polarization free energy of solvation -60.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds