Wall clock time and date at job start Mon Mar 30 2020 06:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 115.55814 * 2 1 4 4 C 1.53002 * 117.49629 * 214.31516 * 2 1 3 5 5 C 1.52998 * 117.49728 * 145.69394 * 2 1 3 6 6 C 1.52997 * 117.52012 * 0.02562 * 5 2 1 7 7 C 1.53002 * 117.49422 * 214.97986 * 5 2 1 8 8 N 1.46502 * 109.47009 * 230.79258 * 7 5 2 9 9 C 1.39847 * 120.00155 * 183.61973 * 8 7 5 10 10 C 1.39604 * 119.83801 * 0.02562 * 9 8 7 11 11 C 1.38068 * 120.54827 * 180.02562 * 10 9 8 12 12 C 1.38736 * 120.21866 * 0.02562 * 11 10 9 13 13 N 1.38865 * 120.15893 * 179.97438 * 12 11 10 14 14 C 1.41557 * 119.67406 * 359.97438 * 12 11 10 15 15 C 1.41030 * 120.26547 * 179.97438 * 14 12 11 16 16 H 1.07999 * 120.00252 * 332.22371 * 15 14 12 17 17 C 1.39889 * 119.99929 * 152.21456 * 15 14 12 18 18 N 1.30895 * 119.99859 * 347.97798 * 17 15 14 19 19 Si 1.86800 * 119.99964 * 167.97440 * 17 15 14 20 20 H 1.48496 * 109.47190 * 90.00121 * 19 17 15 21 21 H 1.48502 * 109.47081 * 210.00246 * 19 17 15 22 22 H 1.48502 * 109.47089 * 330.00252 * 19 17 15 23 23 C 1.38007 * 119.84244 * 180.31094 * 9 8 7 24 24 H 1.08997 * 109.47541 * 274.30987 * 1 2 3 25 25 H 1.09003 * 109.47274 * 34.31207 * 1 2 3 26 26 H 1.09003 * 109.47211 * 154.30482 * 1 2 3 27 27 H 1.09001 * 117.49717 * 145.02589 * 4 2 1 28 28 H 1.08996 * 117.50300 * 359.97438 * 4 2 1 29 29 H 1.09002 * 109.47324 * 269.81153 * 6 5 2 30 30 H 1.09007 * 109.47107 * 29.80999 * 6 5 2 31 31 H 1.08997 * 109.47608 * 149.80751 * 6 5 2 32 32 H 1.09002 * 109.46879 * 110.80287 * 7 5 2 33 33 H 1.08999 * 109.47274 * 350.79888 * 7 5 2 34 34 H 0.97005 * 119.99668 * 3.62872 * 8 7 5 35 35 H 1.07993 * 119.72739 * 0.04253 * 10 9 8 36 36 H 1.07998 * 119.88741 * 180.02562 * 11 10 9 37 37 H 0.96996 * 120.00088 * 180.02562 * 13 12 11 38 38 H 0.97001 * 120.00301 * 0.02562 * 13 12 11 39 39 H 0.96998 * 120.00453 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.11363 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2364 -1.1210 -0.7651 5 6 2.2364 -1.1211 0.7649 6 6 1.3592 -2.1569 1.4709 7 6 3.5489 -0.7760 1.4714 8 7 4.5767 -1.7498 1.0951 9 6 5.8471 -1.6855 1.6763 10 6 6.1320 -0.6924 2.6150 11 6 7.3814 -0.6150 3.1976 12 6 8.3696 -1.5263 2.8542 13 7 9.6259 -1.4471 3.4405 14 6 8.0908 -2.5372 1.9033 15 6 9.0862 -3.4697 1.5447 16 1 10.1293 -3.1973 1.6080 17 6 8.7223 -4.7476 1.1070 18 7 7.4890 -5.1619 1.2502 19 14 9.9966 -5.8626 0.3181 20 1 10.6560 -6.6807 1.3674 21 1 9.3317 -6.7579 -0.6626 22 1 11.0151 -5.0357 -0.3777 23 6 6.8148 -2.6006 1.3146 24 1 -0.3634 0.0772 1.0247 25 1 -0.3634 0.8488 -0.5793 26 1 -0.3634 -0.9261 -0.4456 27 1 3.1715 -0.8751 -1.2683 28 1 1.6112 -1.8587 -1.2681 29 1 1.1532 -1.8255 2.4887 30 1 0.4205 -2.2685 0.9282 31 1 1.8788 -3.1146 1.4988 32 1 3.3991 -0.8048 2.5507 33 1 3.8691 0.2230 1.1755 34 1 4.3761 -2.4390 0.4427 35 1 5.3688 0.0212 2.8881 36 1 7.5901 0.1574 3.9229 37 1 10.3152 -2.0852 3.1984 38 1 9.8142 -0.7536 4.0921 39 1 7.2365 -6.0478 0.9464 40 1 6.5921 -3.3650 0.5849 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704017935.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:07 Heat of formation + Delta-G solvation = 35.052541 kcal Electronic energy + Delta-G solvation = -19077.969888 eV Core-core repulsion = 16278.272393 eV Total energy + Delta-G solvation = -2799.697495 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.93503 -37.67444 -34.82739 -33.39912 -31.69756 -29.45102 -29.33210 -27.88283 -26.94617 -24.80893 -24.38028 -21.22910 -20.85400 -19.53809 -18.57941 -17.00080 -16.27874 -15.43203 -15.29953 -14.76711 -14.59625 -14.40788 -14.01199 -13.40069 -13.07173 -12.76679 -12.54728 -12.36117 -12.08719 -12.00929 -11.84700 -11.64559 -11.39990 -11.26900 -11.10781 -10.95339 -10.84658 -10.35010 -9.96236 -9.79267 -9.61375 -9.51414 -9.25180 -9.04298 -7.70454 -7.15071 -6.54440 -5.47798 -4.04443 2.94214 3.15187 3.19388 3.33728 3.51920 3.67983 4.06780 4.52468 4.78273 4.80906 4.87343 5.01586 5.19763 5.27809 5.45911 5.60591 5.69222 5.79704 5.87994 5.90346 5.93116 5.97149 6.10346 6.16233 6.28634 6.29369 6.40616 6.46413 6.67129 7.16504 7.19442 7.36791 7.54123 7.75255 7.92426 8.04919 8.18134 8.50280 8.80704 8.96191 8.99905 9.04592 9.29612 9.38034 10.43841 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022223 B = 0.004980 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.649764 B = 5620.864971 C = 6573.279606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.147 4.147 3 H 0.103 0.897 4 C -0.167 4.167 5 C -0.132 4.132 6 C -0.113 4.113 7 C 0.177 3.823 8 N -0.758 5.758 9 C 0.176 3.824 10 C -0.254 4.254 11 C -0.154 4.154 12 C 0.086 3.914 13 N -0.889 5.889 14 C 0.094 3.906 15 C -0.464 4.464 16 H 0.070 0.930 17 C 0.075 3.925 18 N -0.805 5.805 19 Si 0.902 3.098 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.264 1.264 23 C -0.197 4.197 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.043 0.957 34 H 0.388 0.612 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.388 0.612 38 H 0.374 0.626 39 H 0.274 0.726 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.420 5.340 -1.914 10.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.166 4.166 3 H 0.121 0.879 4 C -0.204 4.204 5 C -0.133 4.133 6 C -0.170 4.170 7 C 0.051 3.949 8 N -0.394 5.394 9 C 0.078 3.922 10 C -0.278 4.278 11 C -0.178 4.178 12 C -0.015 4.015 13 N -0.432 5.432 14 C 0.089 3.911 15 C -0.496 4.496 16 H 0.088 0.912 17 C -0.140 4.140 18 N -0.433 5.433 19 Si 0.728 3.272 20 H -0.199 1.199 21 H -0.204 1.204 22 H -0.189 1.189 23 C -0.221 4.221 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.221 0.779 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.216 0.784 38 H 0.199 0.801 39 H 0.084 0.916 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.724 5.260 -1.903 11.218 hybrid contribution 0.789 -0.824 -0.351 1.194 sum -8.935 4.435 -2.254 10.227 Atomic orbital electron populations 1.21343 0.93118 1.01526 1.01649 1.22449 0.94923 0.94481 1.04727 0.87936 1.23120 1.02493 1.01028 0.93766 1.21813 0.97797 1.00050 0.93627 1.21303 0.98024 0.97911 0.99744 1.20456 0.84674 0.92219 0.97505 1.44303 1.09867 1.35445 1.49737 1.17537 0.84476 0.95675 0.94547 1.19625 0.97129 1.03705 1.07307 1.19704 0.93821 1.00374 1.03942 1.17882 0.86276 0.99436 0.97936 1.41807 1.12646 1.37938 1.50778 1.16970 0.93148 0.90924 0.90080 1.19121 0.93827 0.96384 1.40254 0.91223 1.25731 0.95713 0.98488 0.94075 1.69862 1.18222 1.18347 1.36836 0.86424 0.81370 0.79913 0.79527 1.19898 1.20441 1.18859 1.20540 0.93682 1.01826 1.06058 0.92251 0.92472 0.92635 0.88535 0.89032 0.92314 0.92668 0.91885 0.93089 0.93917 0.77870 0.89794 0.89835 0.78356 0.80144 0.91569 0.86320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 8.93 37.16 0.33 -0.77 16 2 C -0.15 -1.67 6.05 -90.62 -0.55 -2.22 16 3 H 0.10 1.16 8.05 -51.93 -0.42 0.75 16 4 C -0.17 -2.05 9.29 -26.73 -0.25 -2.30 16 5 C -0.13 -1.74 2.19 -154.51 -0.34 -2.08 16 6 C -0.11 -1.38 9.29 37.16 0.35 -1.03 16 7 C 0.18 2.89 4.89 -4.04 -0.02 2.87 16 8 N -0.76 -14.91 5.66 -58.64 -0.33 -15.24 16 9 C 0.18 4.19 6.64 -83.78 -0.56 3.63 16 10 C -0.25 -5.90 9.29 -39.13 -0.36 -6.27 16 11 C -0.15 -3.61 9.86 -39.46 -0.39 -4.00 16 12 C 0.09 2.11 6.79 -83.23 -0.56 1.55 16 13 N -0.89 -18.55 8.98 32.75 0.29 -18.26 16 14 C 0.09 2.53 5.57 -106.66 -0.59 1.94 16 15 C -0.46 -12.37 8.46 -37.91 -0.32 -12.69 16 16 H 0.07 1.77 6.74 -52.49 -0.35 1.41 16 17 C 0.07 1.92 5.23 -17.33 -0.09 1.83 16 18 N -0.81 -21.38 10.86 55.55 0.60 -20.78 16 19 Si 0.90 19.21 29.58 -169.99 -5.03 14.18 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 23 C -0.20 -5.19 8.48 -38.75 -0.33 -5.52 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.49 7.22 -51.93 -0.37 0.12 16 27 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.09 1.03 8.05 -51.93 -0.42 0.61 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.58 6.56 -51.93 -0.34 0.24 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.87 7.70 -51.93 -0.40 0.47 16 33 H 0.04 0.71 7.85 -51.93 -0.41 0.30 16 34 H 0.39 7.43 8.27 -40.82 -0.34 7.09 16 35 H 0.08 1.78 6.69 -52.49 -0.35 1.43 16 36 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.39 7.94 7.08 -40.82 -0.29 7.65 16 38 H 0.37 6.60 8.83 -40.82 -0.36 6.24 16 39 H 0.27 6.70 8.30 -40.82 -0.34 6.36 16 40 H 0.12 3.26 6.21 -52.49 -0.33 2.94 16 LS Contribution 323.65 15.07 4.88 4.88 Total: -1.00 -28.30 323.65 -9.32 -37.62 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: -6.05 Total: 22.65 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -3.69 Total: -25.05 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.57 Total: -54.28 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.30 -9.32 -37.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704017935.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.674 kcal (2) G-P(sol) polarization free energy of solvation -28.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds