Wall clock time and date at job start Mon Mar 30 2020 06:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 115.55814 * 2 1 4 4 C 1.53002 * 117.49629 * 214.31516 * 2 1 3 5 5 C 1.52998 * 117.49728 * 145.69394 * 2 1 3 6 6 C 1.52997 * 117.52012 * 0.02562 * 5 2 1 7 7 C 1.53002 * 117.49422 * 214.97986 * 5 2 1 8 8 N 1.46502 * 109.47009 * 230.79258 * 7 5 2 9 9 C 1.39847 * 120.00155 * 183.61973 * 8 7 5 10 10 C 1.39604 * 119.83801 * 0.02562 * 9 8 7 11 11 C 1.38068 * 120.54827 * 180.02562 * 10 9 8 12 12 C 1.38736 * 120.21866 * 0.02562 * 11 10 9 13 13 N 1.38865 * 120.15893 * 179.97438 * 12 11 10 14 14 C 1.41557 * 119.67406 * 359.97438 * 12 11 10 15 15 C 1.41030 * 120.26547 * 179.97438 * 14 12 11 16 16 H 1.07999 * 120.00252 * 332.22371 * 15 14 12 17 17 C 1.39889 * 119.99929 * 152.21456 * 15 14 12 18 18 N 1.30895 * 119.99859 * 347.97798 * 17 15 14 19 19 Si 1.86800 * 119.99964 * 167.97440 * 17 15 14 20 20 H 1.48496 * 109.47190 * 90.00121 * 19 17 15 21 21 H 1.48502 * 109.47081 * 210.00246 * 19 17 15 22 22 H 1.48502 * 109.47089 * 330.00252 * 19 17 15 23 23 C 1.38007 * 119.84244 * 180.31094 * 9 8 7 24 24 H 1.08997 * 109.47541 * 274.30987 * 1 2 3 25 25 H 1.09003 * 109.47274 * 34.31207 * 1 2 3 26 26 H 1.09003 * 109.47211 * 154.30482 * 1 2 3 27 27 H 1.09001 * 117.49717 * 145.02589 * 4 2 1 28 28 H 1.08996 * 117.50300 * 359.97438 * 4 2 1 29 29 H 1.09002 * 109.47324 * 269.81153 * 6 5 2 30 30 H 1.09007 * 109.47107 * 29.80999 * 6 5 2 31 31 H 1.08997 * 109.47608 * 149.80751 * 6 5 2 32 32 H 1.09002 * 109.46879 * 110.80287 * 7 5 2 33 33 H 1.08999 * 109.47274 * 350.79888 * 7 5 2 34 34 H 0.97005 * 119.99668 * 3.62872 * 8 7 5 35 35 H 1.07993 * 119.72739 * 0.04253 * 10 9 8 36 36 H 1.07998 * 119.88741 * 180.02562 * 11 10 9 37 37 H 0.96996 * 120.00088 * 180.02562 * 13 12 11 38 38 H 0.97001 * 120.00301 * 0.02562 * 13 12 11 39 39 H 0.96998 * 120.00453 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.11363 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2364 -1.1210 -0.7651 5 6 2.2364 -1.1211 0.7649 6 6 1.3592 -2.1569 1.4709 7 6 3.5489 -0.7760 1.4714 8 7 4.5767 -1.7498 1.0951 9 6 5.8471 -1.6855 1.6763 10 6 6.1320 -0.6924 2.6150 11 6 7.3814 -0.6150 3.1976 12 6 8.3696 -1.5263 2.8542 13 7 9.6259 -1.4471 3.4405 14 6 8.0908 -2.5372 1.9033 15 6 9.0862 -3.4697 1.5447 16 1 10.1293 -3.1973 1.6080 17 6 8.7223 -4.7476 1.1070 18 7 7.4890 -5.1619 1.2502 19 14 9.9966 -5.8626 0.3181 20 1 10.6560 -6.6807 1.3674 21 1 9.3317 -6.7579 -0.6626 22 1 11.0151 -5.0357 -0.3777 23 6 6.8148 -2.6006 1.3146 24 1 -0.3634 0.0772 1.0247 25 1 -0.3634 0.8488 -0.5793 26 1 -0.3634 -0.9261 -0.4456 27 1 3.1715 -0.8751 -1.2683 28 1 1.6112 -1.8587 -1.2681 29 1 1.1532 -1.8255 2.4887 30 1 0.4205 -2.2685 0.9282 31 1 1.8788 -3.1146 1.4988 32 1 3.3991 -0.8048 2.5507 33 1 3.8691 0.2230 1.1755 34 1 4.3761 -2.4390 0.4427 35 1 5.3688 0.0212 2.8881 36 1 7.5901 0.1574 3.9229 37 1 10.3152 -2.0852 3.1984 38 1 9.8142 -0.7536 4.0921 39 1 7.2365 -6.0478 0.9464 40 1 6.5921 -3.3650 0.5849 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704017935.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:06 Heat of formation + Delta-G solvation = 19.063844 kcal Electronic energy + Delta-G solvation = -19078.663210 eV Core-core repulsion = 16278.272393 eV Total energy + Delta-G solvation = -2800.390817 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.15928 -39.34564 -36.46837 -35.30275 -33.30955 -31.28885 -30.52653 -28.89076 -28.40769 -26.66792 -25.91629 -23.02191 -22.02814 -21.25266 -19.68480 -18.87224 -17.87392 -17.24180 -16.81150 -16.49267 -16.01133 -15.71808 -15.37540 -14.53382 -14.36139 -14.22064 -14.13709 -13.77171 -13.67605 -13.34777 -13.09916 -12.98669 -12.87288 -12.82692 -12.68547 -12.31218 -12.10189 -12.00960 -11.74261 -11.37480 -11.19121 -10.94997 -10.73101 -10.48950 -9.39499 -9.10231 -8.46025 -7.28133 -6.01604 1.13193 1.41277 1.50237 1.54506 1.65538 2.28194 2.59346 2.94516 3.21044 3.71091 3.78142 3.80508 3.96889 4.00846 4.10341 4.45517 4.60145 4.64724 4.74494 4.84481 4.88603 4.91725 4.98196 5.01154 5.04846 5.16313 5.21885 5.24606 5.35130 5.37509 5.44522 5.50346 5.68407 5.89738 6.07222 6.17728 6.29783 6.57888 6.98542 7.07572 7.14751 7.28222 7.48252 7.67394 8.54136 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022223 B = 0.004980 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.649764 B = 5620.864971 C = 6573.279606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.129 4.129 3 H 0.103 0.897 4 C -0.170 4.170 5 C -0.145 4.145 6 C -0.108 4.108 7 C 0.177 3.823 8 N -0.754 5.754 9 C 0.172 3.828 10 C -0.258 4.258 11 C -0.159 4.159 12 C 0.071 3.929 13 N -0.879 5.879 14 C 0.060 3.940 15 C -0.492 4.492 16 H 0.074 0.926 17 C 0.031 3.969 18 N -0.838 5.838 19 Si 0.976 3.024 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.261 1.261 23 C -0.222 4.222 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.042 0.958 34 H 0.388 0.612 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.390 0.610 38 H 0.390 0.610 39 H 0.278 0.722 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.224 6.008 -1.994 12.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.148 4.148 3 H 0.121 0.879 4 C -0.207 4.207 5 C -0.145 4.145 6 C -0.165 4.165 7 C 0.053 3.947 8 N -0.387 5.387 9 C 0.071 3.929 10 C -0.282 4.282 11 C -0.183 4.183 12 C -0.031 4.031 13 N -0.423 5.423 14 C 0.055 3.945 15 C -0.524 4.524 16 H 0.092 0.908 17 C -0.181 4.181 18 N -0.466 5.466 19 Si 0.798 3.202 20 H -0.191 1.191 21 H -0.199 1.199 22 H -0.185 1.185 23 C -0.246 4.246 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.122 0.878 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.221 0.779 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.218 0.782 38 H 0.218 0.782 39 H 0.088 0.912 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.541 5.958 -1.967 12.267 hybrid contribution 0.973 -0.937 -0.294 1.382 sum -9.569 5.021 -2.261 11.040 Atomic orbital electron populations 1.21373 0.91099 1.02532 1.02444 1.22551 0.96346 0.93728 1.02151 0.87899 1.23135 1.02421 1.02151 0.92978 1.21715 0.96820 1.01977 0.93987 1.21272 0.98480 0.96590 1.00206 1.20556 0.85348 0.91263 0.97553 1.44391 1.09287 1.35947 1.49104 1.17658 0.85536 0.95122 0.94561 1.19926 0.97779 1.03709 1.06778 1.20050 0.93536 1.00583 1.04141 1.18050 0.87864 0.99274 0.97946 1.41677 1.11435 1.38422 1.50741 1.17364 0.93726 0.92185 0.91265 1.19393 0.94050 0.97241 1.41704 0.90840 1.26570 0.97737 0.99697 0.94074 1.69957 1.20094 1.18962 1.37624 0.85300 0.78583 0.77745 0.78548 1.19121 1.19898 1.18482 1.20502 0.94804 1.02553 1.06790 0.91600 0.91065 0.92029 0.90015 0.87751 0.92016 0.90561 0.93695 0.93669 0.94008 0.77880 0.87724 0.87109 0.78193 0.78196 0.91188 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 8.93 71.98 0.64 -1.16 16 2 C -0.13 -2.65 6.05 -10.79 -0.07 -2.71 16 3 H 0.10 2.12 8.05 -2.39 -0.02 2.10 16 4 C -0.17 -3.97 9.29 30.60 0.28 -3.68 16 5 C -0.14 -3.63 2.19 -52.18 -0.11 -3.74 16 6 C -0.11 -2.50 9.29 71.98 0.67 -1.83 16 7 C 0.18 5.70 4.89 86.38 0.42 6.12 16 8 N -0.75 -30.04 5.66 -339.42 -1.92 -31.96 16 9 C 0.17 8.30 6.64 38.14 0.25 8.56 16 10 C -0.26 -11.86 9.29 22.56 0.21 -11.65 16 11 C -0.16 -7.30 9.86 22.35 0.22 -7.08 16 12 C 0.07 3.50 6.79 38.97 0.26 3.76 16 13 N -0.88 -36.11 8.98 -50.31 -0.45 -36.56 16 14 C 0.06 3.30 5.57 -21.18 -0.12 3.19 16 15 C -0.49 -26.83 8.46 23.35 0.20 -26.63 16 16 H 0.07 3.78 6.74 -2.91 -0.02 3.77 16 17 C 0.03 1.62 5.23 85.23 0.45 2.06 16 18 N -0.84 -45.79 10.86 21.82 0.24 -45.55 16 19 Si 0.98 39.83 29.58 68.60 2.03 41.86 16 20 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 21 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 22 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 23 C -0.22 -12.13 8.48 22.81 0.19 -11.94 16 24 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 0.89 7.22 -2.39 -0.02 0.87 16 27 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.10 2.16 8.05 -2.39 -0.02 2.14 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.42 6.56 -2.38 -0.02 1.40 16 31 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 1.51 7.70 -2.39 -0.02 1.49 16 33 H 0.04 1.35 7.85 -2.39 -0.02 1.33 16 34 H 0.39 15.30 8.27 -92.70 -0.77 14.53 16 35 H 0.10 4.30 6.69 -2.91 -0.02 4.28 16 36 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 37 H 0.39 15.83 7.08 -92.71 -0.66 15.18 16 38 H 0.39 13.22 8.83 -92.71 -0.82 12.40 16 39 H 0.28 13.96 8.30 -92.71 -0.77 13.19 16 40 H 0.10 5.66 6.21 -2.91 -0.02 5.64 16 Total: -1.00 -61.57 323.65 2.22 -59.35 By element: Atomic # 1 Polarization: 60.78 SS G_CDS: -1.18 Total: 59.60 kcal Atomic # 6 Polarization: -50.24 SS G_CDS: 3.51 Total: -46.74 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -2.14 Total: -114.07 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -61.57 2.22 -59.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704017935.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.410 kcal (2) G-P(sol) polarization free energy of solvation -61.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds