Wall clock time and date at job start Mon Mar 30 2020 06:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47640 * 2 1 4 4 N 1.46498 * 109.47406 * 239.99310 * 2 1 3 5 5 C 1.39854 * 119.99653 * 85.00238 * 4 2 1 6 6 C 1.39605 * 119.84025 * 359.72365 * 5 4 2 7 7 C 1.38057 * 120.54834 * 179.76128 * 6 5 4 8 8 C 1.38735 * 120.21972 * 0.51666 * 7 6 5 9 9 N 1.38864 * 120.16231 * 179.72002 * 8 7 6 10 10 C 1.41560 * 119.67804 * 359.74448 * 8 7 6 11 11 C 1.41021 * 120.27348 * 179.97438 * 10 8 7 12 12 H 1.08008 * 119.99836 * 25.56855 * 11 10 8 13 13 C 1.39882 * 120.00423 * 205.57074 * 11 10 8 14 14 N 1.30901 * 120.00259 * 15.35257 * 13 11 10 15 15 Si 1.86805 * 120.00050 * 195.35714 * 13 11 10 16 16 H 1.48504 * 109.46908 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47148 * 119.99502 * 15 13 11 18 18 H 1.48502 * 109.47094 * 239.99763 * 15 13 11 19 19 C 1.38004 * 119.83948 * 180.02562 * 5 4 2 20 20 C 1.53005 * 109.46988 * 119.99865 * 2 1 3 21 21 C 1.52996 * 115.55074 * 85.58203 * 20 2 1 22 22 C 1.52998 * 117.49594 * 231.25330 * 20 2 1 23 23 C 1.53004 * 117.49809 * 299.91093 * 20 2 1 24 24 H 1.09006 * 109.46844 * 60.00447 * 1 2 3 25 25 H 1.09007 * 109.47424 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47392 * 300.00358 * 1 2 3 27 27 H 0.97001 * 120.00444 * 265.00495 * 4 2 1 28 28 H 1.08000 * 119.71993 * 0.02562 * 6 5 4 29 29 H 1.07996 * 119.89179 * 180.26182 * 7 6 5 30 30 H 0.96997 * 120.00509 * 180.02562 * 9 8 7 31 31 H 0.97003 * 120.00343 * 0.02781 * 9 8 7 32 32 H 0.96997 * 119.99968 * 180.02562 * 14 13 11 33 33 H 1.07998 * 120.11891 * 359.94584 * 19 5 4 34 34 H 1.08998 * 109.47329 * 60.00134 * 21 20 2 35 35 H 1.08998 * 109.47255 * 300.00129 * 21 20 2 36 36 H 1.08997 * 109.47308 * 180.02562 * 21 20 2 37 37 H 1.09005 * 117.49600 * 214.99569 * 22 20 2 38 38 H 1.08993 * 117.50167 * 0.02562 * 22 20 2 39 39 H 1.08998 * 117.49628 * 359.97438 * 23 20 2 40 40 H 1.08992 * 117.49855 * 144.97451 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1520 0.0069 -2.4008 6 6 1.8135 1.3599 -2.4612 7 6 1.9444 2.0639 -3.6416 8 6 2.4049 1.4291 -4.7859 9 7 2.5306 2.1369 -5.9740 10 6 2.7457 0.0560 -4.7367 11 6 3.2146 -0.6020 -5.8925 12 1 3.7020 -0.0385 -6.6745 13 6 3.0486 -1.9845 -6.0263 14 7 2.2110 -2.6216 -5.2478 15 14 4.0223 -2.9217 -7.3159 16 1 4.8931 -1.9777 -8.0614 17 1 4.8619 -3.9506 -6.6513 18 1 3.0856 -3.5817 -8.2605 19 6 2.6119 -0.6471 -3.5256 20 6 2.0400 -0.7213 1.2493 21 6 2.1597 -2.2419 1.1307 22 6 3.0762 0.0040 2.1101 23 6 1.6374 -0.1482 2.6097 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 2.2490 -1.6319 -1.1525 28 1 1.4503 1.8611 -1.5761 29 1 1.6834 3.1114 -3.6753 30 1 2.8524 1.6907 -6.7728 31 1 2.2964 3.0777 -6.0051 32 1 2.0962 -3.5802 -5.3403 33 1 2.8690 -1.6949 -3.4762 34 1 2.8541 -2.4902 0.3281 35 1 1.1809 -2.6672 0.9089 36 1 2.5289 -2.6517 2.0708 37 1 3.8433 -0.6023 2.5920 38 1 3.3944 0.9950 1.7867 39 1 1.0096 0.7428 2.6146 40 1 1.4574 -0.8546 3.4200 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706575467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:52 Heat of formation + Delta-G solvation = 25.903208 kcal Electronic energy + Delta-G solvation = -19468.151154 eV Core-core repulsion = 16668.056914 eV Total energy + Delta-G solvation = -2800.094240 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.25544 -39.17049 -36.43274 -35.31250 -33.54504 -31.34885 -30.78538 -29.48324 -27.69758 -26.57639 -24.30373 -23.08384 -23.01024 -21.43824 -19.72762 -18.85185 -17.88580 -17.29533 -16.80403 -16.67576 -16.33574 -15.34605 -15.06008 -14.65349 -14.42126 -14.19611 -13.85566 -13.80461 -13.45804 -13.40660 -13.20580 -12.99369 -12.79998 -12.77283 -12.63986 -12.20493 -12.04826 -11.78591 -11.63136 -11.45455 -11.15093 -11.01526 -10.92953 -10.50436 -9.35981 -9.11909 -8.47876 -7.26269 -5.98849 1.13077 1.41312 1.51937 1.54903 1.67571 2.27813 2.78996 2.93039 3.09425 3.73739 3.78930 3.94120 3.99151 4.10277 4.13301 4.45835 4.59317 4.63801 4.78890 4.85750 4.86611 4.88122 4.95374 5.05109 5.08912 5.15791 5.25429 5.29426 5.32801 5.38513 5.45364 5.52089 5.70265 5.92809 6.09247 6.20432 6.32344 6.59554 6.99431 7.09537 7.17350 7.31330 7.50246 7.68502 8.52491 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021724 B = 0.005684 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.586896 B = 4924.969756 C = 5819.766051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.195 3.805 3 H 0.061 0.939 4 N -0.751 5.751 5 C 0.178 3.822 6 C -0.258 4.258 7 C -0.158 4.158 8 C 0.067 3.933 9 N -0.879 5.879 10 C 0.060 3.940 11 C -0.491 4.491 12 H 0.073 0.927 13 C 0.033 3.967 14 N -0.834 5.834 15 Si 0.975 3.025 16 H -0.259 1.259 17 H -0.272 1.272 18 H -0.272 1.272 19 C -0.227 4.227 20 C -0.146 4.146 21 C -0.112 4.112 22 C -0.177 4.177 23 C -0.151 4.151 24 H 0.037 0.963 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.388 0.612 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.389 0.611 31 H 0.390 0.610 32 H 0.278 0.722 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.644 2.057 11.078 11.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.089 3.911 3 H 0.079 0.921 4 N -0.386 5.386 5 C 0.077 3.923 6 C -0.282 4.282 7 C -0.182 4.182 8 C -0.035 4.035 9 N -0.423 5.423 10 C 0.055 3.945 11 C -0.523 4.523 12 H 0.091 0.909 13 C -0.180 4.180 14 N -0.462 5.462 15 Si 0.797 3.203 16 H -0.182 1.182 17 H -0.197 1.197 18 H -0.197 1.197 19 C -0.252 4.252 20 C -0.146 4.146 21 C -0.169 4.169 22 C -0.214 4.214 23 C -0.188 4.188 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.223 0.777 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.217 0.783 31 H 0.217 0.783 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.119 0.881 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.813 1.925 11.297 11.489 hybrid contribution 0.380 -0.705 -1.111 1.370 sum -0.433 1.219 10.186 10.268 Atomic orbital electron populations 1.22187 0.96176 1.01674 1.01434 1.20174 0.93035 0.94959 0.82906 0.92085 1.44599 1.75792 1.11507 1.06654 1.17621 0.97084 0.91493 0.86090 1.19922 1.17275 0.93088 0.97903 1.20047 1.07428 0.98405 0.92344 1.18030 1.05015 0.92606 0.87848 1.41672 1.79404 1.11785 1.09486 1.17366 0.93532 0.90243 0.93366 1.19419 1.35767 0.93181 1.03904 0.90872 1.26561 0.94259 0.98661 0.98498 1.69975 1.28802 1.10271 1.37106 0.85276 0.78709 0.78209 0.78119 1.18218 1.19686 1.19707 1.20487 1.13473 0.99702 0.91523 1.21627 1.05560 0.95570 0.91879 1.21231 1.01640 0.92041 1.02030 1.23155 0.93129 1.01642 1.03444 1.23105 0.97226 1.03164 0.95313 0.94357 0.93104 0.90305 0.77745 0.87641 0.87279 0.78264 0.78253 0.91148 0.88454 0.93416 0.92226 0.90718 0.88066 0.89431 0.88067 0.87152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.55 9.25 71.98 0.67 -3.88 16 2 C 0.19 6.08 2.36 44.99 0.11 6.18 16 3 H 0.06 2.02 6.24 -2.39 -0.01 2.00 16 4 N -0.75 -29.51 5.19 -318.97 -1.66 -31.17 16 5 C 0.18 8.49 6.63 38.14 0.25 8.74 16 6 C -0.26 -11.72 8.83 22.56 0.20 -11.52 16 7 C -0.16 -7.23 9.86 22.35 0.22 -7.01 16 8 C 0.07 3.31 6.79 38.97 0.26 3.57 16 9 N -0.88 -36.21 8.98 -50.31 -0.45 -36.66 16 10 C 0.06 3.32 5.58 -21.18 -0.12 3.20 16 11 C -0.49 -26.74 8.50 23.35 0.20 -26.55 16 12 H 0.07 3.78 6.67 -2.91 -0.02 3.76 16 13 C 0.03 1.69 5.18 85.23 0.44 2.13 16 14 N -0.83 -45.30 10.88 21.82 0.24 -45.07 16 15 Si 0.97 39.76 29.59 68.60 2.03 41.79 16 16 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 17 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 18 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 19 C -0.23 -12.36 8.50 22.81 0.19 -12.17 16 20 C -0.15 -3.60 2.01 -52.18 -0.10 -3.71 16 21 C -0.11 -2.66 8.88 71.98 0.64 -2.02 16 22 C -0.18 -3.86 9.89 30.62 0.30 -3.56 16 23 C -0.15 -2.84 9.45 30.62 0.29 -2.55 16 24 H 0.04 1.29 7.66 -2.38 -0.02 1.27 16 25 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.08 1.82 7.29 -2.39 -0.02 1.80 16 27 H 0.39 15.05 6.32 -92.71 -0.59 14.46 16 28 H 0.11 4.28 6.04 -2.91 -0.02 4.26 16 29 H 0.11 4.32 8.06 -2.91 -0.02 4.30 16 30 H 0.39 15.87 7.04 -92.71 -0.65 15.22 16 31 H 0.39 13.26 8.83 -92.71 -0.82 12.44 16 32 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 33 H 0.10 5.60 6.14 -2.91 -0.02 5.59 16 34 H 0.05 1.28 6.71 -2.39 -0.02 1.26 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.44 8.11 -2.39 -0.02 1.42 16 37 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.09 2.02 8.05 -2.39 -0.02 2.00 16 39 H 0.10 1.77 7.61 -2.39 -0.02 1.75 16 40 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -61.50 319.30 2.72 -58.78 By element: Atomic # 1 Polarization: 62.45 SS G_CDS: -0.99 Total: 61.46 kcal Atomic # 6 Polarization: -52.69 SS G_CDS: 3.55 Total: -49.14 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -1.87 Total: -112.89 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Total: -61.50 2.72 -58.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706575467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.678 kcal (2) G-P(sol) polarization free energy of solvation -61.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds