Wall clock time and date at job start Mon Mar 30 2020 06:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47513 * 2 1 4 4 C 1.39846 * 120.00015 * 90.00034 * 3 2 1 5 5 C 1.39606 * 119.83992 * 354.79125 * 4 3 2 6 6 C 1.38054 * 120.55267 * 179.97438 * 5 4 3 7 7 C 1.38741 * 120.21756 * 0.02562 * 6 5 4 8 8 N 1.38862 * 120.16238 * 179.97438 * 7 6 5 9 9 C 1.41558 * 119.67610 * 0.02562 * 7 6 5 10 10 C 1.41030 * 120.27137 * 180.02562 * 9 7 6 11 11 H 1.07999 * 119.99963 * 26.76868 * 10 9 7 12 12 C 1.39881 * 119.99940 * 206.76712 * 10 9 7 13 13 N 1.30902 * 120.00418 * 16.09024 * 12 10 9 14 14 Si 1.86800 * 119.99854 * 196.08620 * 12 10 9 15 15 H 1.48500 * 109.46809 * 90.00295 * 14 12 10 16 16 H 1.48504 * 109.47363 * 210.00241 * 14 12 10 17 17 H 1.48496 * 109.47302 * 330.00411 * 14 12 10 18 18 C 1.38004 * 119.84166 * 174.51790 * 4 3 2 19 19 C 1.46500 * 119.99846 * 269.99836 * 3 2 1 20 20 C 1.53782 * 113.61424 * 32.06166 * 19 3 2 21 21 C 1.53776 * 87.07983 * 220.01365 * 20 19 3 22 22 C 1.53780 * 113.61622 * 294.56296 * 19 3 2 23 23 H 1.09001 * 109.46698 * 59.99903 * 1 2 3 24 24 H 1.08993 * 109.47095 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46404 * 300.00056 * 1 2 3 26 26 H 1.09007 * 109.46836 * 239.99846 * 2 1 3 27 27 H 1.09004 * 109.47166 * 120.00259 * 2 1 3 28 28 H 1.07997 * 119.72599 * 359.97438 * 5 4 3 29 29 H 1.08000 * 119.89531 * 180.02562 * 6 5 4 30 30 H 0.97006 * 120.00535 * 6.60725 * 8 7 6 31 31 H 0.96997 * 120.00166 * 186.60168 * 8 7 6 32 32 H 0.96996 * 120.00240 * 184.96375 * 13 12 10 33 33 H 1.08005 * 120.11628 * 359.97438 * 18 4 3 34 34 H 1.09001 * 112.84776 * 163.36570 * 19 3 2 35 35 H 1.08999 * 113.61472 * 334.56630 * 20 19 3 36 36 H 1.09004 * 113.61144 * 105.46862 * 20 19 3 37 37 H 1.09000 * 113.62084 * 270.88558 * 21 20 19 38 38 H 1.09002 * 113.60910 * 139.97900 * 21 20 19 39 39 H 1.09001 * 113.61325 * 254.53125 * 22 19 3 40 40 H 1.09005 * 113.61438 * 25.35065 * 22 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2516 2.0404 1.2111 5 6 1.9155 1.4198 2.4157 6 6 2.1397 2.0569 3.6197 7 6 2.7027 3.3247 3.6447 8 7 2.9272 3.9647 4.8565 9 6 3.0461 3.9632 2.4288 10 6 3.6195 5.2516 2.4396 11 1 4.1871 5.5829 3.2966 12 6 3.4530 6.1004 1.3403 13 7 2.5269 5.8458 0.4510 14 14 4.5525 7.5974 1.1414 15 1 5.7575 7.2258 0.3570 16 1 3.8084 8.6669 0.4287 17 1 4.9656 8.0896 2.4801 18 6 2.8179 3.2989 1.2100 19 6 2.2627 2.0717 -1.2688 20 6 1.3154 1.6364 -2.3993 21 6 2.5321 1.7023 -3.3375 22 6 3.4045 1.4566 -2.0951 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.4765 0.4332 2.4056 29 1 1.8761 1.5668 4.5453 30 1 2.7807 3.4905 5.6900 31 1 3.2307 4.8859 4.8695 32 1 2.4581 6.3920 -0.3476 33 1 3.0811 3.7739 0.2764 34 1 2.3400 3.1529 -1.1541 35 1 0.9165 0.6302 -2.2715 36 1 0.5451 2.3721 -2.6310 37 1 2.6824 2.6826 -3.7896 38 1 2.5679 0.8901 -4.0636 39 1 4.3206 2.0470 -2.0812 40 1 3.5776 0.4015 -1.8831 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706896482.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:03 Heat of formation + Delta-G solvation = 47.620390 kcal Electronic energy + Delta-G solvation = -20004.730343 eV Core-core repulsion = 17205.577830 eV Total energy + Delta-G solvation = -2799.152512 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.19294 -37.44096 -34.94448 -33.42188 -32.22993 -29.99554 -29.25203 -26.27298 -25.36440 -25.12169 -23.83804 -21.98060 -20.88965 -19.53094 -18.48659 -17.19006 -16.38030 -15.48915 -15.34913 -14.79065 -14.67519 -14.54726 -13.43041 -13.40927 -12.72845 -12.59669 -12.29894 -12.15865 -11.95314 -11.67651 -11.65692 -11.49985 -11.25053 -11.05453 -10.95581 -10.65848 -10.56148 -10.28330 -10.17427 -9.83827 -9.76268 -9.45396 -9.17167 -9.00041 -7.55258 -7.19437 -6.60208 -5.46653 -4.05059 2.92475 3.15335 3.17717 3.32511 3.48082 4.06114 4.14189 4.81807 5.01970 5.03677 5.27375 5.40499 5.44044 5.47840 5.77458 5.83779 5.92683 5.99348 6.03541 6.09610 6.13635 6.20436 6.31742 6.39145 6.40461 6.50409 6.61440 6.73042 6.84042 7.15838 7.21617 7.34779 7.43103 7.76791 7.92340 7.94630 8.16994 8.49937 8.63821 8.88499 8.95808 9.03745 9.27932 9.36490 10.39995 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016466 B = 0.008210 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.077887 B = 3409.545694 C = 4804.590040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.132 3.868 3 N -0.625 5.625 4 C 0.176 3.824 5 C -0.251 4.251 6 C -0.152 4.152 7 C 0.084 3.916 8 N -0.889 5.889 9 C 0.094 3.906 10 C -0.464 4.464 11 H 0.070 0.930 12 C 0.079 3.921 13 N -0.803 5.803 14 Si 0.897 3.103 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.266 1.266 18 C -0.197 4.197 19 C 0.148 3.852 20 C -0.158 4.158 21 C -0.141 4.141 22 C -0.160 4.160 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.373 0.627 31 H 0.389 0.611 32 H 0.274 0.726 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.899 -6.471 -4.190 7.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.007 3.993 3 N -0.339 5.339 4 C 0.080 3.920 5 C -0.275 4.275 6 C -0.176 4.176 7 C -0.016 4.016 8 N -0.432 5.432 9 C 0.089 3.911 10 C -0.495 4.495 11 H 0.088 0.912 12 C -0.137 4.137 13 N -0.430 5.430 14 Si 0.723 3.277 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.190 1.190 18 C -0.221 4.221 19 C 0.042 3.958 20 C -0.196 4.196 21 C -0.179 4.179 22 C -0.199 4.199 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.198 0.802 31 H 0.217 0.783 32 H 0.085 0.915 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.081 -6.418 -4.538 7.934 hybrid contribution 0.425 0.848 0.116 0.956 sum -0.657 -5.570 -4.422 7.142 Atomic orbital electron populations 1.22374 0.97852 1.00419 1.02644 1.20985 0.93038 0.84475 1.00787 1.46164 1.73545 1.11565 1.02586 1.17543 0.97932 0.92561 0.83993 1.19686 1.16232 1.00514 0.91040 1.19725 1.06842 0.95219 0.95863 1.17877 1.03449 0.93687 0.86636 1.41805 1.81378 1.15877 1.04126 1.17013 0.92416 0.92655 0.89029 1.19137 1.30083 0.97941 1.02372 0.91169 1.25695 0.93702 0.98582 0.95687 1.69876 1.26054 1.38109 1.08969 0.86493 0.80815 0.81189 0.79221 1.19665 1.20668 1.18973 1.20614 1.09733 0.93116 0.98675 1.22287 0.93338 0.98282 0.81904 1.23547 0.97215 1.01881 0.96971 1.22670 0.97463 1.01443 0.96283 1.23505 0.98793 1.01310 0.96316 0.92681 0.93314 0.92117 0.92689 0.91530 0.89474 0.89816 0.80168 0.78344 0.91515 0.86145 0.86632 0.89868 0.91723 0.90381 0.91969 0.91726 0.90631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 9.86 37.16 0.37 -2.21 16 2 C 0.13 2.12 4.91 -4.04 -0.02 2.10 16 3 N -0.62 -12.19 2.82 -163.26 -0.46 -12.65 16 4 C 0.18 4.12 6.54 -83.78 -0.55 3.58 16 5 C -0.25 -5.72 9.11 -39.14 -0.36 -6.07 16 6 C -0.15 -3.51 9.87 -39.46 -0.39 -3.90 16 7 C 0.08 2.06 6.79 -83.23 -0.56 1.49 16 8 N -0.89 -18.39 8.96 32.75 0.29 -18.10 16 9 C 0.09 2.50 5.56 -106.65 -0.59 1.91 16 10 C -0.46 -12.21 8.42 -37.91 -0.32 -12.53 16 11 H 0.07 1.77 6.82 -52.49 -0.36 1.41 16 12 C 0.08 1.99 5.15 -17.33 -0.09 1.90 16 13 N -0.80 -20.83 11.02 55.54 0.61 -20.22 16 14 Si 0.90 19.02 29.59 -169.99 -5.03 13.98 16 15 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 16 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 17 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 18 C -0.20 -5.11 7.85 -38.75 -0.30 -5.41 16 19 C 0.15 2.67 3.95 -67.12 -0.26 2.40 16 20 C -0.16 -2.33 6.67 -25.92 -0.17 -2.50 16 21 C -0.14 -1.88 8.08 -25.92 -0.21 -2.09 16 22 C -0.16 -2.49 7.64 -25.92 -0.20 -2.69 16 23 H 0.05 0.81 6.14 -51.93 -0.32 0.49 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 1.02 8.03 -51.93 -0.42 0.61 16 26 H 0.05 0.79 6.39 -51.92 -0.33 0.45 16 27 H 0.07 1.09 6.41 -51.93 -0.33 0.76 16 28 H 0.09 1.80 6.17 -52.49 -0.32 1.47 16 29 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 30 H 0.37 6.54 8.84 -40.82 -0.36 6.18 16 31 H 0.39 7.92 7.14 -40.82 -0.29 7.63 16 32 H 0.27 6.56 8.30 -40.82 -0.34 6.22 16 33 H 0.12 3.19 4.25 -52.48 -0.22 2.97 16 34 H 0.12 2.43 6.01 -51.93 -0.31 2.12 16 35 H 0.08 1.15 5.17 -51.93 -0.27 0.89 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.08 1.14 7.31 -51.93 -0.38 0.76 16 LS Contribution 309.85 15.07 4.67 4.67 Total: -1.00 -27.67 309.85 -9.17 -36.83 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: -5.59 Total: 19.50 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -3.66 Total: -24.02 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.45 Total: -50.96 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.67 -9.17 -36.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706896482.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.452 kcal (2) G-P(sol) polarization free energy of solvation -27.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds