Wall clock time and date at job start Mon Mar 30 2020 06:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47513 * 2 1 4 4 C 1.39846 * 120.00015 * 90.00034 * 3 2 1 5 5 C 1.39606 * 119.83992 * 354.79125 * 4 3 2 6 6 C 1.38054 * 120.55267 * 179.97438 * 5 4 3 7 7 C 1.38741 * 120.21756 * 0.02562 * 6 5 4 8 8 N 1.38862 * 120.16238 * 179.97438 * 7 6 5 9 9 C 1.41558 * 119.67610 * 0.02562 * 7 6 5 10 10 C 1.41030 * 120.27137 * 180.02562 * 9 7 6 11 11 H 1.07999 * 119.99963 * 26.76868 * 10 9 7 12 12 C 1.39881 * 119.99940 * 206.76712 * 10 9 7 13 13 N 1.30902 * 120.00418 * 16.09024 * 12 10 9 14 14 Si 1.86800 * 119.99854 * 196.08620 * 12 10 9 15 15 H 1.48500 * 109.46809 * 90.00295 * 14 12 10 16 16 H 1.48504 * 109.47363 * 210.00241 * 14 12 10 17 17 H 1.48496 * 109.47302 * 330.00411 * 14 12 10 18 18 C 1.38004 * 119.84166 * 174.51790 * 4 3 2 19 19 C 1.46500 * 119.99846 * 269.99836 * 3 2 1 20 20 C 1.53782 * 113.61424 * 32.06166 * 19 3 2 21 21 C 1.53776 * 87.07983 * 220.01365 * 20 19 3 22 22 C 1.53780 * 113.61622 * 294.56296 * 19 3 2 23 23 H 1.09001 * 109.46698 * 59.99903 * 1 2 3 24 24 H 1.08993 * 109.47095 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46404 * 300.00056 * 1 2 3 26 26 H 1.09007 * 109.46836 * 239.99846 * 2 1 3 27 27 H 1.09004 * 109.47166 * 120.00259 * 2 1 3 28 28 H 1.07997 * 119.72599 * 359.97438 * 5 4 3 29 29 H 1.08000 * 119.89531 * 180.02562 * 6 5 4 30 30 H 0.97006 * 120.00535 * 6.60725 * 8 7 6 31 31 H 0.96997 * 120.00166 * 186.60168 * 8 7 6 32 32 H 0.96996 * 120.00240 * 184.96375 * 13 12 10 33 33 H 1.08005 * 120.11628 * 359.97438 * 18 4 3 34 34 H 1.09001 * 112.84776 * 163.36570 * 19 3 2 35 35 H 1.08999 * 113.61472 * 334.56630 * 20 19 3 36 36 H 1.09004 * 113.61144 * 105.46862 * 20 19 3 37 37 H 1.09000 * 113.62084 * 270.88558 * 21 20 19 38 38 H 1.09002 * 113.60910 * 139.97900 * 21 20 19 39 39 H 1.09001 * 113.61325 * 254.53125 * 22 19 3 40 40 H 1.09005 * 113.61438 * 25.35065 * 22 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2516 2.0404 1.2111 5 6 1.9155 1.4198 2.4157 6 6 2.1397 2.0569 3.6197 7 6 2.7027 3.3247 3.6447 8 7 2.9272 3.9647 4.8565 9 6 3.0461 3.9632 2.4288 10 6 3.6195 5.2516 2.4396 11 1 4.1871 5.5829 3.2966 12 6 3.4530 6.1004 1.3403 13 7 2.5269 5.8458 0.4510 14 14 4.5525 7.5974 1.1414 15 1 5.7575 7.2258 0.3570 16 1 3.8084 8.6669 0.4287 17 1 4.9656 8.0896 2.4801 18 6 2.8179 3.2989 1.2100 19 6 2.2627 2.0717 -1.2688 20 6 1.3154 1.6364 -2.3993 21 6 2.5321 1.7023 -3.3375 22 6 3.4045 1.4566 -2.0951 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.4765 0.4332 2.4056 29 1 1.8761 1.5668 4.5453 30 1 2.7807 3.4905 5.6900 31 1 3.2307 4.8859 4.8695 32 1 2.4581 6.3920 -0.3476 33 1 3.0811 3.7739 0.2764 34 1 2.3400 3.1529 -1.1541 35 1 0.9165 0.6302 -2.2715 36 1 0.5451 2.3721 -2.6310 37 1 2.6824 2.6826 -3.7896 38 1 2.5679 0.8901 -4.0636 39 1 4.3206 2.0470 -2.0812 40 1 3.5776 0.4015 -1.8831 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706896482.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:02 Heat of formation + Delta-G solvation = 32.739765 kcal Electronic energy + Delta-G solvation = -20005.375615 eV Core-core repulsion = 17205.577830 eV Total energy + Delta-G solvation = -2799.797785 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.63600 -39.11928 -36.45833 -35.29125 -33.81469 -31.56651 -31.02985 -27.94731 -27.04343 -26.42379 -25.30397 -23.40452 -22.67202 -21.15812 -19.86417 -18.95776 -18.04836 -17.19797 -16.95352 -16.50835 -16.13655 -15.99751 -14.97248 -14.74875 -14.36262 -14.16711 -13.94359 -13.75008 -13.40506 -13.20393 -13.12398 -12.88484 -12.82354 -12.78206 -12.52603 -12.08759 -11.92321 -11.89161 -11.60575 -11.42242 -11.14763 -11.04082 -10.92875 -10.87153 -9.20392 -9.07039 -8.48551 -7.19800 -5.99022 1.13165 1.40287 1.50888 1.52158 1.65957 2.27860 2.68122 2.93353 3.77333 3.78568 3.82653 3.98210 4.04240 4.15733 4.21781 4.55616 4.61810 4.66738 4.78852 4.82060 4.85546 4.89933 4.97339 5.04717 5.09914 5.13863 5.22699 5.28642 5.40914 5.45403 5.51115 5.56718 5.68772 5.94831 6.10368 6.17146 6.34962 6.60855 6.94476 7.07949 7.13154 7.23173 7.49552 7.68182 8.52911 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016466 B = 0.008210 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.077887 B = 3409.545694 C = 4804.590040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.127 3.873 3 N -0.627 5.627 4 C 0.171 3.829 5 C -0.254 4.254 6 C -0.158 4.158 7 C 0.067 3.933 8 N -0.880 5.880 9 C 0.057 3.943 10 C -0.492 4.492 11 H 0.071 0.929 12 C 0.036 3.964 13 N -0.833 5.833 14 Si 0.968 3.032 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.259 1.259 18 C -0.221 4.221 19 C 0.127 3.873 20 C -0.145 4.145 21 C -0.124 4.124 22 C -0.155 4.155 23 H 0.055 0.945 24 H 0.080 0.920 25 H 0.034 0.966 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.390 0.610 31 H 0.389 0.611 32 H 0.278 0.722 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.115 -7.944 -4.982 9.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.004 3.996 3 N -0.340 5.340 4 C 0.072 3.928 5 C -0.277 4.277 6 C -0.183 4.183 7 C -0.035 4.035 8 N -0.424 5.424 9 C 0.052 3.948 10 C -0.524 4.524 11 H 0.089 0.911 12 C -0.176 4.176 13 N -0.461 5.461 14 Si 0.790 3.210 15 H -0.194 1.194 16 H -0.201 1.201 17 H -0.183 1.183 18 C -0.246 4.246 19 C 0.022 3.978 20 C -0.184 4.184 21 C -0.162 4.162 22 C -0.194 4.194 23 H 0.074 0.926 24 H 0.099 0.901 25 H 0.054 0.946 26 H 0.099 0.901 27 H 0.082 0.918 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.217 0.783 31 H 0.217 0.783 32 H 0.088 0.912 33 H 0.122 0.878 34 H 0.093 0.907 35 H 0.118 0.882 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.307 -7.918 -5.328 9.633 hybrid contribution 0.441 1.200 0.377 1.333 sum -0.866 -6.719 -4.951 8.391 Atomic orbital electron populations 1.22289 0.96648 1.02127 1.01424 1.21225 0.93927 0.82533 1.01952 1.46362 1.73234 1.12735 1.01710 1.17698 0.96997 0.92099 0.85988 1.20003 1.15592 1.01359 0.90755 1.20075 1.06129 0.94884 0.97165 1.18060 1.03839 0.94441 0.87170 1.41672 1.80969 1.15890 1.03839 1.17418 0.93606 0.93462 0.90299 1.19357 1.31155 0.98568 1.03285 0.91117 1.26478 0.94711 1.01279 0.95125 1.69958 1.27284 1.39416 1.09486 0.85417 0.78717 0.77546 0.79278 1.19449 1.20068 1.18295 1.20634 1.11402 0.94487 0.98048 1.22382 0.96539 0.96427 0.82500 1.23490 0.97141 1.02454 0.95266 1.22613 0.95166 1.02646 0.95727 1.23464 0.97655 1.01350 0.96933 0.92574 0.90095 0.94648 0.90073 0.91751 0.87199 0.87248 0.78279 0.78317 0.91181 0.87821 0.90750 0.88158 0.92099 0.90305 0.88998 0.93126 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.51 9.86 71.98 0.71 -3.80 16 2 C 0.13 3.79 4.91 86.38 0.42 4.22 16 3 N -0.63 -24.30 2.82 -670.45 -1.89 -26.19 16 4 C 0.17 8.14 6.54 38.14 0.25 8.39 16 5 C -0.25 -11.42 9.11 22.56 0.21 -11.22 16 6 C -0.16 -7.23 9.87 22.35 0.22 -7.01 16 7 C 0.07 3.30 6.79 38.97 0.26 3.57 16 8 N -0.88 -36.41 8.96 -50.31 -0.45 -36.86 16 9 C 0.06 3.16 5.56 -21.18 -0.12 3.05 16 10 C -0.49 -26.85 8.42 23.35 0.20 -26.65 16 11 H 0.07 3.69 6.82 -2.91 -0.02 3.67 16 12 C 0.04 1.90 5.15 85.23 0.44 2.33 16 13 N -0.83 -45.14 11.02 21.82 0.24 -44.90 16 14 Si 0.97 39.97 29.59 68.60 2.03 42.00 16 15 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 16 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 17 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 18 C -0.22 -11.98 7.85 22.81 0.18 -11.80 16 19 C 0.13 4.61 3.95 45.52 0.18 4.79 16 20 C -0.15 -4.03 6.67 31.12 0.21 -3.83 16 21 C -0.12 -3.01 8.08 31.12 0.25 -2.76 16 22 C -0.15 -4.66 7.64 31.12 0.24 -4.43 16 23 H 0.06 1.50 6.14 -2.39 -0.01 1.49 16 24 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.03 1.13 8.03 -2.39 -0.02 1.11 16 26 H 0.08 2.02 6.39 -2.38 -0.02 2.01 16 27 H 0.06 1.96 6.41 -2.38 -0.02 1.95 16 28 H 0.11 4.36 6.17 -2.91 -0.02 4.34 16 29 H 0.11 4.32 8.06 -2.91 -0.02 4.30 16 30 H 0.39 13.31 8.84 -92.70 -0.82 12.49 16 31 H 0.39 16.04 7.14 -92.71 -0.66 15.38 16 32 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 33 H 0.10 5.87 4.25 -2.91 -0.01 5.85 16 34 H 0.07 3.34 6.01 -2.39 -0.01 3.32 16 35 H 0.10 2.45 5.17 -2.39 -0.01 2.43 16 36 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.09 2.42 7.31 -2.38 -0.02 2.40 16 Total: -1.00 -61.96 309.85 3.17 -58.79 By element: Atomic # 1 Polarization: 52.72 SS G_CDS: -0.41 Total: 52.31 kcal Atomic # 6 Polarization: -48.80 SS G_CDS: 3.65 Total: -45.15 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -2.10 Total: -107.94 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -61.96 3.17 -58.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706896482.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.529 kcal (2) G-P(sol) polarization free energy of solvation -61.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds