Wall clock time and date at job start Mon Mar 30 2020 06:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46854 * 2 1 4 4 C 1.50697 * 109.47400 * 240.00087 * 2 1 3 5 5 H 1.07998 * 120.00244 * 240.00178 * 4 2 1 6 6 C 1.37881 * 119.99687 * 59.99766 * 4 2 1 7 7 N 1.31506 * 120.00452 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99577 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47493 * 59.99696 * 8 6 4 10 10 H 1.48501 * 109.46976 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47261 * 299.99764 * 8 6 4 12 12 N 1.46902 * 109.47545 * 119.99636 * 2 1 3 13 13 C 1.46897 * 111.00373 * 176.04740 * 12 2 1 14 14 C 1.39170 * 110.99781 * 300.00805 * 12 2 1 15 15 C 1.39283 * 120.64576 * 300.01368 * 14 12 2 16 16 C 1.37888 * 118.73904 * 179.97438 * 15 14 12 17 17 N 1.31658 * 120.69909 * 0.13046 * 16 15 14 18 18 C 1.32824 * 122.59981 * 359.97438 * 17 16 15 19 19 C 1.37322 * 120.13133 * 359.77335 * 18 17 16 20 20 C 1.50482 * 122.90029 * 180.68771 * 19 18 17 21 21 C 1.52777 * 110.55955 * 342.36389 * 20 19 18 22 22 C 1.53241 * 108.32145 * 50.82720 * 21 20 19 23 23 C 1.50733 * 117.52437 * 179.69633 * 18 17 16 24 24 H 1.09004 * 109.46854 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47173 * 299.99936 * 1 2 3 26 26 H 1.08997 * 109.47430 * 60.00236 * 1 2 3 27 27 H 0.97002 * 120.00453 * 180.02562 * 7 6 4 28 28 H 1.08992 * 109.47119 * 183.95707 * 13 12 2 29 29 H 1.09004 * 109.46908 * 303.95572 * 13 12 2 30 30 H 1.08998 * 109.46949 * 63.95633 * 13 12 2 31 31 H 1.08002 * 120.62768 * 359.97438 * 15 14 12 32 32 H 1.07997 * 119.64968 * 180.13943 * 16 15 14 33 33 H 1.09002 * 109.26291 * 102.64074 * 20 19 18 34 34 H 1.08999 * 109.26060 * 222.11942 * 20 19 18 35 35 H 1.09003 * 109.69247 * 170.54895 * 21 20 19 36 36 H 1.09003 * 109.68772 * 291.12521 * 21 20 19 37 37 H 1.09001 * 109.59345 * 170.54749 * 22 21 20 38 38 H 1.08996 * 109.64497 * 49.94729 * 22 21 20 39 39 H 1.09002 * 109.25329 * 282.42976 * 23 18 17 40 40 H 1.08995 * 109.25195 * 41.89283 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 1.8260 -2.5202 -4.0077 10 1 1.8260 -0.4205 -5.2204 11 1 3.8064 -1.1207 -4.0081 12 7 2.0198 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1871 14 6 1.5734 -0.0614 2.3568 15 6 1.9050 1.2667 2.6142 16 6 1.4411 1.8532 3.7727 17 7 0.7009 1.1714 4.6216 18 6 0.3625 -0.0967 4.4178 19 6 0.7820 -0.7485 3.2842 20 6 0.4229 -2.1785 2.9833 21 6 -0.0556 -2.8891 4.2483 22 6 -1.1400 -2.0274 4.9039 23 6 -0.4834 -0.7695 5.4685 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.7089 1.1614 -3.4844 28 1 3.8164 -1.3720 2.0500 29 1 3.8070 -1.2914 0.2719 30 1 3.9192 0.2045 1.2301 31 1 2.5138 1.8264 1.9197 32 1 1.6875 2.8829 3.9860 33 1 -0.3709 -2.2005 2.2366 34 1 1.2994 -2.6945 2.5915 35 1 -0.4681 -3.8640 3.9883 36 1 0.7798 -3.0150 4.9371 37 1 -1.6136 -2.5870 5.7106 38 1 -1.8863 -1.7488 4.1599 39 1 0.1456 -1.0418 6.3160 40 1 -1.2576 -0.0790 5.8028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709076633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:17 Heat of formation + Delta-G solvation = 28.299700 kcal Electronic energy + Delta-G solvation = -20207.086262 eV Core-core repulsion = 17407.095941 eV Total energy + Delta-G solvation = -2799.990320 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.45256 -37.30307 -36.12421 -33.20831 -31.39493 -30.16874 -29.39412 -28.86255 -25.65766 -24.47677 -23.55259 -22.95441 -21.67539 -19.92162 -19.06839 -16.81992 -16.04198 -15.82084 -15.40577 -15.05191 -14.10300 -13.97805 -13.76105 -13.68822 -13.35995 -13.03457 -12.88262 -12.46994 -12.35362 -11.95131 -11.82291 -11.46872 -11.10694 -10.96857 -10.78568 -10.71620 -10.60530 -10.34904 -10.27765 -10.19830 -10.10435 -9.09090 -9.01922 -8.66700 -8.50443 -8.30005 -7.49236 -6.09612 -4.15473 1.57143 1.72253 3.26935 3.32022 3.34177 4.15545 4.32308 4.52348 4.66650 5.02538 5.06228 5.15955 5.22549 5.29714 5.42047 5.57501 5.70188 5.79239 5.82203 5.92301 5.98104 6.07139 6.11782 6.18119 6.20600 6.28678 6.30394 6.51587 6.62125 6.67928 6.77172 6.90644 6.94636 7.00072 7.16597 7.37225 7.68360 7.74673 7.99104 8.20436 8.41038 8.51936 8.89017 9.49738 10.97115 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.027487 B = 0.006038 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.433139 B = 4636.171876 C = 4997.264845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.220 3.780 3 H 0.005 0.995 4 C -0.509 4.509 5 H 0.065 0.935 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.510 5.510 13 C 0.042 3.958 14 C 0.166 3.834 15 C -0.211 4.211 16 C 0.102 3.898 17 N -0.506 5.506 18 C 0.124 3.876 19 C -0.111 4.111 20 C -0.062 4.062 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.061 4.061 24 H 0.035 0.965 25 H 0.004 0.996 26 H 0.087 0.913 27 H 0.262 0.738 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.018 0.982 31 H 0.129 0.871 32 H 0.147 0.853 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.722 -3.602 12.254 12.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.116 3.884 3 H 0.022 0.978 4 C -0.548 4.548 5 H 0.083 0.917 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.232 5.232 13 C -0.104 4.104 14 C 0.063 3.937 15 C -0.233 4.233 16 C -0.057 4.057 17 N -0.216 5.216 18 C -0.012 4.012 19 C -0.114 4.114 20 C -0.100 4.100 21 C -0.159 4.159 22 C -0.157 4.157 23 C -0.099 4.099 24 H 0.054 0.946 25 H 0.023 0.977 26 H 0.106 0.894 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.105 0.895 30 H 0.037 0.963 31 H 0.147 0.853 32 H 0.164 0.836 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.278 -3.556 12.814 13.360 hybrid contribution 0.991 0.277 -1.820 2.091 sum -0.287 -3.279 10.994 11.476 Atomic orbital electron populations 1.21789 0.97445 0.99655 0.99946 1.19353 0.92499 0.91978 0.84540 0.97768 1.21064 1.31601 1.12574 0.89528 0.91678 1.24924 0.95054 0.95021 0.99055 1.69879 1.36506 1.22851 1.23745 0.86547 0.79080 0.79762 0.81950 1.20143 1.21303 1.20270 1.59795 1.10140 1.52364 1.00873 1.22248 0.86579 0.99487 1.02119 1.19381 0.92342 0.90329 0.91636 1.22736 1.03859 0.97179 0.99512 1.22305 0.93851 0.99182 0.90328 1.67474 1.13698 1.08082 1.32335 1.20822 0.96433 0.89913 0.93991 1.20378 0.98930 0.97832 0.94284 1.20185 1.02285 0.90636 0.96859 1.21614 0.98359 0.98452 0.97487 1.21558 0.98187 0.95665 1.00326 1.20257 0.97835 0.96205 0.95594 0.94623 0.97705 0.89446 0.92761 0.93614 0.89528 0.96332 0.85327 0.83590 0.90438 0.89820 0.91539 0.92051 0.91457 0.91479 0.90536 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.84 37.16 0.33 -2.88 16 2 C 0.22 5.42 1.84 -68.87 -0.13 5.30 16 3 H 0.00 0.13 7.18 -51.93 -0.37 -0.25 16 4 C -0.51 -13.42 7.88 -34.44 -0.27 -13.70 16 5 H 0.07 1.69 6.41 -52.49 -0.34 1.35 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -24.91 11.32 55.43 0.63 -24.28 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.51 -10.75 3.66 -172.39 -0.63 -11.38 16 13 C 0.04 0.81 9.11 60.06 0.55 1.36 16 14 C 0.17 3.25 3.29 -83.50 -0.27 2.98 16 15 C -0.21 -3.92 8.66 -39.32 -0.34 -4.26 16 16 C 0.10 1.73 11.18 -17.75 -0.20 1.53 16 17 N -0.51 -8.84 10.18 -9.61 -0.10 -8.94 16 18 C 0.12 2.06 6.62 -82.48 -0.55 1.51 16 19 C -0.11 -1.97 5.75 -104.42 -0.60 -2.57 16 20 C -0.06 -0.97 5.28 -28.10 -0.15 -1.12 16 21 C -0.12 -1.47 5.99 -26.72 -0.16 -1.63 16 22 C -0.12 -1.36 5.96 -26.75 -0.16 -1.52 16 23 C -0.06 -0.79 5.92 -28.01 -0.17 -0.95 16 24 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.00 0.09 7.22 -51.93 -0.37 -0.28 16 26 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.72 6.10 -51.93 -0.32 1.41 16 30 H 0.02 0.35 7.40 -51.93 -0.38 -0.04 16 31 H 0.13 2.39 7.16 -52.49 -0.38 2.01 16 32 H 0.15 2.02 8.06 -52.49 -0.42 1.59 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.08 1.38 7.76 -51.93 -0.40 0.98 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 312.50 15.07 4.71 4.71 Total: -1.00 -28.41 312.50 -8.86 -37.27 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.24 Total: 1.29 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -2.21 Total: -14.40 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.10 Total: -44.60 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.41 -8.86 -37.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709076633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.567 kcal (2) G-P(sol) polarization free energy of solvation -28.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds