Wall clock time and date at job start Mon Mar 30 2020 06:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46854 * 2 1 4 4 C 1.50697 * 109.47400 * 240.00087 * 2 1 3 5 5 H 1.07998 * 120.00244 * 240.00178 * 4 2 1 6 6 C 1.37881 * 119.99687 * 59.99766 * 4 2 1 7 7 N 1.31506 * 120.00452 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99577 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47493 * 59.99696 * 8 6 4 10 10 H 1.48501 * 109.46976 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47261 * 299.99764 * 8 6 4 12 12 N 1.46902 * 109.47545 * 119.99636 * 2 1 3 13 13 C 1.46897 * 111.00373 * 176.04740 * 12 2 1 14 14 C 1.39170 * 110.99781 * 300.00805 * 12 2 1 15 15 C 1.39283 * 120.64576 * 300.01368 * 14 12 2 16 16 C 1.37888 * 118.73904 * 179.97438 * 15 14 12 17 17 N 1.31658 * 120.69909 * 0.13046 * 16 15 14 18 18 C 1.32824 * 122.59981 * 359.97438 * 17 16 15 19 19 C 1.37322 * 120.13133 * 359.77335 * 18 17 16 20 20 C 1.50482 * 122.90029 * 180.68771 * 19 18 17 21 21 C 1.52777 * 110.55955 * 342.36389 * 20 19 18 22 22 C 1.53241 * 108.32145 * 50.82720 * 21 20 19 23 23 C 1.50733 * 117.52437 * 179.69633 * 18 17 16 24 24 H 1.09004 * 109.46854 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47173 * 299.99936 * 1 2 3 26 26 H 1.08997 * 109.47430 * 60.00236 * 1 2 3 27 27 H 0.97002 * 120.00453 * 180.02562 * 7 6 4 28 28 H 1.08992 * 109.47119 * 183.95707 * 13 12 2 29 29 H 1.09004 * 109.46908 * 303.95572 * 13 12 2 30 30 H 1.08998 * 109.46949 * 63.95633 * 13 12 2 31 31 H 1.08002 * 120.62768 * 359.97438 * 15 14 12 32 32 H 1.07997 * 119.64968 * 180.13943 * 16 15 14 33 33 H 1.09002 * 109.26291 * 102.64074 * 20 19 18 34 34 H 1.08999 * 109.26060 * 222.11942 * 20 19 18 35 35 H 1.09003 * 109.69247 * 170.54895 * 21 20 19 36 36 H 1.09003 * 109.68772 * 291.12521 * 21 20 19 37 37 H 1.09001 * 109.59345 * 170.54749 * 22 21 20 38 38 H 1.08996 * 109.64497 * 49.94729 * 22 21 20 39 39 H 1.09002 * 109.25329 * 282.42976 * 23 18 17 40 40 H 1.08995 * 109.25195 * 41.89283 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 1.8260 -2.5202 -4.0077 10 1 1.8260 -0.4205 -5.2204 11 1 3.8064 -1.1207 -4.0081 12 7 2.0198 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1871 14 6 1.5734 -0.0614 2.3568 15 6 1.9050 1.2667 2.6142 16 6 1.4411 1.8532 3.7727 17 7 0.7009 1.1714 4.6216 18 6 0.3625 -0.0967 4.4178 19 6 0.7820 -0.7485 3.2842 20 6 0.4229 -2.1785 2.9833 21 6 -0.0556 -2.8891 4.2483 22 6 -1.1400 -2.0274 4.9039 23 6 -0.4834 -0.7695 5.4685 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.7089 1.1614 -3.4844 28 1 3.8164 -1.3720 2.0500 29 1 3.8070 -1.2914 0.2719 30 1 3.9192 0.2045 1.2301 31 1 2.5138 1.8264 1.9197 32 1 1.6875 2.8829 3.9860 33 1 -0.3709 -2.2005 2.2366 34 1 1.2994 -2.6945 2.5915 35 1 -0.4681 -3.8640 3.9883 36 1 0.7798 -3.0150 4.9371 37 1 -1.6136 -2.5870 5.7106 38 1 -1.8863 -1.7488 4.1599 39 1 0.1456 -1.0418 6.3160 40 1 -1.2576 -0.0790 5.8028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709076633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:16 Heat of formation + Delta-G solvation = 13.108299 kcal Electronic energy + Delta-G solvation = -20207.745010 eV Core-core repulsion = 17407.095941 eV Total energy + Delta-G solvation = -2800.649069 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.83137 -38.87008 -37.31613 -35.12192 -32.84931 -31.40212 -31.22630 -30.20972 -27.54004 -26.19319 -24.80256 -24.22085 -23.28256 -21.35597 -20.40120 -18.60246 -17.54607 -17.45851 -16.93147 -16.51697 -15.78646 -15.33805 -15.12787 -15.01340 -14.69838 -14.57616 -14.19176 -14.07304 -13.66303 -13.57171 -13.16484 -13.01030 -12.79195 -12.67399 -12.63286 -12.22899 -12.09785 -12.07584 -11.67448 -11.61869 -11.40240 -11.05426 -10.59710 -10.37152 -10.12732 -9.63228 -9.21965 -8.15357 -6.28151 0.19966 0.28720 1.42937 1.44529 1.52011 2.39729 2.79396 3.06608 3.16601 3.35557 3.85822 3.95376 4.09644 4.12283 4.14757 4.30523 4.39932 4.56648 4.61338 4.67156 4.71073 4.72555 4.82810 4.89435 4.94106 4.97051 5.02574 5.11063 5.12384 5.20766 5.26477 5.35930 5.43766 5.51599 5.58492 5.65139 5.70108 5.84756 6.13162 6.20011 6.74230 6.83482 7.05532 7.41145 8.90931 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.027487 B = 0.006038 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.433139 B = 4636.171876 C = 4997.264845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.229 3.771 3 H -0.029 1.029 4 C -0.522 4.522 5 H 0.067 0.933 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.963 3.037 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.269 1.269 12 N -0.508 5.508 13 C 0.045 3.955 14 C 0.140 3.860 15 C -0.226 4.226 16 C 0.105 3.895 17 N -0.514 5.514 18 C 0.123 3.877 19 C -0.121 4.121 20 C -0.059 4.059 21 C -0.115 4.115 22 C -0.115 4.115 23 C -0.060 4.060 24 H 0.033 0.967 25 H 0.007 0.993 26 H 0.062 0.938 27 H 0.263 0.737 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.015 0.985 31 H 0.119 0.881 32 H 0.176 0.824 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.056 0.944 39 H 0.095 0.905 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.929 -4.907 13.825 14.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.124 3.876 3 H -0.012 1.012 4 C -0.560 4.560 5 H 0.085 0.915 6 C -0.185 4.185 7 N -0.560 5.560 8 Si 0.788 3.212 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.194 1.194 12 N -0.230 5.230 13 C -0.101 4.101 14 C 0.037 3.963 15 C -0.248 4.248 16 C -0.054 4.054 17 N -0.223 5.223 18 C -0.013 4.013 19 C -0.124 4.124 20 C -0.097 4.097 21 C -0.152 4.152 22 C -0.152 4.152 23 C -0.098 4.098 24 H 0.052 0.948 25 H 0.026 0.974 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.034 0.966 31 H 0.137 0.863 32 H 0.193 0.807 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.075 0.925 39 H 0.114 0.886 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.476 -4.870 14.406 15.279 hybrid contribution 1.058 0.725 -2.231 2.573 sum -0.419 -4.145 12.176 12.869 Atomic orbital electron populations 1.21548 0.97644 0.99022 0.98780 1.19064 0.92208 0.90353 0.85974 1.01173 1.21352 1.31584 1.12633 0.90428 0.91532 1.25723 0.95183 0.95653 1.01989 1.70014 1.37553 1.24168 1.24302 0.85534 0.78796 0.78655 0.78201 1.19550 1.21186 1.19443 1.59680 1.11095 1.51849 1.00351 1.22244 0.85679 0.99576 1.02640 1.19574 0.93878 0.91128 0.91689 1.22749 1.04647 0.97102 1.00343 1.22723 0.92924 1.00357 0.89382 1.67616 1.13817 1.08573 1.32340 1.21493 0.95790 0.89708 0.94273 1.20635 0.98560 0.98850 0.94343 1.20174 1.01211 0.89876 0.98471 1.21597 0.98987 0.98922 0.95689 1.21567 0.97572 0.95087 1.01005 1.20410 0.97760 0.96736 0.94896 0.94785 0.97395 0.91878 0.92827 0.91196 0.90543 0.96635 0.86312 0.80719 0.92203 0.91066 0.89691 0.91099 0.88129 0.92524 0.88640 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.67 8.84 71.98 0.64 -5.04 16 2 C 0.23 11.65 1.84 44.17 0.08 11.73 16 3 H -0.03 -1.66 7.18 -2.39 -0.02 -1.67 16 4 C -0.52 -28.00 7.88 25.60 0.20 -27.80 16 5 H 0.07 3.48 6.41 -2.91 -0.02 3.46 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -52.67 11.32 21.45 0.24 -52.42 16 8 Si 0.96 42.76 29.54 68.60 2.03 44.78 16 9 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 10 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 12 N -0.51 -21.84 3.66 -699.33 -2.56 -24.40 16 13 C 0.05 1.75 9.11 127.69 1.16 2.91 16 14 C 0.14 5.52 3.29 38.64 0.13 5.65 16 15 C -0.23 -8.53 8.66 22.44 0.19 -8.34 16 16 C 0.10 3.46 11.18 84.64 0.95 4.40 16 17 N -0.51 -17.13 10.18 -184.30 -1.88 -19.01 16 18 C 0.12 3.88 6.62 42.20 0.28 4.16 16 19 C -0.12 -4.21 5.75 -19.73 -0.11 -4.32 16 20 C -0.06 -1.82 5.28 29.71 0.16 -1.66 16 21 C -0.11 -2.45 5.99 30.60 0.18 -2.27 16 22 C -0.11 -2.22 5.96 30.58 0.18 -2.04 16 23 C -0.06 -1.37 5.92 29.76 0.18 -1.19 16 24 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.01 0.35 7.22 -2.38 -0.02 0.33 16 26 H 0.06 3.51 6.07 -2.39 -0.01 3.49 16 27 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 28 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.08 3.08 6.10 -2.38 -0.01 3.06 16 30 H 0.02 0.59 7.40 -2.39 -0.02 0.57 16 31 H 0.12 4.61 7.16 -2.91 -0.02 4.59 16 32 H 0.18 4.57 8.06 -2.91 -0.02 4.55 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.07 2.32 7.76 -2.39 -0.02 2.30 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.41 8.10 -2.39 -0.02 1.39 16 37 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 39 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -61.54 312.50 3.51 -58.03 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 1.01 Total: 15.64 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 4.66 Total: -22.62 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -4.19 Total: -95.83 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -61.54 3.51 -58.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709076633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.140 kcal (2) G-P(sol) polarization free energy of solvation -61.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds