Wall clock time and date at job start Mon Mar 30 2020 06:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47627 * 2 1 4 4 C 1.50705 * 109.47276 * 120.00122 * 2 1 3 5 5 H 1.07999 * 119.99932 * 119.99831 * 4 2 1 6 6 C 1.37873 * 120.00150 * 300.00145 * 4 2 1 7 7 N 1.31517 * 120.00215 * 179.97438 * 6 4 2 8 8 Si 1.86805 * 119.99884 * 359.97438 * 6 4 2 9 9 H 1.48510 * 109.46935 * 90.00070 * 8 6 4 10 10 H 1.48496 * 109.47329 * 210.00162 * 8 6 4 11 11 H 1.48504 * 109.47166 * 330.00344 * 8 6 4 12 12 N 1.46902 * 109.47151 * 240.00163 * 2 1 3 13 13 C 1.46903 * 110.99844 * 183.95757 * 12 2 1 14 14 C 1.39166 * 111.00019 * 60.00014 * 12 2 1 15 15 C 1.39285 * 120.64567 * 60.00267 * 14 12 2 16 16 C 1.37883 * 118.74066 * 179.97438 * 15 14 12 17 17 N 1.31659 * 120.69818 * 0.11377 * 16 15 14 18 18 C 1.32814 * 122.59857 * 359.97438 * 17 16 15 19 19 C 1.37327 * 120.13952 * 359.77182 * 18 17 16 20 20 C 1.50481 * 122.89961 * 180.73860 * 19 18 17 21 21 C 1.52765 * 110.58379 * 342.40779 * 20 19 18 22 22 C 1.53324 * 108.35408 * 50.74905 * 21 20 19 23 23 C 1.50729 * 117.52338 * 179.65851 * 18 17 16 24 24 H 1.08999 * 109.47074 * 59.99501 * 1 2 3 25 25 H 1.08997 * 109.47164 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46934 * 299.99714 * 1 2 3 27 27 H 0.96999 * 119.99544 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47161 * 296.03842 * 13 12 2 29 29 H 1.08991 * 109.47619 * 56.04354 * 13 12 2 30 30 H 1.09002 * 109.46951 * 176.04622 * 13 12 2 31 31 H 1.07998 * 120.62690 * 359.71255 * 15 14 12 32 32 H 1.08003 * 119.65008 * 180.08502 * 16 15 14 33 33 H 1.09002 * 109.25621 * 102.69158 * 20 19 18 34 34 H 1.09006 * 109.25410 * 222.12293 * 20 19 18 35 35 H 1.09004 * 109.68474 * 291.03957 * 21 20 19 36 36 H 1.08994 * 109.71934 * 170.48667 * 21 20 19 37 37 H 1.08996 * 109.67805 * 170.52123 * 22 21 20 38 38 H 1.09003 * 109.70403 * 50.00862 * 22 21 20 39 39 H 1.09001 * 109.26320 * 282.29865 * 23 18 17 40 40 H 1.09004 * 109.25368 * 41.77298 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1373 -0.8598 3.5566 8 14 0.6258 1.2797 2.6542 9 1 -0.8021 0.8743 2.6994 10 1 0.9771 1.9952 3.9071 11 1 0.8490 2.1773 1.4923 12 7 2.0196 -0.6925 -1.1995 13 6 3.4850 -0.7946 -1.1870 14 6 1.5734 -0.0614 -2.3568 15 6 1.9055 1.2665 -2.6144 16 6 1.4427 1.8528 -3.7734 17 7 0.6990 1.1723 -4.6203 18 6 0.3568 -0.0944 -4.4144 19 6 0.7836 -0.7491 -3.2852 20 6 0.4466 -2.1872 -2.9976 21 6 -0.7334 -2.6439 -3.8536 22 6 -0.4398 -2.2804 -5.3139 23 6 -0.5052 -0.7611 -5.4557 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9032 -0.5281 4.4375 28 1 3.9192 0.2043 -1.2300 29 1 3.8069 -1.2915 -0.2719 30 1 3.8164 -1.3722 -2.0500 31 1 2.5104 1.8276 -1.9175 32 1 1.6925 2.8813 -3.9885 33 1 1.3132 -2.8105 -3.2182 34 1 0.1881 -2.2920 -1.9438 35 1 -1.6422 -2.1394 -3.5252 36 1 -0.8587 -3.7227 -3.7617 37 1 -1.1833 -2.7419 -5.9637 38 1 0.5551 -2.6319 -5.5872 39 1 -1.5372 -0.4327 -5.3322 40 1 -0.1541 -0.4779 -6.4480 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709076639.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:20 Heat of formation + Delta-G solvation = 37.077973 kcal Electronic energy + Delta-G solvation = -20294.376259 eV Core-core repulsion = 17494.766593 eV Total energy + Delta-G solvation = -2799.609666 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.60145 -37.51477 -36.23370 -33.17318 -31.55654 -30.28848 -30.25559 -29.00720 -25.70647 -24.56305 -23.69808 -23.07541 -21.77016 -20.01625 -19.13316 -17.18869 -16.27546 -15.93651 -15.56300 -15.19163 -14.22164 -14.09355 -13.95638 -13.74130 -13.39635 -13.18797 -13.06200 -12.64495 -12.53923 -12.25772 -12.03971 -11.83260 -11.58907 -11.07073 -10.83953 -10.74394 -10.72836 -10.65172 -10.41001 -10.20747 -9.63547 -9.23359 -9.14406 -8.84170 -8.64794 -8.43121 -7.69753 -6.16874 -4.16812 1.43301 1.57172 3.19992 3.30325 3.31886 4.02344 4.30677 4.38906 4.45433 4.91406 4.99091 5.07196 5.14817 5.18562 5.30331 5.44492 5.60481 5.68501 5.71283 5.84302 5.87511 5.97031 6.03644 6.09056 6.09334 6.19799 6.22880 6.26648 6.34019 6.41459 6.44912 6.57557 6.70601 6.75984 6.79336 6.97901 7.12997 7.46676 7.73754 7.99408 8.28348 8.53130 8.87835 9.43960 10.95331 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025769 B = 0.006607 C = 0.006226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.330494 B = 4236.656047 C = 4496.513769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.189 3.811 3 H 0.004 0.996 4 C -0.510 4.510 5 H 0.086 0.914 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.269 1.269 12 N -0.498 5.498 13 C 0.042 3.958 14 C 0.159 3.841 15 C -0.213 4.213 16 C 0.103 3.897 17 N -0.504 5.504 18 C 0.126 3.874 19 C -0.109 4.109 20 C -0.065 4.065 21 C -0.122 4.122 22 C -0.118 4.118 23 C -0.062 4.062 24 H 0.025 0.975 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.265 0.735 28 H 0.020 0.980 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.129 0.871 32 H 0.148 0.852 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.375 -0.024 -15.179 15.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.083 3.917 3 H 0.021 0.979 4 C -0.548 4.548 5 H 0.104 0.896 6 C -0.128 4.128 7 N -0.532 5.532 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.223 1.223 11 H -0.195 1.195 12 N -0.220 5.220 13 C -0.104 4.104 14 C 0.056 3.944 15 C -0.236 4.236 16 C -0.056 4.056 17 N -0.214 5.214 18 C -0.009 4.009 19 C -0.112 4.112 20 C -0.103 4.103 21 C -0.160 4.160 22 C -0.156 4.156 23 C -0.100 4.100 24 H 0.044 0.956 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.147 0.853 32 H 0.165 0.835 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.837 -0.109 -15.685 16.148 hybrid contribution 0.082 1.490 1.191 1.909 sum -3.755 1.381 -14.495 15.037 Atomic orbital electron populations 1.22155 0.98299 1.01389 0.98363 1.19783 0.91617 0.92643 0.87609 0.97884 1.20914 1.32405 1.13854 0.87656 0.89598 1.24876 0.95654 0.96516 0.95763 1.69864 1.45353 1.40089 0.97935 0.86935 0.80914 0.83855 0.76991 1.20421 1.22274 1.19463 1.59563 1.10905 1.51555 0.99945 1.22294 0.85599 0.99693 1.02830 1.19415 0.92774 0.90403 0.91790 1.22752 1.03878 0.97218 0.99716 1.22325 0.93757 0.99241 0.90268 1.67488 1.13509 1.08164 1.32221 1.20857 0.96386 0.89948 0.93750 1.20405 0.98795 0.97920 0.94094 1.20229 0.97710 0.90789 1.01571 1.21623 0.98714 1.00953 0.94708 1.21570 1.02045 0.94755 0.97271 1.20277 0.98531 0.94416 0.96788 0.95584 0.91944 0.93752 0.92451 0.96190 0.88833 0.93258 0.85283 0.83481 0.90859 0.88996 0.91819 0.91402 0.91377 0.91638 0.90360 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.55 37.15 0.32 -2.90 16 2 C 0.19 4.37 1.43 -68.86 -0.10 4.27 16 3 H 0.00 0.09 6.23 -51.93 -0.32 -0.23 16 4 C -0.51 -13.68 8.46 -34.44 -0.29 -13.97 16 5 H 0.09 2.47 6.65 -52.49 -0.35 2.12 16 6 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 7 N -0.89 -26.47 13.96 55.43 0.77 -25.69 16 8 Si 0.88 21.59 24.37 -169.99 -4.14 17.45 16 9 H -0.28 -6.66 6.87 56.52 0.39 -6.27 16 10 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.27 -6.40 6.53 56.52 0.37 -6.03 16 12 N -0.50 -10.05 3.66 -172.39 -0.63 -10.68 16 13 C 0.04 0.79 9.11 60.07 0.55 1.34 16 14 C 0.16 2.93 3.29 -83.50 -0.27 2.65 16 15 C -0.21 -3.69 8.66 -39.32 -0.34 -4.03 16 16 C 0.10 1.63 11.18 -17.76 -0.20 1.43 16 17 N -0.50 -8.29 10.18 -9.61 -0.10 -8.38 16 18 C 0.13 1.97 6.62 -82.48 -0.55 1.42 16 19 C -0.11 -1.82 5.75 -104.42 -0.60 -2.42 16 20 C -0.07 -0.97 5.28 -28.11 -0.15 -1.12 16 21 C -0.12 -1.44 5.99 -26.68 -0.16 -1.60 16 22 C -0.12 -1.24 5.97 -26.71 -0.16 -1.40 16 23 C -0.06 -0.75 5.91 -28.01 -0.17 -0.92 16 24 H 0.03 0.53 7.22 -51.93 -0.37 0.16 16 25 H 0.06 1.36 8.08 -51.93 -0.42 0.95 16 26 H 0.04 1.02 3.27 -51.93 -0.17 0.85 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.02 0.36 7.41 -51.93 -0.38 -0.03 16 29 H 0.09 1.90 6.10 -51.93 -0.32 1.59 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.13 2.20 7.16 -52.49 -0.38 1.82 16 32 H 0.15 1.87 8.06 -52.48 -0.42 1.44 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.09 1.56 7.70 -51.93 -0.40 1.16 16 35 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 305.57 15.07 4.60 4.60 Total: -1.00 -29.39 305.57 -7.81 -37.20 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.10 Total: 0.76 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -2.22 Total: -15.25 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.04 Total: -44.76 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.14 Total: 17.45 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.39 -7.81 -37.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709076639.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.276 kcal (2) G-P(sol) polarization free energy of solvation -29.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds