Wall clock time and date at job start Mon Mar 30 2020 06:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47627 * 2 1 4 4 C 1.50705 * 109.47276 * 120.00122 * 2 1 3 5 5 H 1.07999 * 119.99932 * 119.99831 * 4 2 1 6 6 C 1.37873 * 120.00150 * 300.00145 * 4 2 1 7 7 N 1.31517 * 120.00215 * 179.97438 * 6 4 2 8 8 Si 1.86805 * 119.99884 * 359.97438 * 6 4 2 9 9 H 1.48510 * 109.46935 * 90.00070 * 8 6 4 10 10 H 1.48496 * 109.47329 * 210.00162 * 8 6 4 11 11 H 1.48504 * 109.47166 * 330.00344 * 8 6 4 12 12 N 1.46902 * 109.47151 * 240.00163 * 2 1 3 13 13 C 1.46903 * 110.99844 * 183.95757 * 12 2 1 14 14 C 1.39166 * 111.00019 * 60.00014 * 12 2 1 15 15 C 1.39285 * 120.64567 * 60.00267 * 14 12 2 16 16 C 1.37883 * 118.74066 * 179.97438 * 15 14 12 17 17 N 1.31659 * 120.69818 * 0.11377 * 16 15 14 18 18 C 1.32814 * 122.59857 * 359.97438 * 17 16 15 19 19 C 1.37327 * 120.13952 * 359.77182 * 18 17 16 20 20 C 1.50481 * 122.89961 * 180.73860 * 19 18 17 21 21 C 1.52765 * 110.58379 * 342.40779 * 20 19 18 22 22 C 1.53324 * 108.35408 * 50.74905 * 21 20 19 23 23 C 1.50729 * 117.52338 * 179.65851 * 18 17 16 24 24 H 1.08999 * 109.47074 * 59.99501 * 1 2 3 25 25 H 1.08997 * 109.47164 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46934 * 299.99714 * 1 2 3 27 27 H 0.96999 * 119.99544 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47161 * 296.03842 * 13 12 2 29 29 H 1.08991 * 109.47619 * 56.04354 * 13 12 2 30 30 H 1.09002 * 109.46951 * 176.04622 * 13 12 2 31 31 H 1.07998 * 120.62690 * 359.71255 * 15 14 12 32 32 H 1.08003 * 119.65008 * 180.08502 * 16 15 14 33 33 H 1.09002 * 109.25621 * 102.69158 * 20 19 18 34 34 H 1.09006 * 109.25410 * 222.12293 * 20 19 18 35 35 H 1.09004 * 109.68474 * 291.03957 * 21 20 19 36 36 H 1.08994 * 109.71934 * 170.48667 * 21 20 19 37 37 H 1.08996 * 109.67805 * 170.52123 * 22 21 20 38 38 H 1.09003 * 109.70403 * 50.00862 * 22 21 20 39 39 H 1.09001 * 109.26320 * 282.29865 * 23 18 17 40 40 H 1.09004 * 109.25368 * 41.77298 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1373 -0.8598 3.5566 8 14 0.6258 1.2797 2.6542 9 1 -0.8021 0.8743 2.6994 10 1 0.9771 1.9952 3.9071 11 1 0.8490 2.1773 1.4923 12 7 2.0196 -0.6925 -1.1995 13 6 3.4850 -0.7946 -1.1870 14 6 1.5734 -0.0614 -2.3568 15 6 1.9055 1.2665 -2.6144 16 6 1.4427 1.8528 -3.7734 17 7 0.6990 1.1723 -4.6203 18 6 0.3568 -0.0944 -4.4144 19 6 0.7836 -0.7491 -3.2852 20 6 0.4466 -2.1872 -2.9976 21 6 -0.7334 -2.6439 -3.8536 22 6 -0.4398 -2.2804 -5.3139 23 6 -0.5052 -0.7611 -5.4557 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9032 -0.5281 4.4375 28 1 3.9192 0.2043 -1.2300 29 1 3.8069 -1.2915 -0.2719 30 1 3.8164 -1.3722 -2.0500 31 1 2.5104 1.8276 -1.9175 32 1 1.6925 2.8813 -3.9885 33 1 1.3132 -2.8105 -3.2182 34 1 0.1881 -2.2920 -1.9438 35 1 -1.6422 -2.1394 -3.5252 36 1 -0.8587 -3.7227 -3.7617 37 1 -1.1833 -2.7419 -5.9637 38 1 0.5551 -2.6319 -5.5872 39 1 -1.5372 -0.4327 -5.3322 40 1 -0.1541 -0.4779 -6.4480 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709076639.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:20 Heat of formation + Delta-G solvation = 19.475222 kcal Electronic energy + Delta-G solvation = -20295.139572 eV Core-core repulsion = 17494.766593 eV Total energy + Delta-G solvation = -2800.372979 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.88751 -39.01116 -37.33139 -35.08145 -33.08652 -31.94934 -31.41778 -30.22044 -27.52020 -26.25955 -24.85750 -24.24528 -23.28622 -21.37239 -20.39379 -19.04538 -17.64807 -17.45125 -17.19437 -16.48520 -15.78587 -15.54044 -15.27288 -14.93489 -14.82822 -14.58723 -14.33740 -14.29159 -14.02235 -13.59728 -13.58629 -13.21198 -12.82514 -12.70258 -12.66111 -12.45103 -12.15390 -11.69283 -11.62920 -11.53760 -11.41984 -11.21778 -10.80228 -10.40361 -10.18018 -9.65191 -9.30959 -8.33108 -6.36538 0.16878 0.25425 1.25145 1.30094 1.38903 2.25659 2.77077 2.90590 3.02084 3.34336 3.83640 3.92428 4.06677 4.08662 4.12402 4.28868 4.32091 4.41938 4.50398 4.56287 4.59115 4.62446 4.70453 4.72877 4.79021 4.87491 4.93084 5.03190 5.09917 5.10700 5.18300 5.26038 5.30119 5.39656 5.49148 5.50844 5.62957 5.73571 5.94534 6.20979 6.67341 6.70185 7.04417 7.27679 8.82457 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025769 B = 0.006607 C = 0.006226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.330494 B = 4236.656047 C = 4496.513769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.196 3.804 3 H -0.005 1.005 4 C -0.507 4.507 5 H 0.053 0.947 6 C 0.023 3.977 7 N -0.940 5.940 8 Si 0.938 3.062 9 H -0.267 1.267 10 H -0.294 1.294 11 H -0.257 1.257 12 N -0.501 5.501 13 C 0.046 3.954 14 C 0.135 3.865 15 C -0.225 4.225 16 C 0.107 3.893 17 N -0.512 5.512 18 C 0.125 3.875 19 C -0.118 4.118 20 C -0.063 4.063 21 C -0.118 4.118 22 C -0.111 4.111 23 C -0.062 4.062 24 H 0.040 0.960 25 H 0.059 0.941 26 H 0.038 0.962 27 H 0.267 0.733 28 H 0.024 0.976 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.126 0.874 32 H 0.178 0.822 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.906 0.744 -17.729 18.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.089 3.911 3 H 0.013 0.987 4 C -0.545 4.545 5 H 0.071 0.929 6 C -0.176 4.176 7 N -0.580 5.580 8 Si 0.765 3.235 9 H -0.193 1.193 10 H -0.222 1.222 11 H -0.182 1.182 12 N -0.223 5.223 13 C -0.100 4.100 14 C 0.032 3.968 15 C -0.247 4.247 16 C -0.052 4.052 17 N -0.222 5.222 18 C -0.010 4.010 19 C -0.121 4.121 20 C -0.101 4.101 21 C -0.156 4.156 22 C -0.149 4.149 23 C -0.100 4.100 24 H 0.059 0.941 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.144 0.856 32 H 0.195 0.805 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.368 0.657 -18.265 19.048 hybrid contribution 0.629 1.197 1.902 2.333 sum -4.740 1.854 -16.363 17.136 Atomic orbital electron populations 1.22014 0.97259 1.01355 0.98670 1.19542 0.92278 0.91717 0.87524 0.98738 1.21114 1.31276 1.12737 0.89385 0.92887 1.25609 0.97088 0.99415 0.95465 1.69995 1.47330 1.42115 0.98540 0.86024 0.79609 0.80594 0.77226 1.19318 1.22199 1.18157 1.59427 1.11411 1.51574 0.99845 1.22231 0.85283 0.99979 1.02505 1.19531 0.94306 0.91301 0.91631 1.22795 1.04445 0.96908 1.00558 1.22766 0.92747 1.00416 0.89289 1.67625 1.13699 1.08570 1.32307 1.21451 0.95835 0.89770 0.93954 1.20621 0.98507 0.98705 0.94230 1.20207 0.99143 0.90091 1.00657 1.21612 0.96964 1.01927 0.95056 1.21560 1.03061 0.93672 0.96596 1.20420 0.98253 0.95243 0.96060 0.94077 0.92219 0.94381 0.92356 0.95768 0.91332 0.91035 0.85583 0.80507 0.90890 0.91713 0.91999 0.89739 0.88445 0.91617 0.89307 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.92 8.55 71.98 0.62 -5.30 16 2 C 0.20 9.10 1.43 44.17 0.06 9.16 16 3 H 0.00 -0.23 6.23 -2.39 -0.01 -0.25 16 4 C -0.51 -27.96 8.46 25.60 0.22 -27.74 16 5 H 0.05 3.21 6.65 -2.91 -0.02 3.19 16 6 C 0.02 1.28 5.45 84.65 0.46 1.74 16 7 N -0.94 -57.19 13.96 21.45 0.30 -56.90 16 8 Si 0.94 44.46 24.37 68.60 1.67 46.14 16 9 H -0.27 -12.16 6.87 99.48 0.68 -11.47 16 10 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 11 H -0.26 -11.58 6.53 99.48 0.65 -10.93 16 12 N -0.50 -20.36 3.66 -699.31 -2.56 -22.92 16 13 C 0.05 1.77 9.11 127.69 1.16 2.93 16 14 C 0.13 4.84 3.29 38.65 0.13 4.97 16 15 C -0.22 -7.48 8.66 22.44 0.19 -7.29 16 16 C 0.11 3.10 11.18 84.63 0.95 4.05 16 17 N -0.51 -15.45 10.18 -184.31 -1.88 -17.33 16 18 C 0.13 3.60 6.62 42.20 0.28 3.88 16 19 C -0.12 -3.75 5.75 -19.73 -0.11 -3.86 16 20 C -0.06 -1.80 5.28 29.70 0.16 -1.65 16 21 C -0.12 -2.46 5.99 30.62 0.18 -2.28 16 22 C -0.11 -1.91 5.97 30.61 0.18 -1.72 16 23 C -0.06 -1.28 5.91 29.76 0.18 -1.11 16 24 H 0.04 1.64 7.22 -2.39 -0.02 1.62 16 25 H 0.06 2.60 8.08 -2.39 -0.02 2.58 16 26 H 0.04 1.69 3.27 -2.39 -0.01 1.68 16 27 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 28 H 0.02 0.88 7.41 -2.39 -0.02 0.86 16 29 H 0.07 2.93 6.10 -2.39 -0.01 2.92 16 30 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.13 4.19 7.16 -2.91 -0.02 4.17 16 32 H 0.18 3.94 8.06 -2.91 -0.02 3.91 16 33 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.06 2.20 7.70 -2.38 -0.02 2.18 16 35 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 1.15 8.10 -2.39 -0.02 1.13 16 39 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 40 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -63.72 305.57 3.13 -60.60 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.94 Total: 14.62 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: 4.65 Total: -24.21 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -4.14 Total: -97.14 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.67 Total: 46.14 kcal Total: -63.72 3.13 -60.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709076639.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.072 kcal (2) G-P(sol) polarization free energy of solvation -63.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds