Wall clock time and date at job start Mon Mar 30 2020 06:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46898 * 109.46790 * 2 1 4 4 C 1.46904 * 110.99675 * 193.95458 * 3 2 1 5 5 C 1.50701 * 109.47203 * 66.04838 * 4 3 2 6 6 H 1.08000 * 119.99608 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00175 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99754 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 119.99958 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47156 * 90.00010 * 9 7 5 11 11 H 1.48504 * 109.47047 * 209.99749 * 9 7 5 12 12 H 1.48504 * 109.47221 * 329.99599 * 9 7 5 13 13 C 1.39168 * 110.99891 * 70.00470 * 3 2 1 14 14 C 1.39279 * 120.64577 * 63.92819 * 13 3 2 15 15 C 1.37889 * 118.73920 * 179.97438 * 14 13 3 16 16 N 1.31654 * 120.69808 * 0.10830 * 15 14 13 17 17 C 1.32874 * 122.58785 * 359.96320 * 16 15 14 18 18 C 1.37277 * 120.13673 * 359.87575 * 17 16 15 19 19 C 1.50484 * 122.89436 * 180.28731 * 18 17 16 20 20 C 1.52768 * 110.56931 * 342.64361 * 19 18 17 21 21 C 1.53330 * 108.33176 * 50.74223 * 20 19 18 22 22 C 1.50737 * 117.48097 * 179.72279 * 17 16 15 23 23 H 1.08998 * 109.46791 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46741 * 299.99833 * 1 2 3 25 25 H 1.08993 * 109.46862 * 59.99802 * 1 2 3 26 26 H 1.09004 * 109.47034 * 240.00392 * 2 1 3 27 27 H 1.09002 * 109.46962 * 120.00434 * 2 1 3 28 28 H 1.09000 * 109.46916 * 186.05070 * 4 3 2 29 29 H 1.09005 * 109.47491 * 306.04734 * 4 3 2 30 30 H 0.96998 * 119.99833 * 179.97438 * 8 7 5 31 31 H 1.07999 * 120.63169 * 0.02562 * 14 13 3 32 32 H 1.08003 * 119.64815 * 180.13464 * 15 14 13 33 33 H 1.09001 * 109.25415 * 222.36650 * 19 18 17 34 34 H 1.08995 * 109.22578 * 102.90472 * 19 18 17 35 35 H 1.08997 * 109.69469 * 291.03103 * 20 19 18 36 36 H 1.09001 * 109.68932 * 170.44836 * 20 19 18 37 37 H 1.08996 * 109.68139 * 170.44491 * 21 20 19 38 38 H 1.09002 * 109.67386 * 49.91462 * 21 20 19 39 39 H 1.09002 * 109.25763 * 42.09246 * 22 17 16 40 40 H 1.08998 * 109.25229 * 282.62058 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4500 1.4377 -0.3307 5 6 3.6536 0.9855 -1.7538 6 1 2.8052 0.6883 -2.3525 7 6 4.9229 0.9502 -2.2912 8 7 5.9559 1.3117 -1.5619 9 14 5.1750 0.3904 -4.0553 10 1 5.0921 1.5626 -4.9633 11 1 6.5111 -0.2442 -4.1871 12 1 4.1224 -0.5923 -4.4181 13 6 1.7670 2.0033 1.2209 14 6 2.3670 1.5395 2.3892 15 6 2.0893 2.1819 3.5773 16 7 1.2711 3.2128 3.6086 17 6 0.6760 3.6875 2.5196 18 6 0.9051 3.1032 1.2987 19 6 0.2695 3.5934 0.0258 20 6 -0.9316 4.4855 0.3346 21 6 -0.4933 5.5517 1.3456 22 6 -0.2441 4.8695 2.6889 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8900 28 1 3.8113 2.4600 -0.2191 29 1 4.0029 0.7815 0.3416 30 1 6.8489 1.2865 -1.9398 31 1 3.0377 0.6934 2.3648 32 1 2.5483 1.8360 4.4917 33 1 -0.0601 2.7381 -0.5639 34 1 1.0028 4.1628 -0.5453 35 1 -1.7356 3.8848 0.7597 36 1 -1.2765 4.9668 -0.5806 37 1 -1.2786 6.2997 1.4539 38 1 0.4239 6.0293 1.0008 39 1 0.2104 5.5834 3.3759 40 1 -1.1942 4.5292 3.1008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709091064.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:40 Heat of formation + Delta-G solvation = 20.525722 kcal Electronic energy + Delta-G solvation = -20018.461133 eV Core-core repulsion = 17218.133708 eV Total energy + Delta-G solvation = -2800.327425 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.46989 -37.28268 -36.13882 -32.88062 -31.76383 -30.21852 -30.16662 -28.89688 -26.38310 -23.80924 -23.11619 -22.56388 -22.21963 -20.10732 -19.16737 -16.90934 -16.14507 -15.81479 -15.45168 -14.99952 -14.21371 -14.06639 -13.88100 -13.74254 -13.48512 -13.22103 -12.95525 -12.48087 -12.36083 -12.21166 -11.96019 -11.55455 -11.35326 -11.11055 -10.86264 -10.72240 -10.65596 -10.58594 -10.44566 -10.26692 -10.10757 -9.38236 -9.06393 -8.68196 -8.53050 -8.32375 -7.55376 -6.11278 -4.13864 1.54837 1.69311 3.27178 3.33512 3.36293 4.13286 4.33035 4.50565 4.61520 4.99854 5.05478 5.14728 5.24371 5.27544 5.39533 5.55065 5.60339 5.69741 5.74081 5.78884 5.85839 5.92124 5.96866 6.06323 6.08664 6.19691 6.23676 6.26981 6.33773 6.51156 6.53338 6.66412 6.70790 6.89015 7.00952 7.20360 7.25367 7.73293 7.93382 8.05045 8.38779 8.47082 8.92737 9.50611 10.99429 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022664 B = 0.005973 C = 0.005700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.161920 B = 4686.465585 C = 4911.474045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.062 3.938 3 N -0.507 5.507 4 C 0.202 3.798 5 C -0.511 4.511 6 H 0.066 0.934 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.162 3.838 14 C -0.211 4.211 15 C 0.103 3.897 16 N -0.505 5.505 17 C 0.124 3.876 18 C -0.110 4.110 19 C -0.064 4.064 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.061 4.061 23 H 0.051 0.949 24 H 0.043 0.957 25 H 0.060 0.940 26 H 0.093 0.907 27 H 0.025 0.975 28 H 0.030 0.970 29 H -0.003 1.003 30 H 0.263 0.737 31 H 0.129 0.871 32 H 0.147 0.853 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.049 3.339 6.027 13.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.065 4.065 3 N -0.229 5.229 4 C 0.079 3.921 5 C -0.550 4.550 6 H 0.084 0.916 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.198 1.198 13 C 0.059 3.941 14 C -0.233 4.233 15 C -0.057 4.057 16 N -0.215 5.215 17 C -0.012 4.012 18 C -0.113 4.113 19 C -0.102 4.102 20 C -0.159 4.159 21 C -0.158 4.158 22 C -0.099 4.099 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.111 0.889 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.015 0.985 30 H 0.072 0.928 31 H 0.147 0.853 32 H 0.165 0.835 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.254 3.998 6.418 14.399 hybrid contribution 1.217 -1.271 -1.014 2.031 sum -11.037 2.727 5.404 12.588 Atomic orbital electron populations 1.21812 0.96328 1.00533 1.01648 1.22058 0.94289 0.88531 1.01618 1.59767 1.22467 1.16269 1.24363 1.19777 0.78631 0.97246 0.96477 1.21099 0.92779 1.44202 0.96878 0.91585 1.24988 0.95885 0.95453 0.98139 1.69961 0.98976 1.47953 1.36610 0.86469 0.77422 0.78868 0.84493 1.20558 1.21275 1.19774 1.19422 0.91914 0.92887 0.89861 1.22744 1.02876 1.03070 0.94592 1.22314 0.94477 0.91638 0.97226 1.67502 1.09351 1.12945 1.31714 1.20835 0.96166 0.96177 0.87989 1.20376 0.98829 0.96127 0.95944 1.20218 0.96228 0.99757 0.93963 1.21622 0.98043 0.97227 0.98987 1.21575 1.01644 0.97763 0.94785 1.20259 0.97659 0.93902 0.98070 0.93037 0.93782 0.92056 0.88905 0.95710 0.95165 0.98497 0.92776 0.85316 0.83549 0.89574 0.90443 0.92054 0.91526 0.91446 0.91471 0.90308 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.58 37.16 0.36 -1.91 16 2 C 0.06 1.16 5.45 -3.82 -0.02 1.14 16 3 N -0.51 -10.61 3.51 -172.17 -0.60 -11.22 16 4 C 0.20 5.13 4.31 -4.97 -0.02 5.11 16 5 C -0.51 -13.83 8.31 -34.44 -0.29 -14.12 16 6 H 0.07 1.75 7.23 -52.49 -0.38 1.37 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.16 13.29 55.43 0.74 -25.43 16 9 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 C 0.16 3.14 3.71 -83.50 -0.31 2.83 16 14 C -0.21 -3.86 8.62 -39.32 -0.34 -4.20 16 15 C 0.10 1.71 11.18 -17.76 -0.20 1.51 16 16 N -0.51 -8.73 10.19 -9.60 -0.10 -8.83 16 17 C 0.12 2.03 6.62 -82.47 -0.55 1.49 16 18 C -0.11 -1.92 5.75 -104.43 -0.60 -2.52 16 19 C -0.06 -1.00 5.28 -28.11 -0.15 -1.15 16 20 C -0.12 -1.46 5.99 -26.68 -0.16 -1.62 16 21 C -0.12 -1.35 5.97 -26.71 -0.16 -1.51 16 22 C -0.06 -0.78 5.92 -28.01 -0.17 -0.95 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.04 0.69 7.52 -51.93 -0.39 0.30 16 25 H 0.06 0.94 7.71 -51.93 -0.40 0.54 16 26 H 0.09 1.88 6.60 -51.93 -0.34 1.54 16 27 H 0.02 0.46 7.12 -51.93 -0.37 0.09 16 28 H 0.03 0.85 8.06 -51.93 -0.42 0.43 16 29 H 0.00 -0.08 7.54 -51.93 -0.39 -0.47 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.13 2.34 7.27 -52.49 -0.38 1.96 16 32 H 0.15 1.99 8.06 -52.48 -0.42 1.57 16 33 H 0.09 1.40 6.95 -51.93 -0.36 1.04 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 317.40 15.07 4.78 4.78 Total: -1.00 -29.39 317.40 -9.27 -38.66 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.37 Total: 0.33 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -2.70 Total: -14.40 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.03 Total: -45.48 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.39 -9.27 -38.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709091064.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.185 kcal (2) G-P(sol) polarization free energy of solvation -29.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds