Wall clock time and date at job start Mon Mar 30 2020 06:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46898 * 109.46790 * 2 1 4 4 C 1.46904 * 110.99675 * 193.95458 * 3 2 1 5 5 C 1.50701 * 109.47203 * 66.04838 * 4 3 2 6 6 H 1.08000 * 119.99608 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00175 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99754 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 119.99958 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47156 * 90.00010 * 9 7 5 11 11 H 1.48504 * 109.47047 * 209.99749 * 9 7 5 12 12 H 1.48504 * 109.47221 * 329.99599 * 9 7 5 13 13 C 1.39168 * 110.99891 * 70.00470 * 3 2 1 14 14 C 1.39279 * 120.64577 * 63.92819 * 13 3 2 15 15 C 1.37889 * 118.73920 * 179.97438 * 14 13 3 16 16 N 1.31654 * 120.69808 * 0.10830 * 15 14 13 17 17 C 1.32874 * 122.58785 * 359.96320 * 16 15 14 18 18 C 1.37277 * 120.13673 * 359.87575 * 17 16 15 19 19 C 1.50484 * 122.89436 * 180.28731 * 18 17 16 20 20 C 1.52768 * 110.56931 * 342.64361 * 19 18 17 21 21 C 1.53330 * 108.33176 * 50.74223 * 20 19 18 22 22 C 1.50737 * 117.48097 * 179.72279 * 17 16 15 23 23 H 1.08998 * 109.46791 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46741 * 299.99833 * 1 2 3 25 25 H 1.08993 * 109.46862 * 59.99802 * 1 2 3 26 26 H 1.09004 * 109.47034 * 240.00392 * 2 1 3 27 27 H 1.09002 * 109.46962 * 120.00434 * 2 1 3 28 28 H 1.09000 * 109.46916 * 186.05070 * 4 3 2 29 29 H 1.09005 * 109.47491 * 306.04734 * 4 3 2 30 30 H 0.96998 * 119.99833 * 179.97438 * 8 7 5 31 31 H 1.07999 * 120.63169 * 0.02562 * 14 13 3 32 32 H 1.08003 * 119.64815 * 180.13464 * 15 14 13 33 33 H 1.09001 * 109.25415 * 222.36650 * 19 18 17 34 34 H 1.08995 * 109.22578 * 102.90472 * 19 18 17 35 35 H 1.08997 * 109.69469 * 291.03103 * 20 19 18 36 36 H 1.09001 * 109.68932 * 170.44836 * 20 19 18 37 37 H 1.08996 * 109.68139 * 170.44491 * 21 20 19 38 38 H 1.09002 * 109.67386 * 49.91462 * 21 20 19 39 39 H 1.09002 * 109.25763 * 42.09246 * 22 17 16 40 40 H 1.08998 * 109.25229 * 282.62058 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4500 1.4377 -0.3307 5 6 3.6536 0.9855 -1.7538 6 1 2.8052 0.6883 -2.3525 7 6 4.9229 0.9502 -2.2912 8 7 5.9559 1.3117 -1.5619 9 14 5.1750 0.3904 -4.0553 10 1 5.0921 1.5626 -4.9633 11 1 6.5111 -0.2442 -4.1871 12 1 4.1224 -0.5923 -4.4181 13 6 1.7670 2.0033 1.2209 14 6 2.3670 1.5395 2.3892 15 6 2.0893 2.1819 3.5773 16 7 1.2711 3.2128 3.6086 17 6 0.6760 3.6875 2.5196 18 6 0.9051 3.1032 1.2987 19 6 0.2695 3.5934 0.0258 20 6 -0.9316 4.4855 0.3346 21 6 -0.4933 5.5517 1.3456 22 6 -0.2441 4.8695 2.6889 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8900 28 1 3.8113 2.4600 -0.2191 29 1 4.0029 0.7815 0.3416 30 1 6.8489 1.2865 -1.9398 31 1 3.0377 0.6934 2.3648 32 1 2.5483 1.8360 4.4917 33 1 -0.0601 2.7381 -0.5639 34 1 1.0028 4.1628 -0.5453 35 1 -1.7356 3.8848 0.7597 36 1 -1.2765 4.9668 -0.5806 37 1 -1.2786 6.2997 1.4539 38 1 0.4239 6.0293 1.0008 39 1 0.2104 5.5834 3.3759 40 1 -1.1942 4.5292 3.1008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709091064.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:39 Heat of formation + Delta-G solvation = 4.298694 kcal Electronic energy + Delta-G solvation = -20019.164790 eV Core-core repulsion = 17218.133708 eV Total energy + Delta-G solvation = -2801.031082 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.84201 -38.80722 -37.32510 -34.93730 -33.13788 -31.71479 -31.41568 -30.32380 -28.24612 -25.10097 -24.42391 -24.32740 -23.64128 -21.47425 -20.41197 -18.76500 -17.61941 -17.44503 -16.93625 -16.55114 -15.88565 -15.47279 -15.17557 -15.02698 -14.70419 -14.60289 -14.34136 -14.16480 -13.95180 -13.59118 -13.24039 -12.92051 -12.81770 -12.70709 -12.64294 -12.44653 -12.07061 -11.92724 -11.69396 -11.62256 -11.46537 -11.33534 -10.68172 -10.40877 -10.16505 -9.65672 -9.28431 -8.25164 -6.36260 0.17294 0.25969 1.40460 1.41763 1.52907 2.36951 2.77054 3.00276 3.09043 3.33911 3.83415 3.93211 4.05676 4.08027 4.11639 4.23998 4.28985 4.36028 4.52745 4.60715 4.67061 4.71685 4.78829 4.89680 4.92630 4.95932 5.00726 5.07295 5.10476 5.15262 5.22177 5.26112 5.33279 5.41848 5.50881 5.56969 5.63737 5.77249 6.00653 6.11276 6.67139 6.78185 7.03229 7.33648 8.86253 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022664 B = 0.005973 C = 0.005700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.161920 B = 4686.465585 C = 4911.474045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.060 3.940 3 N -0.503 5.503 4 C 0.223 3.777 5 C -0.523 4.523 6 H 0.070 0.930 7 C 0.003 3.997 8 N -0.935 5.935 9 Si 0.972 3.028 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.260 1.260 13 C 0.134 3.866 14 C -0.227 4.227 15 C 0.106 3.894 16 N -0.512 5.512 17 C 0.123 3.877 18 C -0.120 4.120 19 C -0.062 4.062 20 C -0.114 4.114 21 C -0.115 4.115 22 C -0.060 4.060 23 H 0.077 0.923 24 H 0.042 0.958 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.022 0.978 28 H -0.008 1.008 29 H -0.031 1.031 30 H 0.265 0.735 31 H 0.120 0.880 32 H 0.177 0.823 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.055 0.945 39 H 0.086 0.914 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.252 3.872 5.863 15.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.067 4.067 3 N -0.225 5.225 4 C 0.098 3.902 5 C -0.561 4.561 6 H 0.088 0.912 7 C -0.195 4.195 8 N -0.575 5.575 9 Si 0.796 3.204 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.184 1.184 13 C 0.032 3.968 14 C -0.249 4.249 15 C -0.053 4.053 16 N -0.222 5.222 17 C -0.012 4.012 18 C -0.122 4.122 19 C -0.099 4.099 20 C -0.151 4.151 21 C -0.153 4.153 22 C -0.098 4.098 23 H 0.096 0.904 24 H 0.061 0.939 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.040 0.960 28 H 0.010 0.990 29 H -0.013 1.013 30 H 0.074 0.926 31 H 0.138 0.862 32 H 0.194 0.806 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.119 0.881 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.487 4.529 6.264 16.420 hybrid contribution 1.901 -1.421 -0.872 2.529 sum -12.586 3.108 5.393 14.041 Atomic orbital electron populations 1.21683 0.93225 1.02239 1.01640 1.22112 0.96745 0.87226 1.00589 1.59662 1.19257 1.17617 1.25935 1.19313 0.81261 0.94013 0.95598 1.21397 0.93120 1.44017 0.97546 0.91232 1.25936 0.95496 0.95332 1.02759 1.70100 0.99510 1.49110 1.38773 0.85338 0.77601 0.78677 0.78752 1.19912 1.20898 1.18422 1.19637 0.93608 0.94167 0.89406 1.22767 1.03375 1.03482 0.95285 1.22740 0.93919 0.91041 0.97608 1.67646 1.09556 1.12995 1.32028 1.21509 0.95821 0.96690 0.87223 1.20630 0.98754 0.95488 0.97369 1.20211 0.97214 0.99849 0.92675 1.21603 0.96358 0.96898 1.00253 1.21587 1.02262 0.97965 0.93480 1.20413 0.97551 0.92507 0.99297 0.90431 0.93866 0.91849 0.90654 0.95958 0.98990 1.01317 0.92621 0.86239 0.80576 0.90625 0.92561 0.90942 0.89693 0.88064 0.92648 0.89529 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 9.58 71.99 0.69 -3.24 16 2 C 0.06 2.30 5.45 86.31 0.47 2.77 16 3 N -0.50 -21.97 3.51 -698.63 -2.45 -24.42 16 4 C 0.22 12.00 4.31 85.56 0.37 12.36 16 5 C -0.52 -29.19 8.31 25.60 0.21 -28.98 16 6 H 0.07 3.76 7.23 -2.91 -0.02 3.73 16 7 C 0.00 0.17 5.46 84.66 0.46 0.63 16 8 N -0.93 -56.32 13.29 21.45 0.28 -56.04 16 9 Si 0.97 43.69 29.54 68.60 2.03 45.71 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 13 C 0.13 5.38 3.71 38.64 0.14 5.52 16 14 C -0.23 -8.60 8.62 22.44 0.19 -8.40 16 15 C 0.11 3.49 11.18 84.64 0.95 4.43 16 16 N -0.51 -17.09 10.19 -184.30 -1.88 -18.97 16 17 C 0.12 3.89 6.62 42.19 0.28 4.17 16 18 C -0.12 -4.19 5.75 -19.74 -0.11 -4.30 16 19 C -0.06 -1.90 5.28 29.70 0.16 -1.75 16 20 C -0.11 -2.44 5.99 30.63 0.18 -2.26 16 21 C -0.12 -2.25 5.97 30.61 0.18 -2.07 16 22 C -0.06 -1.36 5.92 29.77 0.18 -1.19 16 23 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.04 1.31 7.52 -2.39 -0.02 1.29 16 25 H 0.06 1.88 7.71 -2.39 -0.02 1.86 16 26 H 0.08 3.14 6.60 -2.38 -0.02 3.12 16 27 H 0.02 0.86 7.12 -2.39 -0.02 0.84 16 28 H -0.01 -0.49 8.06 -2.39 -0.02 -0.51 16 29 H -0.03 -1.79 7.54 -2.38 -0.02 -1.81 16 30 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 31 H 0.12 4.63 7.27 -2.91 -0.02 4.61 16 32 H 0.18 4.57 8.06 -2.91 -0.02 4.55 16 33 H 0.08 2.45 6.95 -2.39 -0.02 2.44 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 1.42 8.10 -2.39 -0.02 1.41 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 39 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -65.40 317.40 3.34 -62.06 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 1.01 Total: 13.95 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 4.35 Total: -22.30 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -4.04 Total: -99.43 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -65.40 3.34 -62.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709091064.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.360 kcal (2) G-P(sol) polarization free energy of solvation -65.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds