Wall clock time and date at job start Mon Mar 30 2020 06:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47314 * 2 1 4 4 C 1.53002 * 109.46650 * 120.00195 * 2 1 3 5 5 N 1.46909 * 109.47109 * 294.95778 * 4 2 1 6 6 C 1.46899 * 110.99918 * 182.93563 * 5 4 2 7 7 C 1.53002 * 109.46918 * 177.06705 * 6 5 4 8 8 C 1.50696 * 115.55272 * 64.84861 * 7 6 5 9 9 H 1.07997 * 120.00044 * 265.29824 * 8 7 6 10 10 C 1.37877 * 119.99914 * 85.29453 * 8 7 6 11 11 N 1.31513 * 120.00042 * 1.44577 * 10 8 7 12 12 Si 1.86800 * 119.99964 * 181.43715 * 10 8 7 13 13 H 1.48504 * 109.47233 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.47241 * 120.00317 * 12 10 8 15 15 H 1.48506 * 109.47001 * 240.00392 * 12 10 8 16 16 C 1.53006 * 117.49524 * 279.17904 * 7 6 5 17 17 C 1.53002 * 117.49721 * 210.52324 * 7 6 5 18 18 C 1.50699 * 109.47065 * 239.99460 * 2 1 3 19 19 C 1.38224 * 119.62218 * 324.73365 * 18 2 1 20 20 C 1.38624 * 119.16313 * 179.75071 * 19 18 2 21 21 C 1.38670 * 118.41934 * 0.50817 * 20 19 18 22 22 C 1.38186 * 119.16488 * 359.73181 * 21 20 19 23 23 N 1.31855 * 119.61522 * 145.00079 * 18 2 1 24 24 H 1.08996 * 109.47504 * 186.08805 * 1 2 3 25 25 H 1.08999 * 109.46576 * 66.08826 * 1 2 3 26 26 H 1.09004 * 109.46920 * 306.09466 * 1 2 3 27 27 H 1.08999 * 109.47328 * 54.95654 * 4 2 1 28 28 H 1.09001 * 109.47292 * 174.96056 * 4 2 1 29 29 H 1.00897 * 110.99912 * 306.88952 * 5 4 2 30 30 H 1.09003 * 109.47039 * 297.06065 * 6 5 4 31 31 H 1.08994 * 109.47392 * 57.06407 * 6 5 4 32 32 H 0.96999 * 119.99622 * 185.01605 * 11 10 8 33 33 H 1.08999 * 117.49945 * 359.97438 * 16 7 6 34 34 H 1.09001 * 117.49567 * 145.02348 * 16 7 6 35 35 H 1.09003 * 117.49586 * 214.97724 * 17 7 6 36 36 H 1.09003 * 117.49671 * 359.97107 * 17 7 6 37 37 H 1.08002 * 120.41793 * 359.97438 * 19 18 2 38 38 H 1.08004 * 120.79357 * 180.21685 * 20 19 18 39 39 H 1.07997 * 120.42219 * 179.70524 * 21 20 19 40 40 H 1.07996 * 119.62102 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6521 0.0379 2.4457 6 6 2.1851 -0.5889 3.6626 7 6 1.8235 0.2676 4.8778 8 6 0.3515 0.3756 5.1820 9 1 -0.2182 1.2114 4.8037 10 6 -0.2679 -0.5928 5.9433 11 7 0.4315 -1.5956 6.4278 12 14 -2.1006 -0.4802 6.2869 13 1 -2.6532 0.7334 5.6333 14 1 -2.7803 -1.6852 5.7474 15 1 -2.3255 -0.3996 7.7526 16 6 2.6957 1.4917 5.1640 17 6 2.7909 0.2565 6.0630 18 6 2.0324 -0.7105 -1.2304 19 6 1.3351 -1.7970 -1.7244 20 6 1.8029 -2.4402 -2.8598 21 6 2.9655 -1.9712 -3.4524 22 6 3.6117 -0.8824 -2.8987 23 7 3.1349 -0.2919 -1.8201 24 1 -0.3634 -1.0218 0.1090 25 1 -0.3632 0.4166 -0.9395 26 1 -0.3633 0.6054 0.8304 27 1 1.6047 -1.7196 1.2956 28 1 3.1262 -0.8002 1.2054 29 1 1.9480 0.9999 2.3751 30 1 1.7540 -1.5834 3.7778 31 1 3.2693 -0.6697 3.5848 32 1 -0.0154 -2.3146 6.9013 33 1 3.5273 1.6865 4.4869 34 1 2.2048 2.3749 5.5728 35 1 2.3626 0.3276 7.0629 36 1 3.6848 -0.3615 5.9773 37 1 0.4353 -2.1381 -1.2342 38 1 1.2769 -3.2895 -3.2704 39 1 3.3614 -2.4510 -4.3352 40 1 4.5179 -0.5113 -3.3539 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709576832.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:12 Heat of formation + Delta-G solvation = 51.334262 kcal Electronic energy + Delta-G solvation = -18986.116399 eV Core-core repulsion = 16187.124932 eV Total energy + Delta-G solvation = -2798.991467 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.34929 -37.23355 -35.80199 -32.82524 -32.51165 -31.75402 -29.61425 -26.50759 -25.32076 -24.23351 -23.44536 -22.52895 -20.97469 -20.26269 -18.92176 -16.96057 -16.38378 -16.07511 -15.37321 -14.91787 -14.50591 -14.39936 -14.20605 -13.81135 -13.32869 -13.21380 -12.93374 -12.73633 -12.14280 -11.83148 -11.68977 -11.38758 -11.05124 -10.93198 -10.82559 -10.65731 -10.61276 -10.37457 -10.10555 -9.93395 -9.46486 -9.31874 -8.97525 -8.83758 -8.29679 -7.99746 -7.50432 -5.89925 -3.93047 1.04315 1.21081 3.36300 3.44402 3.49211 3.72554 4.18074 4.51745 4.63851 4.73230 4.97549 5.04620 5.08355 5.22105 5.37372 5.39588 5.45491 5.56884 5.60354 5.83522 5.95329 6.01161 6.07012 6.09510 6.20300 6.24668 6.40572 6.47043 6.55534 6.60747 6.66879 6.68294 6.80022 6.95627 7.20203 7.56321 7.61500 7.97135 7.99278 8.01947 8.21504 8.59890 9.06556 9.70313 11.19271 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025508 B = 0.004438 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.415127 B = 6307.366490 C = 6907.129883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.041 4.041 3 H 0.086 0.914 4 C 0.073 3.927 5 N -0.665 5.665 6 C 0.109 3.891 7 C 0.047 3.953 8 C -0.466 4.466 9 H 0.060 0.940 10 C 0.067 3.933 11 N -0.887 5.887 12 Si 0.888 3.112 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.288 1.288 16 C -0.217 4.217 17 C -0.153 4.153 18 C 0.145 3.855 19 C -0.167 4.167 20 C -0.076 4.076 21 C -0.186 4.186 22 C 0.098 3.902 23 N -0.485 5.485 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.019 0.981 29 H 0.332 0.668 30 H 0.072 0.928 31 H -0.005 1.005 32 H 0.256 0.744 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.493 -1.043 -17.179 17.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.061 4.061 3 H 0.105 0.895 4 C -0.057 4.057 5 N -0.295 5.295 6 C -0.020 4.020 7 C 0.047 3.953 8 C -0.504 4.504 9 H 0.078 0.922 10 C -0.135 4.135 11 N -0.526 5.526 12 Si 0.716 3.284 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.214 1.214 16 C -0.255 4.255 17 C -0.191 4.191 18 C 0.007 3.993 19 C -0.186 4.186 20 C -0.102 4.102 21 C -0.206 4.206 22 C -0.059 4.059 23 N -0.194 5.194 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.037 0.963 29 H 0.150 0.850 30 H 0.091 0.909 31 H 0.013 0.987 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.308 -0.774 -16.609 16.953 hybrid contribution -0.330 -0.759 -0.308 0.883 sum 2.978 -1.533 -16.917 17.246 Atomic orbital electron populations 1.21779 0.93000 1.02672 1.01823 1.20126 0.96778 0.99474 0.89720 0.89523 1.21889 0.96690 0.97846 0.89311 1.60342 1.63655 1.05043 1.00493 1.21527 0.92685 0.99174 0.88620 1.18863 0.92612 0.92470 0.91394 1.20352 0.91520 1.08551 1.30009 0.92226 1.24937 0.97518 0.95924 0.95091 1.70015 1.34567 1.10351 1.37648 0.86607 0.86201 0.77969 0.77605 1.19761 1.21220 1.21422 1.23006 1.03275 0.93815 1.05369 1.22496 1.00540 0.98808 0.97306 1.21398 0.89998 0.92546 0.95333 1.22091 1.02052 0.97117 0.97370 1.21596 0.95331 0.98607 0.94691 1.22091 0.97318 0.99117 1.02054 1.22735 0.98841 0.92494 0.91870 1.67535 1.12303 1.30540 1.08992 0.92503 0.93684 0.89984 0.91382 0.96264 0.85047 0.90935 0.98710 0.93415 0.92241 0.90533 0.89835 0.92307 0.84352 0.85014 0.85128 0.83025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.26 37.16 0.31 -1.51 16 2 C -0.04 -0.59 2.82 -91.77 -0.26 -0.85 16 3 H 0.09 1.27 8.13 -51.93 -0.42 0.85 16 4 C 0.07 1.21 5.07 -3.82 -0.02 1.19 16 5 N -0.67 -12.84 6.01 -113.77 -0.68 -13.53 16 6 C 0.11 2.43 5.52 -3.82 -0.02 2.41 16 7 C 0.05 1.16 1.53 -155.66 -0.24 0.92 16 8 C -0.47 -12.65 8.74 -34.44 -0.30 -12.95 16 9 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 10 C 0.07 1.83 5.42 -17.82 -0.10 1.74 16 11 N -0.89 -25.31 12.71 55.43 0.70 -24.60 16 12 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 13 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 C -0.22 -4.77 9.96 -26.69 -0.27 -5.04 16 17 C -0.15 -3.68 9.21 -26.69 -0.25 -3.92 16 18 C 0.15 1.99 5.78 -82.59 -0.48 1.51 16 19 C -0.17 -1.96 9.18 -39.44 -0.36 -2.32 16 20 C -0.08 -0.75 10.18 -39.28 -0.40 -1.15 16 21 C -0.19 -1.75 10.11 -39.44 -0.40 -2.15 16 22 C 0.10 1.08 11.18 -17.55 -0.20 0.89 16 23 N -0.48 -6.81 10.27 -9.47 -0.10 -6.90 16 24 H 0.06 0.74 6.84 -51.93 -0.35 0.38 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.08 1.23 7.93 -51.93 -0.41 0.82 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.33 6.16 8.65 -39.29 -0.34 5.83 16 30 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 31 H -0.01 -0.11 8.09 -51.93 -0.42 -0.53 16 32 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 35 H 0.08 2.15 8.14 -51.93 -0.42 1.73 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.14 1.47 6.47 -52.49 -0.34 1.13 16 38 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 39 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 40 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 334.35 15.07 5.04 5.04 Total: -1.00 -29.51 334.35 -9.52 -39.03 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.48 Total: 5.81 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -2.97 Total: -21.24 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: -0.08 Total: -45.03 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.51 -9.52 -39.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709576832.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.366 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds