Wall clock time and date at job start Mon Mar 30 2020 06:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47314 * 2 1 4 4 C 1.53002 * 109.46650 * 120.00195 * 2 1 3 5 5 N 1.46909 * 109.47109 * 294.95778 * 4 2 1 6 6 C 1.46899 * 110.99918 * 182.93563 * 5 4 2 7 7 C 1.53002 * 109.46918 * 177.06705 * 6 5 4 8 8 C 1.50696 * 115.55272 * 64.84861 * 7 6 5 9 9 H 1.07997 * 120.00044 * 265.29824 * 8 7 6 10 10 C 1.37877 * 119.99914 * 85.29453 * 8 7 6 11 11 N 1.31513 * 120.00042 * 1.44577 * 10 8 7 12 12 Si 1.86800 * 119.99964 * 181.43715 * 10 8 7 13 13 H 1.48504 * 109.47233 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.47241 * 120.00317 * 12 10 8 15 15 H 1.48506 * 109.47001 * 240.00392 * 12 10 8 16 16 C 1.53006 * 117.49524 * 279.17904 * 7 6 5 17 17 C 1.53002 * 117.49721 * 210.52324 * 7 6 5 18 18 C 1.50699 * 109.47065 * 239.99460 * 2 1 3 19 19 C 1.38224 * 119.62218 * 324.73365 * 18 2 1 20 20 C 1.38624 * 119.16313 * 179.75071 * 19 18 2 21 21 C 1.38670 * 118.41934 * 0.50817 * 20 19 18 22 22 C 1.38186 * 119.16488 * 359.73181 * 21 20 19 23 23 N 1.31855 * 119.61522 * 145.00079 * 18 2 1 24 24 H 1.08996 * 109.47504 * 186.08805 * 1 2 3 25 25 H 1.08999 * 109.46576 * 66.08826 * 1 2 3 26 26 H 1.09004 * 109.46920 * 306.09466 * 1 2 3 27 27 H 1.08999 * 109.47328 * 54.95654 * 4 2 1 28 28 H 1.09001 * 109.47292 * 174.96056 * 4 2 1 29 29 H 1.00897 * 110.99912 * 306.88952 * 5 4 2 30 30 H 1.09003 * 109.47039 * 297.06065 * 6 5 4 31 31 H 1.08994 * 109.47392 * 57.06407 * 6 5 4 32 32 H 0.96999 * 119.99622 * 185.01605 * 11 10 8 33 33 H 1.08999 * 117.49945 * 359.97438 * 16 7 6 34 34 H 1.09001 * 117.49567 * 145.02348 * 16 7 6 35 35 H 1.09003 * 117.49586 * 214.97724 * 17 7 6 36 36 H 1.09003 * 117.49671 * 359.97107 * 17 7 6 37 37 H 1.08002 * 120.41793 * 359.97438 * 19 18 2 38 38 H 1.08004 * 120.79357 * 180.21685 * 20 19 18 39 39 H 1.07997 * 120.42219 * 179.70524 * 21 20 19 40 40 H 1.07996 * 119.62102 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6521 0.0379 2.4457 6 6 2.1851 -0.5889 3.6626 7 6 1.8235 0.2676 4.8778 8 6 0.3515 0.3756 5.1820 9 1 -0.2182 1.2114 4.8037 10 6 -0.2679 -0.5928 5.9433 11 7 0.4315 -1.5956 6.4278 12 14 -2.1006 -0.4802 6.2869 13 1 -2.6532 0.7334 5.6333 14 1 -2.7803 -1.6852 5.7474 15 1 -2.3255 -0.3996 7.7526 16 6 2.6957 1.4917 5.1640 17 6 2.7909 0.2565 6.0630 18 6 2.0324 -0.7105 -1.2304 19 6 1.3351 -1.7970 -1.7244 20 6 1.8029 -2.4402 -2.8598 21 6 2.9655 -1.9712 -3.4524 22 6 3.6117 -0.8824 -2.8987 23 7 3.1349 -0.2919 -1.8201 24 1 -0.3634 -1.0218 0.1090 25 1 -0.3632 0.4166 -0.9395 26 1 -0.3633 0.6054 0.8304 27 1 1.6047 -1.7196 1.2956 28 1 3.1262 -0.8002 1.2054 29 1 1.9480 0.9999 2.3751 30 1 1.7540 -1.5834 3.7778 31 1 3.2693 -0.6697 3.5848 32 1 -0.0154 -2.3146 6.9013 33 1 3.5273 1.6865 4.4869 34 1 2.2048 2.3749 5.5728 35 1 2.3626 0.3276 7.0629 36 1 3.6848 -0.3615 5.9773 37 1 0.4353 -2.1381 -1.2342 38 1 1.2769 -3.2895 -3.2704 39 1 3.3614 -2.4510 -4.3352 40 1 4.5179 -0.5113 -3.3539 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709576832.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:11 Heat of formation + Delta-G solvation = 34.322991 kcal Electronic energy + Delta-G solvation = -18986.854063 eV Core-core repulsion = 16187.124932 eV Total energy + Delta-G solvation = -2799.729131 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.23086 -38.94004 -37.20711 -34.23765 -33.77671 -33.35852 -30.60047 -28.09728 -27.17645 -25.53433 -24.32397 -23.82066 -22.80317 -21.45425 -20.79208 -18.12651 -17.66902 -17.28947 -16.74103 -16.30380 -16.22067 -15.75791 -15.49651 -15.12280 -14.78122 -14.50264 -14.22525 -13.82864 -13.68064 -13.26817 -13.13716 -12.83555 -12.76484 -12.66885 -12.33070 -12.23037 -12.08765 -11.96482 -11.81823 -11.21640 -10.83592 -10.77566 -10.34452 -10.31122 -9.94385 -9.83084 -9.09209 -8.00193 -6.08233 0.19978 0.40303 1.43953 1.46838 1.57611 2.50507 2.84216 3.15729 3.28950 3.47605 3.67449 3.89561 4.03732 4.09403 4.18495 4.27129 4.30924 4.39300 4.41600 4.56036 4.69695 4.72233 4.75160 4.83084 4.87316 4.94571 4.99794 5.06069 5.08547 5.15973 5.29239 5.30505 5.38176 5.51787 5.66870 5.73671 5.84093 5.89265 6.31836 6.51864 6.71451 6.95739 7.10430 7.57550 9.08516 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025508 B = 0.004438 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.415127 B = 6307.366490 C = 6907.129883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.031 4.031 3 H 0.079 0.921 4 C 0.082 3.918 5 N -0.669 5.669 6 C 0.124 3.876 7 C 0.023 3.977 8 C -0.476 4.476 9 H 0.051 0.949 10 C 0.021 3.979 11 N -0.915 5.915 12 Si 0.946 3.054 13 H -0.268 1.268 14 H -0.284 1.284 15 H -0.287 1.287 16 C -0.189 4.189 17 C -0.162 4.162 18 C 0.121 3.879 19 C -0.176 4.176 20 C -0.077 4.077 21 C -0.175 4.175 22 C 0.083 3.917 23 N -0.517 5.517 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.013 0.987 29 H 0.338 0.662 30 H 0.040 0.960 31 H 0.002 0.998 32 H 0.255 0.745 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.144 0.856 38 H 0.163 0.837 39 H 0.166 0.834 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.514 -1.205 -19.340 19.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.051 4.051 3 H 0.097 0.903 4 C -0.048 4.048 5 N -0.299 5.299 6 C -0.006 4.006 7 C 0.022 3.978 8 C -0.514 4.514 9 H 0.069 0.931 10 C -0.178 4.178 11 N -0.555 5.555 12 Si 0.773 3.227 13 H -0.192 1.192 14 H -0.210 1.210 15 H -0.213 1.213 16 C -0.226 4.226 17 C -0.200 4.200 18 C -0.017 4.017 19 C -0.196 4.196 20 C -0.103 4.103 21 C -0.195 4.195 22 C -0.074 4.074 23 N -0.227 5.227 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.031 0.969 29 H 0.156 0.844 30 H 0.059 0.941 31 H 0.020 0.980 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.162 0.838 38 H 0.180 0.820 39 H 0.184 0.816 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.326 -0.920 -18.778 19.093 hybrid contribution -0.276 -0.718 0.280 0.819 sum 3.050 -1.638 -18.498 18.819 Atomic orbital electron populations 1.21697 0.92504 1.02541 1.01817 1.19943 0.97081 0.98824 0.89253 0.90270 1.21833 0.96239 0.97482 0.89283 1.60238 1.63755 1.05466 1.00467 1.21182 0.92798 0.97294 0.89290 1.18970 0.91815 0.94703 0.92312 1.20577 0.93036 1.08124 1.29669 0.93125 1.25589 1.01236 0.95771 0.95160 1.70120 1.35951 1.10953 1.38475 0.85691 0.81759 0.77984 0.77272 1.19245 1.20976 1.21318 1.22985 1.02884 0.92650 1.04105 1.22398 1.00756 1.00726 0.96138 1.21240 0.90985 0.93799 0.95630 1.22234 1.02274 0.96823 0.98274 1.22010 0.95493 0.99004 0.93761 1.22495 0.96524 0.98002 1.02466 1.23241 0.99776 0.93076 0.91297 1.67458 1.12838 1.31915 1.10491 0.92238 0.92099 0.91892 0.92091 0.96892 0.84411 0.94148 0.97971 0.93566 0.89564 0.90431 0.92294 0.91397 0.83798 0.81988 0.81642 0.80739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 8.26 71.98 0.59 -2.80 16 2 C -0.03 -0.89 2.82 -11.54 -0.03 -0.92 16 3 H 0.08 2.33 8.13 -2.39 -0.02 2.31 16 4 C 0.08 2.72 5.07 86.30 0.44 3.15 16 5 N -0.67 -25.94 6.01 -513.86 -3.09 -29.03 16 6 C 0.12 5.60 5.52 86.30 0.48 6.07 16 7 C 0.02 1.11 1.53 -52.93 -0.08 1.03 16 8 C -0.48 -26.04 8.74 25.60 0.22 -25.81 16 9 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 10 C 0.02 1.16 5.42 84.65 0.46 1.62 16 11 N -0.92 -53.09 12.71 21.45 0.27 -52.82 16 12 Si 0.95 44.31 29.54 68.60 2.03 46.33 16 13 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 14 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 15 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 16 C -0.19 -8.10 9.96 30.62 0.30 -7.79 16 17 C -0.16 -7.79 9.21 30.62 0.28 -7.51 16 18 C 0.12 3.22 5.78 42.55 0.25 3.46 16 19 C -0.18 -3.87 9.18 22.36 0.21 -3.67 16 20 C -0.08 -1.29 10.18 22.47 0.23 -1.06 16 21 C -0.18 -2.72 10.11 22.36 0.23 -2.50 16 22 C 0.08 1.66 11.18 84.67 0.95 2.61 16 23 N -0.52 -14.03 10.27 -183.89 -1.89 -15.92 16 24 H 0.06 1.52 6.84 -2.39 -0.02 1.50 16 25 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.90 7.93 -2.38 -0.02 1.88 16 27 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.34 12.44 8.65 -89.70 -0.78 11.67 16 30 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.00 0.10 8.09 -2.39 -0.02 0.08 16 32 H 0.26 14.22 8.32 -92.71 -0.77 13.45 16 33 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 34 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 35 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.14 2.87 6.47 -2.91 -0.02 2.85 16 38 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 39 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 40 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -63.63 334.35 2.07 -61.56 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.23 Total: 23.99 kcal Atomic # 6 Polarization: -38.63 SS G_CDS: 4.52 Total: -34.11 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -4.70 Total: -97.77 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -63.63 2.07 -61.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709576832.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.885 kcal (2) G-P(sol) polarization free energy of solvation -63.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds