Wall clock time and date at job start Mon Mar 30 2020 06:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.47401 * 2 1 4 4 C 1.52997 * 109.47437 * 239.99756 * 2 1 3 5 5 C 1.50701 * 109.47333 * 177.55628 * 4 2 1 6 6 H 1.07995 * 120.00055 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99773 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99869 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00363 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47339 * 90.00023 * 9 7 5 11 11 H 1.48503 * 109.47358 * 210.00169 * 9 7 5 12 12 H 1.48500 * 109.47221 * 330.00076 * 9 7 5 13 13 N 1.46906 * 109.47455 * 119.99864 * 2 1 3 14 14 C 1.46719 * 110.99973 * 265.46982 * 13 2 1 15 15 C 1.53378 * 108.26521 * 75.28139 * 14 13 2 16 16 N 1.46711 * 108.27408 * 66.73693 * 15 14 13 17 17 C 1.46900 * 110.99952 * 75.37300 * 16 15 14 18 18 C 1.39926 * 112.12858 * 310.59127 * 16 15 14 19 19 C 1.39224 * 117.93071 * 197.76331 * 18 16 15 20 20 C 1.38043 * 120.39717 * 180.34248 * 19 18 16 21 21 C 1.38253 * 120.02926 * 0.07934 * 20 19 18 22 22 C 1.38046 * 120.01849 * 359.87939 * 21 20 19 23 23 C 1.38952 * 122.49128 * 18.29261 * 18 16 15 24 24 H 1.09000 * 109.47020 * 305.59073 * 1 2 3 25 25 H 1.08999 * 109.46697 * 65.58829 * 1 2 3 26 26 H 1.08996 * 109.46682 * 185.58914 * 1 2 3 27 27 H 1.08993 * 109.47398 * 297.55868 * 4 2 1 28 28 H 1.09008 * 109.47142 * 57.55922 * 4 2 1 29 29 H 0.97005 * 120.00462 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.70363 * 315.58886 * 14 13 2 31 31 H 1.08993 * 109.73914 * 194.99813 * 14 13 2 32 32 H 1.08995 * 109.70124 * 307.04276 * 15 14 13 33 33 H 1.08992 * 109.70413 * 186.43385 * 15 14 13 34 34 H 1.08997 * 109.47549 * 298.53852 * 17 16 15 35 35 H 1.09004 * 109.47146 * 58.54025 * 17 16 15 36 36 H 1.08996 * 109.47238 * 178.53290 * 17 16 15 37 37 H 1.07994 * 119.80139 * 0.37505 * 19 18 16 38 38 H 1.08002 * 119.98668 * 180.09223 * 20 19 18 39 39 H 1.07991 * 119.99508 * 179.90706 * 21 20 19 40 40 H 1.08004 * 119.80310 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5458 -0.6690 -1.2798 6 1 4.0851 -0.1708 -0.4878 7 6 4.2350 -1.2564 -2.3196 8 7 5.5491 -1.2112 -2.3461 9 14 3.3023 -2.1175 -3.6899 10 1 2.9983 -1.1442 -4.7695 11 1 4.1329 -3.2202 -4.2371 12 1 2.0341 -2.6728 -3.1526 13 7 2.0197 -0.6925 1.1995 14 6 2.2970 0.2603 2.2802 15 6 0.9586 0.7138 2.8764 16 7 0.3358 -0.4381 3.5381 17 6 0.9949 -0.7297 4.8181 18 6 0.3144 -1.5701 2.7158 19 6 -0.5598 -2.6013 3.0486 20 6 -0.6177 -3.7443 2.2768 21 6 0.1964 -3.8715 1.1666 22 6 1.0660 -2.8543 0.8277 23 6 1.1340 -1.6987 1.6012 24 1 -0.3633 0.5981 0.8357 25 1 -0.3633 0.4247 -0.9358 26 1 -0.3632 -1.0228 0.1001 27 1 1.7130 -1.7607 -1.2276 28 1 1.6414 -0.2333 -2.1387 29 1 6.0340 -1.6241 -3.0778 30 1 2.8328 1.1219 1.8821 31 1 2.8981 -0.2221 3.0510 32 1 0.3071 1.0778 2.0821 33 1 1.1304 1.5069 3.6040 34 1 2.0407 -0.9797 4.6397 35 1 0.9358 0.1457 5.4649 36 1 0.4972 -1.5714 5.2996 37 1 -1.1969 -2.5062 3.9154 38 1 -1.2994 -4.5396 2.5401 39 1 0.1518 -4.7666 0.5640 40 1 1.7007 -2.9575 -0.0400 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709979892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:24 Heat of formation + Delta-G solvation = 59.261023 kcal Electronic energy + Delta-G solvation = -20623.403772 eV Core-core repulsion = 17824.756036 eV Total energy + Delta-G solvation = -2798.647737 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -41.03212 -36.91185 -36.46123 -32.88254 -31.23351 -30.20928 -29.80839 -28.01091 -27.45074 -24.71330 -23.29459 -22.96562 -21.50375 -20.39705 -18.88890 -16.80991 -16.55954 -16.04000 -15.94769 -15.03643 -14.41960 -14.32234 -14.03710 -14.02200 -13.24216 -13.15411 -12.80970 -12.58013 -12.28993 -12.19338 -11.99980 -11.93936 -11.62558 -11.49445 -11.25373 -10.90458 -10.76083 -10.52907 -10.15374 -9.90785 -9.65886 -9.33903 -9.06379 -8.64894 -8.45167 -7.70944 -7.33374 -5.94514 -3.88940 1.67184 1.77123 3.33463 3.41898 3.44157 3.83015 4.10133 4.30359 4.51423 4.96872 5.08252 5.17210 5.27136 5.34996 5.39848 5.44369 5.48813 5.59384 5.65886 5.66996 5.77596 5.80791 5.84791 5.91799 5.98329 6.19597 6.27412 6.38466 6.51437 6.57277 6.65210 6.72041 6.89890 6.97682 6.99794 7.17488 7.35755 7.47096 7.67356 7.85795 7.98002 8.66696 9.15033 9.68153 11.19472 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023842 B = 0.007370 C = 0.006428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.109732 B = 3798.075405 C = 4354.822785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.102 3.898 3 H 0.076 0.924 4 C -0.010 4.010 5 C -0.492 4.492 6 H 0.075 0.925 7 C 0.063 3.937 8 N -0.907 5.907 9 Si 0.871 3.129 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.267 1.267 13 N -0.467 5.467 14 C 0.021 3.979 15 C 0.005 3.995 16 N -0.493 5.493 17 C 0.028 3.972 18 C 0.049 3.951 19 C -0.110 4.110 20 C -0.136 4.136 21 C -0.124 4.124 22 C -0.107 4.107 23 C 0.102 3.898 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.025 0.975 28 H 0.015 0.985 29 H 0.260 0.740 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.035 0.965 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.059 -0.062 11.446 16.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.003 4.003 3 H 0.094 0.906 4 C -0.047 4.047 5 C -0.531 4.531 6 H 0.093 0.907 7 C -0.137 4.137 8 N -0.547 5.547 9 Si 0.699 3.301 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.191 1.191 13 N -0.181 5.181 14 C -0.108 4.108 15 C -0.124 4.124 16 N -0.209 5.209 17 C -0.118 4.118 18 C -0.050 4.050 19 C -0.130 4.130 20 C -0.155 4.155 21 C -0.143 4.143 22 C -0.127 4.127 23 C 0.002 3.998 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.043 0.957 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.888 -0.107 11.326 16.420 hybrid contribution -0.179 -0.318 -0.756 0.840 sum -12.067 -0.424 10.569 16.047 Atomic orbital electron populations 1.22829 0.98033 1.02464 1.01391 1.21827 0.90972 0.97359 0.90129 0.90609 1.19818 0.97929 0.95864 0.91108 1.20991 0.89050 1.34970 1.08063 0.90678 1.24990 0.94658 0.96174 0.97862 1.69907 1.06234 1.46001 1.32580 0.86916 0.80358 0.79822 0.82968 1.20551 1.21549 1.19127 1.58981 1.42065 1.11926 1.05146 1.22891 0.96780 0.96730 0.94400 1.23206 0.96394 0.92884 0.99920 1.59224 1.53094 1.04058 1.04554 1.22486 0.97381 1.01891 0.90074 1.18847 0.96489 0.91801 0.97853 1.20699 0.98509 0.93292 1.00543 1.20826 1.00681 0.97750 0.96267 1.20985 0.97101 0.98785 0.97454 1.21372 0.99095 0.91740 1.00445 1.18873 0.90310 0.94181 0.96456 0.92841 0.92318 0.91859 0.95688 0.96711 0.93017 0.89191 0.90641 0.88843 0.89979 0.94687 0.91189 0.91171 0.86492 0.86606 0.86372 0.84175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.19 8.06 37.16 0.30 -2.89 16 2 C 0.10 1.99 2.05 -67.71 -0.14 1.85 16 3 H 0.08 1.47 7.41 -51.92 -0.38 1.08 16 4 C -0.01 -0.23 3.50 -27.88 -0.10 -0.33 16 5 C -0.49 -13.74 9.33 -34.44 -0.32 -14.06 16 6 H 0.08 2.28 7.97 -52.49 -0.42 1.87 16 7 C 0.06 1.83 5.47 -17.82 -0.10 1.73 16 8 N -0.91 -28.09 13.96 55.43 0.77 -27.32 16 9 Si 0.87 21.72 27.47 -169.99 -4.67 17.05 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 N -0.47 -8.96 4.12 -163.29 -0.67 -9.63 16 14 C 0.02 0.34 5.81 -3.73 -0.02 0.32 16 15 C 0.00 0.06 5.70 -3.73 -0.02 0.04 16 16 N -0.49 -6.89 4.85 -178.69 -0.87 -7.75 16 17 C 0.03 0.32 9.25 60.06 0.56 0.88 16 18 C 0.05 0.77 4.88 -83.53 -0.41 0.36 16 19 C -0.11 -1.57 9.26 -39.29 -0.36 -1.93 16 20 C -0.14 -1.87 10.04 -39.65 -0.40 -2.26 16 21 C -0.12 -1.91 10.04 -39.65 -0.40 -2.31 16 22 C -0.11 -1.96 7.96 -39.28 -0.31 -2.27 16 23 C 0.10 1.84 3.33 -83.52 -0.28 1.56 16 24 H 0.05 0.83 5.09 -51.93 -0.26 0.56 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 1.12 5.82 -51.93 -0.30 0.82 16 27 H 0.03 0.60 4.30 -51.93 -0.22 0.37 16 28 H 0.01 0.34 7.57 -51.92 -0.39 -0.05 16 29 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.09 1.41 7.63 -51.93 -0.40 1.01 16 31 H 0.08 1.21 6.64 -51.93 -0.34 0.86 16 32 H 0.09 1.33 4.63 -51.93 -0.24 1.09 16 33 H 0.08 0.92 7.95 -51.93 -0.41 0.51 16 34 H 0.03 0.44 6.71 -51.93 -0.35 0.09 16 35 H 0.07 0.67 8.06 -51.93 -0.42 0.26 16 36 H 0.07 0.76 7.65 -51.93 -0.40 0.36 16 37 H 0.12 1.45 8.03 -52.49 -0.42 1.03 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 40 H 0.14 2.92 5.86 -52.48 -0.31 2.61 16 LS Contribution 299.72 15.07 4.52 4.52 Total: -1.00 -30.85 299.72 -8.63 -39.47 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.71 Total: 2.98 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -2.00 Total: -19.32 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: -0.77 Total: -44.70 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.85 -8.63 -39.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709979892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.736 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds