Wall clock time and date at job start Mon Mar 30 2020 06:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.47401 * 2 1 4 4 C 1.52997 * 109.47437 * 239.99756 * 2 1 3 5 5 C 1.50701 * 109.47333 * 177.55628 * 4 2 1 6 6 H 1.07995 * 120.00055 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99773 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99869 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00363 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47339 * 90.00023 * 9 7 5 11 11 H 1.48503 * 109.47358 * 210.00169 * 9 7 5 12 12 H 1.48500 * 109.47221 * 330.00076 * 9 7 5 13 13 N 1.46906 * 109.47455 * 119.99864 * 2 1 3 14 14 C 1.46719 * 110.99973 * 265.46982 * 13 2 1 15 15 C 1.53378 * 108.26521 * 75.28139 * 14 13 2 16 16 N 1.46711 * 108.27408 * 66.73693 * 15 14 13 17 17 C 1.46900 * 110.99952 * 75.37300 * 16 15 14 18 18 C 1.39926 * 112.12858 * 310.59127 * 16 15 14 19 19 C 1.39224 * 117.93071 * 197.76331 * 18 16 15 20 20 C 1.38043 * 120.39717 * 180.34248 * 19 18 16 21 21 C 1.38253 * 120.02926 * 0.07934 * 20 19 18 22 22 C 1.38046 * 120.01849 * 359.87939 * 21 20 19 23 23 C 1.38952 * 122.49128 * 18.29261 * 18 16 15 24 24 H 1.09000 * 109.47020 * 305.59073 * 1 2 3 25 25 H 1.08999 * 109.46697 * 65.58829 * 1 2 3 26 26 H 1.08996 * 109.46682 * 185.58914 * 1 2 3 27 27 H 1.08993 * 109.47398 * 297.55868 * 4 2 1 28 28 H 1.09008 * 109.47142 * 57.55922 * 4 2 1 29 29 H 0.97005 * 120.00462 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.70363 * 315.58886 * 14 13 2 31 31 H 1.08993 * 109.73914 * 194.99813 * 14 13 2 32 32 H 1.08995 * 109.70124 * 307.04276 * 15 14 13 33 33 H 1.08992 * 109.70413 * 186.43385 * 15 14 13 34 34 H 1.08997 * 109.47549 * 298.53852 * 17 16 15 35 35 H 1.09004 * 109.47146 * 58.54025 * 17 16 15 36 36 H 1.08996 * 109.47238 * 178.53290 * 17 16 15 37 37 H 1.07994 * 119.80139 * 0.37505 * 19 18 16 38 38 H 1.08002 * 119.98668 * 180.09223 * 20 19 18 39 39 H 1.07991 * 119.99508 * 179.90706 * 21 20 19 40 40 H 1.08004 * 119.80310 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5458 -0.6690 -1.2798 6 1 4.0851 -0.1708 -0.4878 7 6 4.2350 -1.2564 -2.3196 8 7 5.5491 -1.2112 -2.3461 9 14 3.3023 -2.1175 -3.6899 10 1 2.9983 -1.1442 -4.7695 11 1 4.1329 -3.2202 -4.2371 12 1 2.0341 -2.6728 -3.1526 13 7 2.0197 -0.6925 1.1995 14 6 2.2970 0.2603 2.2802 15 6 0.9586 0.7138 2.8764 16 7 0.3358 -0.4381 3.5381 17 6 0.9949 -0.7297 4.8181 18 6 0.3144 -1.5701 2.7158 19 6 -0.5598 -2.6013 3.0486 20 6 -0.6177 -3.7443 2.2768 21 6 0.1964 -3.8715 1.1666 22 6 1.0660 -2.8543 0.8277 23 6 1.1340 -1.6987 1.6012 24 1 -0.3633 0.5981 0.8357 25 1 -0.3633 0.4247 -0.9358 26 1 -0.3632 -1.0228 0.1001 27 1 1.7130 -1.7607 -1.2276 28 1 1.6414 -0.2333 -2.1387 29 1 6.0340 -1.6241 -3.0778 30 1 2.8328 1.1219 1.8821 31 1 2.8981 -0.2221 3.0510 32 1 0.3071 1.0778 2.0821 33 1 1.1304 1.5069 3.6040 34 1 2.0407 -0.9797 4.6397 35 1 0.9358 0.1457 5.4649 36 1 0.4972 -1.5714 5.2996 37 1 -1.1969 -2.5062 3.9154 38 1 -1.2994 -4.5396 2.5401 39 1 0.1518 -4.7666 0.5640 40 1 1.7007 -2.9575 -0.0400 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709979892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:19 Heat of formation + Delta-G solvation = 39.153168 kcal Electronic energy + Delta-G solvation = -20624.275714 eV Core-core repulsion = 17824.756036 eV Total energy + Delta-G solvation = -2799.519679 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 4.70 seconds Orbital eigenvalues (eV) -42.27152 -38.17379 -37.69543 -34.90534 -32.92505 -31.39427 -31.00534 -29.72985 -28.64486 -25.86360 -24.82244 -24.40983 -22.95192 -21.76822 -20.20738 -18.83787 -17.86495 -17.33334 -17.24358 -16.37263 -16.18679 -15.49649 -15.42086 -15.25346 -14.76327 -14.52514 -14.21623 -14.07920 -13.68929 -13.61991 -13.42502 -13.17835 -12.98793 -12.84684 -12.51703 -12.47601 -12.28583 -11.95784 -11.77371 -11.59545 -11.38707 -11.10516 -10.69118 -10.65084 -9.91297 -8.86021 -8.64184 -8.20407 -6.18918 0.49010 0.55503 1.33985 1.36307 1.47161 2.39365 2.68816 2.92420 3.02248 3.17793 3.79678 3.89398 4.02611 4.10564 4.21563 4.28680 4.31491 4.41284 4.50328 4.52760 4.60951 4.63614 4.65419 4.73075 4.83739 4.91272 4.98555 5.05374 5.11449 5.24874 5.27355 5.33877 5.43637 5.59162 5.69691 5.73443 5.88041 5.95040 6.23636 6.30978 6.44565 6.67311 6.87552 7.41457 8.97005 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023842 B = 0.007370 C = 0.006428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.109732 B = 3798.075405 C = 4354.822785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.108 3.892 3 H 0.069 0.931 4 C -0.007 4.007 5 C -0.488 4.488 6 H 0.034 0.966 7 C -0.001 4.001 8 N -0.957 5.957 9 Si 0.940 3.060 10 H -0.268 1.268 11 H -0.289 1.289 12 H -0.250 1.250 13 N -0.499 5.499 14 C 0.021 3.979 15 C 0.014 3.986 16 N -0.491 5.491 17 C 0.027 3.973 18 C 0.046 3.954 19 C -0.108 4.108 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.135 4.135 23 C 0.081 3.919 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.024 0.976 28 H 0.019 0.981 29 H 0.261 0.739 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.020 0.980 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.143 0.857 38 H 0.152 0.848 39 H 0.135 0.865 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.254 -0.582 12.750 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.002 3.998 3 H 0.087 0.913 4 C -0.044 4.044 5 C -0.527 4.527 6 H 0.052 0.948 7 C -0.195 4.195 8 N -0.600 5.600 9 Si 0.764 3.236 10 H -0.193 1.193 11 H -0.215 1.215 12 H -0.174 1.174 13 N -0.214 5.214 14 C -0.108 4.108 15 C -0.114 4.114 16 N -0.207 5.207 17 C -0.118 4.118 18 C -0.053 4.053 19 C -0.128 4.128 20 C -0.143 4.143 21 C -0.145 4.145 22 C -0.156 4.156 23 C -0.018 4.018 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.042 0.958 28 H 0.037 0.963 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.129 0.871 34 H 0.039 0.961 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.161 0.839 38 H 0.170 0.830 39 H 0.153 0.847 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.107 -0.620 12.653 19.715 hybrid contribution 0.859 -0.156 -1.038 1.357 sum -14.248 -0.775 11.614 18.398 Atomic orbital electron populations 1.22654 0.95573 1.02377 1.02613 1.21603 0.92818 0.96280 0.89070 0.91267 1.19762 0.94693 0.96484 0.93508 1.21227 0.91527 1.33472 1.06434 0.94786 1.25892 0.95467 0.97310 1.00880 1.70073 1.08192 1.47867 1.33862 0.85814 0.79419 0.78710 0.79625 1.19326 1.21513 1.17376 1.58826 1.43448 1.13142 1.05946 1.22882 0.98374 0.95916 0.93583 1.23142 0.94361 0.93514 1.00423 1.59344 1.53054 1.03419 1.04908 1.22585 0.96394 1.03589 0.89266 1.19023 0.96140 0.92894 0.97223 1.21054 0.97914 0.92679 1.01112 1.21205 0.99963 0.98379 0.94777 1.21201 0.96522 0.98466 0.98330 1.21240 1.00438 0.93555 1.00347 1.18931 0.91352 0.93766 0.97770 0.91123 0.91416 0.92612 0.95760 0.96303 0.93040 0.89882 0.91193 0.89333 0.87135 0.96149 0.88741 0.89999 0.83878 0.82991 0.84738 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.68 8.06 71.98 0.58 -5.10 16 2 C 0.11 4.26 2.05 44.91 0.09 4.35 16 3 H 0.07 2.75 7.41 -2.38 -0.02 2.73 16 4 C -0.01 -0.33 3.50 29.85 0.10 -0.22 16 5 C -0.49 -28.45 9.33 25.60 0.24 -28.21 16 6 H 0.03 2.20 7.97 -2.91 -0.02 2.18 16 7 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 8 N -0.96 -61.74 13.96 21.45 0.30 -61.44 16 9 Si 0.94 45.65 27.47 68.60 1.88 47.54 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 12 H -0.25 -11.36 6.54 99.48 0.65 -10.71 16 13 N -0.50 -19.58 4.12 -670.51 -2.76 -22.34 16 14 C 0.02 0.69 5.81 86.46 0.50 1.19 16 15 C 0.01 0.36 5.70 86.47 0.49 0.85 16 16 N -0.49 -12.38 4.85 -719.24 -3.49 -15.87 16 17 C 0.03 0.55 9.25 127.69 1.18 1.73 16 18 C 0.05 1.36 4.88 38.26 0.19 1.55 16 19 C -0.11 -2.68 9.26 22.46 0.21 -2.47 16 20 C -0.12 -2.97 10.04 22.23 0.22 -2.74 16 21 C -0.13 -3.67 10.04 22.23 0.22 -3.45 16 22 C -0.14 -5.02 7.96 22.46 0.18 -4.84 16 23 C 0.08 2.91 3.33 38.26 0.13 3.04 16 24 H 0.07 2.05 5.09 -2.39 -0.01 2.04 16 25 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.05 1.91 5.82 -2.39 -0.01 1.90 16 27 H 0.02 1.18 4.30 -2.39 -0.01 1.17 16 28 H 0.02 0.87 7.57 -2.38 -0.02 0.85 16 29 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 30 H 0.08 2.71 7.63 -2.39 -0.02 2.69 16 31 H 0.07 2.29 6.64 -2.39 -0.02 2.27 16 32 H 0.09 2.34 4.63 -2.39 -0.01 2.32 16 33 H 0.11 2.15 7.95 -2.39 -0.02 2.13 16 34 H 0.02 0.47 6.71 -2.39 -0.02 0.46 16 35 H 0.09 1.47 8.06 -2.39 -0.02 1.45 16 36 H 0.08 1.48 7.65 -2.39 -0.02 1.46 16 37 H 0.14 2.83 8.03 -2.91 -0.02 2.80 16 38 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 39 H 0.13 3.34 8.06 -2.92 -0.02 3.32 16 40 H 0.10 4.52 5.86 -2.91 -0.02 4.51 16 Total: -1.00 -69.53 299.72 1.71 -67.82 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.97 Total: 18.18 kcal Atomic # 6 Polarization: -38.69 SS G_CDS: 4.80 Total: -33.89 kcal Atomic # 7 Polarization: -93.70 SS G_CDS: -5.95 Total: -99.65 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.88 Total: 47.54 kcal Total: -69.53 1.71 -67.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709979892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.975 kcal (2) G-P(sol) polarization free energy of solvation -69.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.70 seconds