Wall clock time and date at job start Mon Mar 30 2020 06:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47680 * 2 1 4 4 C 1.52999 * 109.46797 * 120.00076 * 2 1 3 5 5 C 1.50706 * 109.46972 * 182.66245 * 4 2 1 6 6 H 1.08000 * 119.99990 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00060 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00202 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00169 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47098 * 60.00387 * 9 7 5 11 11 H 1.48494 * 109.47222 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47162 * 300.00554 * 9 7 5 13 13 N 1.46899 * 109.47011 * 239.99513 * 2 1 3 14 14 C 1.46715 * 111.00133 * 95.51287 * 13 2 1 15 15 C 1.53373 * 108.26345 * 284.57914 * 14 13 2 16 16 N 1.46720 * 108.24503 * 293.18734 * 15 14 13 17 17 C 1.46905 * 110.99980 * 284.67350 * 16 15 14 18 18 C 1.39929 * 112.11509 * 49.42519 * 16 15 14 19 19 C 1.39226 * 117.92621 * 162.36332 * 18 16 15 20 20 C 1.38039 * 120.39811 * 179.69350 * 19 18 16 21 21 C 1.38263 * 120.02499 * 359.97438 * 20 19 18 22 22 C 1.38041 * 120.01844 * 0.34669 * 21 20 19 23 23 C 1.38947 * 122.49550 * 342.24077 * 18 16 15 24 24 H 1.09007 * 109.47160 * 67.61276 * 1 2 3 25 25 H 1.08993 * 109.47648 * 187.61731 * 1 2 3 26 26 H 1.09001 * 109.46749 * 307.62025 * 1 2 3 27 27 H 1.09002 * 109.47325 * 302.65893 * 4 2 1 28 28 H 1.08995 * 109.47773 * 62.66600 * 4 2 1 29 29 H 0.96999 * 120.00333 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.70226 * 44.26898 * 14 13 2 31 31 H 1.08994 * 109.70621 * 164.83601 * 14 13 2 32 32 H 1.09000 * 109.71076 * 52.87607 * 15 14 13 33 33 H 1.09002 * 109.70916 * 173.50188 * 15 14 13 34 34 H 1.09002 * 109.46887 * 59.99930 * 17 16 15 35 35 H 1.09000 * 109.46922 * 180.02562 * 17 16 15 36 36 H 1.09003 * 109.47179 * 300.00263 * 17 16 15 37 37 H 1.07994 * 119.79895 * 359.71527 * 19 18 16 38 38 H 1.08002 * 119.98809 * 179.97438 * 20 19 18 39 39 H 1.07998 * 119.98959 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.79672 * 179.77479 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5455 -0.6644 1.2827 6 1 4.0847 -0.1635 0.4923 7 6 4.2346 -1.2509 2.3230 8 7 3.5780 -1.8604 3.2858 9 14 6.1008 -1.1798 2.3649 10 1 6.5415 0.2380 2.3969 11 1 6.5957 -1.8799 3.5773 12 1 6.6487 -1.8412 1.1535 13 7 2.0196 -0.6926 -1.1994 14 6 2.3189 0.2621 -2.2725 15 6 0.9920 0.7350 -2.8791 16 7 0.3630 -0.4059 -3.5539 17 6 1.0324 -0.6980 -4.8286 18 6 0.3202 -1.5422 -2.7385 19 6 -0.5602 -2.5626 -3.0876 20 6 -0.6395 -3.7090 -2.3228 21 6 0.1586 -3.8498 -1.2025 22 6 1.0300 -2.8409 -0.8441 23 6 1.1190 -1.6817 -1.6101 24 1 -0.3634 0.3914 -0.9503 25 1 -0.3634 -1.0185 0.1362 26 1 -0.3633 0.6273 0.8140 27 1 1.6381 -0.2357 2.1386 28 1 1.7162 -1.7618 1.2257 29 1 4.0628 -2.2733 4.0175 30 1 2.8613 1.1151 -1.8647 31 1 2.9218 -0.2241 -3.0393 32 1 0.3366 1.1017 -2.0890 33 1 1.1802 1.5304 -3.6001 34 1 2.0798 -0.9359 -4.6427 35 1 0.5460 -1.5475 -5.3081 36 1 0.9679 0.1729 -5.4808 37 1 -1.1847 -2.4568 -3.9624 38 1 -1.3251 -4.4963 -2.5995 39 1 0.0964 -4.7471 -0.6048 40 1 1.6490 -2.9531 0.0337 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709979894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:27 Heat of formation + Delta-G solvation = 54.203596 kcal Electronic energy + Delta-G solvation = -20566.546587 eV Core-core repulsion = 17767.679544 eV Total energy + Delta-G solvation = -2798.867043 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.96350 -36.83637 -36.37216 -32.92684 -31.01571 -30.13726 -29.71650 -27.75392 -27.11850 -24.65041 -23.27806 -23.11742 -21.56902 -20.35766 -18.84471 -16.73033 -16.34593 -15.95401 -15.68839 -14.88295 -14.48313 -14.35813 -14.06825 -13.93876 -13.23924 -13.00331 -12.78537 -12.38442 -12.19325 -12.10346 -11.87558 -11.74895 -11.50038 -11.27833 -11.11631 -10.82767 -10.75948 -10.58070 -10.20834 -9.92620 -9.71546 -9.19744 -8.99163 -8.55025 -8.27318 -7.64787 -7.26836 -5.91189 -3.89518 1.74945 1.85538 3.38131 3.42500 3.45487 3.88054 4.16793 4.36772 4.53663 5.00514 5.11476 5.21685 5.33180 5.41702 5.45445 5.46860 5.52827 5.64952 5.73640 5.76001 5.80740 5.85512 5.94858 6.00570 6.07954 6.24906 6.36114 6.45713 6.63096 6.65198 6.76840 6.92734 6.99060 7.06794 7.13856 7.43794 7.55390 7.73639 7.92905 8.01626 8.09373 8.53513 9.14394 9.71870 11.20480 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023349 B = 0.006896 C = 0.006219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.923799 B = 4059.557295 C = 4501.285572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.092 3.908 3 H 0.069 0.931 4 C 0.028 3.972 5 C -0.493 4.493 6 H 0.056 0.944 7 C 0.053 3.947 8 N -0.902 5.902 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.468 5.468 14 C 0.020 3.980 15 C 0.006 3.994 16 N -0.493 5.493 17 C 0.028 3.972 18 C 0.047 3.953 19 C -0.112 4.112 20 C -0.136 4.136 21 C -0.124 4.124 22 C -0.103 4.103 23 C 0.100 3.900 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.020 0.980 28 H 0.028 0.972 29 H 0.259 0.741 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.339 1.333 -13.296 15.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.013 4.013 3 H 0.087 0.913 4 C -0.009 4.009 5 C -0.532 4.532 6 H 0.074 0.926 7 C -0.147 4.147 8 N -0.542 5.542 9 Si 0.717 3.283 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.182 5.182 14 C -0.110 4.110 15 C -0.123 4.123 16 N -0.209 5.209 17 C -0.118 4.118 18 C -0.051 4.051 19 C -0.133 4.133 20 C -0.156 4.156 21 C -0.143 4.143 22 C -0.123 4.123 23 C 0.000 4.000 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.290 1.249 -13.115 15.057 hybrid contribution 1.214 0.177 0.045 1.227 sum -6.077 1.425 -13.071 14.485 Atomic orbital electron populations 1.22757 0.98099 1.02447 1.00972 1.22088 0.91159 0.97204 0.90839 0.91278 1.19321 0.96234 0.95891 0.89418 1.21067 0.91503 1.34211 1.06396 0.92620 1.24972 0.97930 0.95878 0.95879 1.69944 1.35218 1.37429 1.11610 0.86717 0.86482 0.77949 0.77143 1.20546 1.21553 1.20428 1.59158 1.41131 1.12689 1.05206 1.22903 0.96864 0.96620 0.94589 1.23159 0.96427 0.93044 0.99669 1.59248 1.52505 1.04404 1.04762 1.22484 0.97213 1.01850 0.90264 1.18817 0.96943 0.91737 0.97629 1.20673 0.98504 0.93473 1.00608 1.20826 1.00749 0.97674 0.96321 1.20996 0.97125 0.98943 0.97218 1.21437 0.98922 0.91460 1.00432 1.18878 0.90546 0.94300 0.96260 0.92906 0.92096 0.92577 0.96227 0.95389 0.93186 0.89392 0.90818 0.88840 0.90090 0.94778 0.91172 0.91269 0.86612 0.86693 0.86351 0.83758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.32 7.90 37.16 0.29 -3.03 16 2 C 0.09 1.86 2.04 -67.71 -0.14 1.72 16 3 H 0.07 1.37 7.40 -51.93 -0.38 0.99 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.49 -13.62 8.78 -34.44 -0.30 -13.92 16 6 H 0.06 1.53 7.73 -52.49 -0.41 1.12 16 7 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 8 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 9 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 13 N -0.47 -9.07 4.13 -163.30 -0.68 -9.74 16 14 C 0.02 0.32 5.81 -3.73 -0.02 0.29 16 15 C 0.01 0.08 5.61 -3.73 -0.02 0.06 16 16 N -0.49 -7.04 4.85 -178.67 -0.87 -7.91 16 17 C 0.03 0.33 9.28 60.07 0.56 0.89 16 18 C 0.05 0.77 4.66 -83.53 -0.39 0.38 16 19 C -0.11 -1.66 9.24 -39.29 -0.36 -2.02 16 20 C -0.14 -1.95 10.04 -39.65 -0.40 -2.35 16 21 C -0.12 -1.99 10.04 -39.64 -0.40 -2.38 16 22 C -0.10 -1.96 7.97 -39.29 -0.31 -2.27 16 23 C 0.10 1.85 3.47 -83.53 -0.29 1.56 16 24 H 0.05 0.88 4.52 -51.92 -0.23 0.65 16 25 H 0.06 1.16 6.46 -51.93 -0.34 0.83 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.03 0.74 5.27 -51.93 -0.27 0.47 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.09 1.35 7.63 -51.93 -0.40 0.96 16 31 H 0.07 1.16 6.61 -51.93 -0.34 0.82 16 32 H 0.09 1.38 4.85 -51.93 -0.25 1.13 16 33 H 0.08 0.92 7.97 -51.93 -0.41 0.51 16 34 H 0.03 0.43 6.66 -51.93 -0.35 0.08 16 35 H 0.07 0.78 7.61 -51.93 -0.40 0.38 16 36 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 37 H 0.12 1.49 8.02 -52.49 -0.42 1.07 16 38 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.14 3.18 5.82 -52.49 -0.31 2.87 16 LS Contribution 303.22 15.07 4.57 4.57 Total: -1.00 -29.95 303.22 -9.01 -38.96 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.75 Total: 2.40 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -2.00 Total: -19.07 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: -0.81 Total: -43.76 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.95 -9.01 -38.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709979894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.167 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds