Wall clock time and date at job start Mon Mar 30 2020 06:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47680 * 2 1 4 4 C 1.52999 * 109.46797 * 120.00076 * 2 1 3 5 5 C 1.50706 * 109.46972 * 182.66245 * 4 2 1 6 6 H 1.08000 * 119.99990 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00060 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00202 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00169 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47098 * 60.00387 * 9 7 5 11 11 H 1.48494 * 109.47222 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47162 * 300.00554 * 9 7 5 13 13 N 1.46899 * 109.47011 * 239.99513 * 2 1 3 14 14 C 1.46715 * 111.00133 * 95.51287 * 13 2 1 15 15 C 1.53373 * 108.26345 * 284.57914 * 14 13 2 16 16 N 1.46720 * 108.24503 * 293.18734 * 15 14 13 17 17 C 1.46905 * 110.99980 * 284.67350 * 16 15 14 18 18 C 1.39929 * 112.11509 * 49.42519 * 16 15 14 19 19 C 1.39226 * 117.92621 * 162.36332 * 18 16 15 20 20 C 1.38039 * 120.39811 * 179.69350 * 19 18 16 21 21 C 1.38263 * 120.02499 * 359.97438 * 20 19 18 22 22 C 1.38041 * 120.01844 * 0.34669 * 21 20 19 23 23 C 1.38947 * 122.49550 * 342.24077 * 18 16 15 24 24 H 1.09007 * 109.47160 * 67.61276 * 1 2 3 25 25 H 1.08993 * 109.47648 * 187.61731 * 1 2 3 26 26 H 1.09001 * 109.46749 * 307.62025 * 1 2 3 27 27 H 1.09002 * 109.47325 * 302.65893 * 4 2 1 28 28 H 1.08995 * 109.47773 * 62.66600 * 4 2 1 29 29 H 0.96999 * 120.00333 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.70226 * 44.26898 * 14 13 2 31 31 H 1.08994 * 109.70621 * 164.83601 * 14 13 2 32 32 H 1.09000 * 109.71076 * 52.87607 * 15 14 13 33 33 H 1.09002 * 109.70916 * 173.50188 * 15 14 13 34 34 H 1.09002 * 109.46887 * 59.99930 * 17 16 15 35 35 H 1.09000 * 109.46922 * 180.02562 * 17 16 15 36 36 H 1.09003 * 109.47179 * 300.00263 * 17 16 15 37 37 H 1.07994 * 119.79895 * 359.71527 * 19 18 16 38 38 H 1.08002 * 119.98809 * 179.97438 * 20 19 18 39 39 H 1.07998 * 119.98959 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.79672 * 179.77479 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5455 -0.6644 1.2827 6 1 4.0847 -0.1635 0.4923 7 6 4.2346 -1.2509 2.3230 8 7 3.5780 -1.8604 3.2858 9 14 6.1008 -1.1798 2.3649 10 1 6.5415 0.2380 2.3969 11 1 6.5957 -1.8799 3.5773 12 1 6.6487 -1.8412 1.1535 13 7 2.0196 -0.6926 -1.1994 14 6 2.3189 0.2621 -2.2725 15 6 0.9920 0.7350 -2.8791 16 7 0.3630 -0.4059 -3.5539 17 6 1.0324 -0.6980 -4.8286 18 6 0.3202 -1.5422 -2.7385 19 6 -0.5602 -2.5626 -3.0876 20 6 -0.6395 -3.7090 -2.3228 21 6 0.1586 -3.8498 -1.2025 22 6 1.0300 -2.8409 -0.8441 23 6 1.1190 -1.6817 -1.6101 24 1 -0.3634 0.3914 -0.9503 25 1 -0.3634 -1.0185 0.1362 26 1 -0.3633 0.6273 0.8140 27 1 1.6381 -0.2357 2.1386 28 1 1.7162 -1.7618 1.2257 29 1 4.0628 -2.2733 4.0175 30 1 2.8613 1.1151 -1.8647 31 1 2.9218 -0.2241 -3.0393 32 1 0.3366 1.1017 -2.0890 33 1 1.1802 1.5304 -3.6001 34 1 2.0798 -0.9359 -4.6427 35 1 0.5460 -1.5475 -5.3081 36 1 0.9679 0.1729 -5.4808 37 1 -1.1847 -2.4568 -3.9624 38 1 -1.3251 -4.4963 -2.5995 39 1 0.0964 -4.7471 -0.6048 40 1 1.6490 -2.9531 0.0337 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709979894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:26 Heat of formation + Delta-G solvation = 35.621008 kcal Electronic energy + Delta-G solvation = -20567.352389 eV Core-core repulsion = 17767.679544 eV Total energy + Delta-G solvation = -2799.672845 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.24384 -38.15184 -37.65369 -34.95334 -32.68460 -31.36583 -30.96608 -29.36309 -28.54773 -25.83576 -25.11461 -24.41598 -23.02052 -21.75938 -20.20275 -18.48616 -17.81802 -17.24861 -17.18406 -16.44889 -16.26127 -15.48383 -15.33032 -15.21811 -14.68983 -14.41453 -14.16939 -13.88173 -13.60185 -13.50095 -13.35397 -13.13332 -12.92633 -12.81541 -12.56860 -12.50752 -12.41572 -12.09876 -11.83759 -11.58339 -11.23942 -11.08299 -10.62377 -10.47385 -9.89302 -8.83826 -8.63308 -8.11162 -6.16204 0.50445 0.57437 1.38751 1.41533 1.48672 2.44766 2.71219 2.93682 3.04530 3.24294 3.82290 3.96375 4.05505 4.12810 4.24827 4.29750 4.32857 4.43293 4.51138 4.54391 4.62646 4.65905 4.70491 4.76714 4.84174 4.94099 5.01214 5.13385 5.19813 5.27563 5.39434 5.45926 5.48235 5.68909 5.73769 5.85171 5.95075 5.97738 6.23690 6.33650 6.42173 6.69567 6.96341 7.48829 9.00570 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023349 B = 0.006896 C = 0.006219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.923799 B = 4059.557295 C = 4501.285572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 H 0.071 0.929 4 C 0.034 3.966 5 C -0.501 4.501 6 H 0.055 0.945 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.954 3.046 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.494 5.494 14 C 0.019 3.981 15 C 0.013 3.987 16 N -0.492 5.492 17 C 0.027 3.973 18 C 0.048 3.952 19 C -0.110 4.110 20 C -0.124 4.124 21 C -0.129 4.129 22 C -0.131 4.131 23 C 0.080 3.920 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.060 0.940 27 H -0.010 1.010 28 H 0.007 0.993 29 H 0.259 0.741 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.023 0.977 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.144 0.856 38 H 0.152 0.848 39 H 0.130 0.870 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.040 1.882 -16.127 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.001 4.001 3 H 0.089 0.911 4 C -0.003 4.003 5 C -0.539 4.539 6 H 0.073 0.927 7 C -0.199 4.199 8 N -0.580 5.580 9 Si 0.780 3.220 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.209 5.209 14 C -0.110 4.110 15 C -0.116 4.116 16 N -0.208 5.208 17 C -0.118 4.118 18 C -0.051 4.051 19 C -0.130 4.130 20 C -0.143 4.143 21 C -0.148 4.148 22 C -0.152 4.152 23 C -0.019 4.019 24 H 0.090 0.910 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.008 0.992 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.131 0.869 34 H 0.042 0.958 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.162 0.838 38 H 0.170 0.830 39 H 0.148 0.852 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.993 1.809 -15.973 17.953 hybrid contribution 1.387 -0.040 0.875 1.640 sum -6.606 1.770 -15.098 16.575 Atomic orbital electron populations 1.22591 0.96360 1.01689 1.02181 1.21731 0.92457 0.96299 0.89607 0.91116 1.19177 0.95175 0.95016 0.90979 1.21397 0.92918 1.33529 1.06063 0.92697 1.25815 1.02755 0.95681 0.95647 1.70083 1.37021 1.38541 1.12327 0.85663 0.80757 0.78433 0.77103 1.19295 1.21215 1.20102 1.58943 1.42238 1.13834 1.05925 1.22952 0.98311 0.95975 0.93713 1.23117 0.94610 0.93672 1.00155 1.59360 1.52687 1.03632 1.05168 1.22590 0.96391 1.03570 0.89262 1.18983 0.96363 0.92839 0.96878 1.21047 0.97910 0.92807 1.01205 1.21191 0.99951 0.98417 0.94739 1.21174 0.96801 0.98587 0.98262 1.21232 1.00313 0.93583 1.00040 1.18904 0.91702 0.93812 0.97513 0.90983 0.93647 0.92069 0.99155 0.97532 0.93249 0.89260 0.90701 0.89767 0.86888 0.95824 0.90168 0.88666 0.83780 0.83047 0.85206 0.88281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.19 7.90 71.98 0.57 -5.62 16 2 C 0.10 4.35 2.04 44.91 0.09 4.44 16 3 H 0.07 2.86 7.40 -2.39 -0.02 2.84 16 4 C 0.03 1.79 4.45 29.85 0.13 1.92 16 5 C -0.50 -28.69 8.78 25.60 0.22 -28.46 16 6 H 0.05 3.08 7.73 -2.91 -0.02 3.06 16 7 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 8 N -0.94 -58.11 13.29 21.45 0.28 -57.82 16 9 Si 0.95 45.90 29.54 68.60 2.03 47.93 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 N -0.49 -19.48 4.13 -670.57 -2.77 -22.25 16 14 C 0.02 0.60 5.81 86.46 0.50 1.10 16 15 C 0.01 0.33 5.61 86.46 0.49 0.81 16 16 N -0.49 -12.51 4.85 -719.18 -3.49 -16.00 16 17 C 0.03 0.54 9.28 127.69 1.18 1.73 16 18 C 0.05 1.47 4.66 38.26 0.18 1.65 16 19 C -0.11 -2.88 9.24 22.46 0.21 -2.67 16 20 C -0.12 -3.21 10.04 22.23 0.22 -2.98 16 21 C -0.13 -4.13 10.04 22.23 0.22 -3.90 16 22 C -0.13 -5.24 7.97 22.46 0.18 -5.06 16 23 C 0.08 2.98 3.47 38.25 0.13 3.12 16 24 H 0.07 2.33 4.52 -2.38 -0.01 2.32 16 25 H 0.04 1.78 6.46 -2.39 -0.02 1.76 16 26 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 27 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 28 H 0.01 0.37 5.27 -2.39 -0.01 0.36 16 29 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.09 2.67 7.63 -2.39 -0.02 2.65 16 31 H 0.07 2.28 6.61 -2.39 -0.02 2.26 16 32 H 0.08 2.28 4.85 -2.39 -0.01 2.27 16 33 H 0.11 2.12 7.97 -2.39 -0.02 2.10 16 34 H 0.02 0.52 6.66 -2.39 -0.02 0.51 16 35 H 0.08 1.44 7.61 -2.39 -0.02 1.43 16 36 H 0.09 1.42 8.09 -2.39 -0.02 1.40 16 37 H 0.14 2.99 8.02 -2.91 -0.02 2.97 16 38 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 39 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 40 H 0.10 4.80 5.82 -2.91 -0.02 4.78 16 Total: -1.00 -67.23 303.22 1.87 -65.36 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 1.03 Total: 16.42 kcal Atomic # 6 Polarization: -38.43 SS G_CDS: 4.80 Total: -33.63 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -5.98 Total: -96.08 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -67.23 1.87 -65.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709979894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.982 kcal (2) G-P(sol) polarization free energy of solvation -67.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds