Wall clock time and date at job start Mon Mar 30 2020 07:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00030 * 2 1 4 4 H 1.48506 * 109.47064 * 240.00155 * 3 2 1 5 5 H 1.48506 * 109.47000 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47398 * 120.00106 * 3 2 1 7 7 C 1.37877 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00117 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99851 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47087 * 300.00203 * 9 7 2 11 11 N 1.46905 * 109.47121 * 60.00006 * 9 7 2 12 12 C 1.50698 * 109.47079 * 179.97438 * 9 7 2 13 13 C 1.38237 * 119.99828 * 280.00184 * 12 9 7 14 14 C 1.38325 * 119.98651 * 180.02562 * 13 12 9 15 15 Cl 1.73608 * 120.01106 * 179.97438 * 14 13 12 16 16 C 1.38369 * 119.97584 * 359.97438 * 14 13 12 17 17 C 1.38196 * 119.98777 * 0.02562 * 16 14 13 18 18 C 1.50702 * 119.99143 * 179.97438 * 17 16 14 19 19 F 1.39895 * 109.47245 * 30.00485 * 18 17 16 20 20 F 1.39900 * 109.46581 * 150.00079 * 18 17 16 21 21 C 1.38230 * 119.99146 * 99.73005 * 12 9 7 22 22 H 0.97003 * 119.99846 * 0.02562 * 1 2 3 23 23 H 1.00901 * 110.99869 * 60.00289 * 11 9 7 24 24 H 1.00896 * 110.99543 * 183.95412 * 11 9 7 25 25 H 1.07999 * 120.00654 * 0.02562 * 13 12 9 26 26 H 1.08005 * 120.00663 * 179.97438 * 16 14 13 27 27 H 1.08995 * 109.47095 * 270.00041 * 18 17 16 28 28 H 1.08005 * 119.98099 * 359.97326 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 1 0.6247 -2.5563 0.8920 11 7 0.4060 -2.5778 -1.1974 12 6 2.2304 -3.6445 0.0015 13 6 2.8367 -4.0352 -1.1778 14 6 3.7351 -5.0870 -1.1779 15 17 4.4964 -5.5786 -2.6587 16 6 4.0269 -5.7470 0.0027 17 6 3.4202 -5.3556 1.1811 18 6 3.7375 -6.0747 2.4668 19 9 5.0474 -6.5635 2.4168 20 9 3.6117 -5.1871 3.5408 21 6 2.5266 -4.3007 1.1815 22 1 -0.4850 0.8401 -0.0004 23 1 0.9637 -2.5270 -2.0367 24 1 -0.1578 -3.4144 -1.1880 25 1 2.6089 -3.5195 -2.0989 26 1 4.7281 -6.5685 0.0032 27 1 3.0445 -6.9055 2.5990 28 1 2.0563 -3.9919 2.1034 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714107336.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:13 Heat of formation + Delta-G solvation = -105.010783 kcal Electronic energy + Delta-G solvation = -17035.059717 eV Core-core repulsion = 13746.383404 eV Total energy + Delta-G solvation = -3288.676313 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.043 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.98990 -48.01371 -40.59994 -37.61975 -36.47034 -33.82999 -32.48245 -31.19998 -28.04285 -27.18776 -24.69965 -23.20995 -21.55467 -18.64027 -18.44740 -18.41021 -18.16862 -17.01684 -16.63283 -16.45897 -15.97982 -15.63572 -14.93055 -14.69577 -14.65512 -14.31937 -14.25848 -13.85901 -13.42641 -13.12720 -12.88795 -12.70854 -12.59593 -12.42230 -12.18606 -12.01194 -11.62044 -11.29073 -10.56396 -9.94965 -9.67767 -8.94660 -8.00766 -6.22187 0.00162 0.18983 1.03625 1.43913 1.44592 1.51597 2.38771 2.53632 2.78227 3.22037 3.24417 3.57091 3.89103 4.00475 4.08335 4.13768 4.38069 4.43702 4.56675 4.81697 5.06210 5.16696 5.23700 5.66405 5.68103 5.74374 6.12019 6.61248 7.06293 7.23757 7.50538 9.02263 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.017404 B = 0.006850 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.437101 B = 4086.525098 C = 4982.370625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.044 0.956 9 C 0.261 3.739 10 H 0.022 0.978 11 N -0.819 5.819 12 C -0.080 4.080 13 C -0.099 4.099 14 C -0.036 4.036 15 Cl -0.061 7.061 16 C -0.096 4.096 17 C -0.157 4.157 18 C 0.319 3.681 19 F -0.205 7.205 20 F -0.210 7.210 21 C -0.092 4.092 22 H 0.257 0.743 23 H 0.324 0.676 24 H 0.314 0.686 25 H 0.129 0.871 26 H 0.158 0.842 27 H 0.169 0.831 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.543 -14.111 0.539 15.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.062 0.938 9 C 0.151 3.849 10 H 0.040 0.960 11 N -0.346 5.346 12 C -0.083 4.083 13 C -0.119 4.119 14 C -0.063 4.063 15 Cl -0.032 7.032 16 C -0.114 4.114 17 C -0.158 4.158 18 C 0.266 3.734 19 F -0.186 7.186 20 F -0.191 7.191 21 C -0.111 4.111 22 H 0.066 0.934 23 H 0.137 0.863 24 H 0.126 0.874 25 H 0.147 0.853 26 H 0.176 0.824 27 H 0.186 0.814 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.111 -13.342 0.692 14.691 hybrid contribution 0.974 0.388 -0.337 1.101 sum 7.084 -12.954 0.355 14.769 Atomic orbital electron populations 1.70192 1.06858 1.26553 1.47457 1.25588 0.95378 1.01515 0.93870 0.85880 0.78588 0.80027 0.78587 1.19958 1.20934 1.20049 1.21053 0.91967 0.91017 1.54504 0.93793 1.17896 0.87541 0.88932 0.90568 0.95998 1.58976 1.28332 1.43274 1.04049 1.21440 0.97877 0.96489 0.92496 1.20983 0.95979 0.95681 0.99213 1.20815 0.98802 0.98350 0.88297 1.98350 1.80509 1.90776 1.33597 1.20815 1.00004 1.00967 0.89632 1.20493 1.00648 0.99289 0.95405 1.20623 0.81781 0.89947 0.81079 1.92973 1.40805 1.88299 1.96563 1.92991 1.95928 1.71999 1.58222 1.21013 0.97392 0.94128 0.98592 0.93426 0.86289 0.87414 0.85303 0.82423 0.81398 0.85168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.97 12.77 21.45 0.27 -49.69 15 2 C 0.04 2.23 5.39 84.65 0.46 2.68 15 3 Si 0.94 43.27 29.54 68.60 2.03 45.29 15 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 15 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 6 H -0.28 -12.42 7.11 99.48 0.71 -11.72 15 7 C -0.55 -29.24 8.70 25.60 0.22 -29.01 15 8 H 0.04 2.38 7.74 -2.91 -0.02 2.36 15 9 C 0.26 12.30 2.85 43.42 0.12 12.43 15 10 H 0.02 1.16 8.01 -2.39 -0.02 1.14 15 11 N -0.82 -36.42 8.36 -174.94 -1.46 -37.88 15 12 C -0.08 -3.11 4.88 -19.87 -0.10 -3.20 15 13 C -0.10 -3.46 9.07 22.29 0.20 -3.26 15 14 C -0.04 -1.07 6.32 22.32 0.14 -0.93 15 15 Cl -0.06 -1.58 28.96 -2.72 -0.08 -1.66 15 16 C -0.10 -2.55 9.18 22.29 0.20 -2.35 15 17 C -0.16 -4.37 5.74 -19.87 -0.11 -4.48 15 18 C 0.32 7.00 5.65 71.24 0.40 7.41 15 19 F -0.21 -4.80 16.48 44.97 0.74 -4.06 15 20 F -0.21 -5.72 16.47 44.97 0.74 -4.98 15 21 C -0.09 -3.16 9.02 22.27 0.20 -2.96 15 22 H 0.26 14.09 8.31 -92.71 -0.77 13.32 15 23 H 0.32 13.67 7.34 -89.69 -0.66 13.02 15 24 H 0.31 12.29 9.06 -89.70 -0.81 11.48 15 25 H 0.13 4.52 6.66 -2.91 -0.02 4.50 15 26 H 0.16 3.41 7.60 -2.91 -0.02 3.38 15 27 H 0.17 2.17 8.14 -2.39 -0.02 2.15 15 28 H 0.13 4.47 7.58 -2.91 -0.02 4.45 15 Total: -1.00 -60.05 271.16 3.74 -56.31 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -0.25 Total: 20.34 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 1.74 Total: -23.67 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -1.19 Total: -87.58 kcal Atomic # 9 Polarization: -10.52 SS G_CDS: 1.48 Total: -9.03 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.66 kcal Total: -60.05 3.74 -56.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714107336.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.699 kcal (2) G-P(sol) polarization free energy of solvation -60.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds