Wall clock time and date at job start Mon Mar 30 2020 07:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36972 * 119.99612 * 2 1 4 4 H 1.08005 * 119.99505 * 174.38841 * 3 2 1 5 5 C 1.38967 * 120.00507 * 354.67133 * 3 2 1 6 6 N 1.31422 * 119.99735 * 5.04091 * 5 3 2 7 7 Si 1.86800 * 120.00334 * 185.04674 * 5 3 2 8 8 H 1.48499 * 109.47128 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47191 * 119.99516 * 7 5 3 10 10 H 1.48500 * 109.47150 * 239.99569 * 7 5 3 11 11 C 1.34768 * 120.00071 * 180.02562 * 2 1 3 12 12 O 1.21664 * 120.00228 * 174.24161 * 11 2 1 13 13 C 1.47113 * 120.00275 * 354.23781 * 11 2 1 14 14 C 1.36095 * 123.46923 * 305.48238 * 13 11 2 15 15 S 1.70446 * 110.80892 * 179.91340 * 14 13 11 16 16 C 1.75500 * 92.45120 * 0.29721 * 15 14 13 17 17 C 1.32758 * 110.59640 * 359.82937 * 16 15 14 18 18 C 1.50697 * 123.46021 * 179.97438 * 17 16 15 19 19 F 1.39903 * 109.47133 * 34.64715 * 18 17 16 20 20 F 1.39901 * 109.46961 * 154.64610 * 18 17 16 21 21 H 1.08996 * 109.47088 * 64.60864 * 1 2 3 22 22 H 1.08996 * 109.47105 * 184.60988 * 1 2 3 23 23 H 1.08996 * 109.47333 * 304.60736 * 1 2 3 24 24 H 0.97001 * 119.99799 * 180.02562 * 6 5 3 25 25 H 1.08002 * 124.59576 * 359.97438 * 14 13 11 26 26 H 1.07999 * 124.70459 * 179.80554 * 16 15 14 27 27 H 1.09002 * 109.47283 * 274.64571 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1863 0.0000 4 1 3.2260 1.1885 0.0915 5 6 1.4595 2.3872 -0.1118 6 7 0.1453 2.3915 -0.1177 7 14 2.3995 3.9952 -0.2537 8 1 3.8584 3.7202 -0.2222 9 1 2.0487 4.6623 -1.5332 10 1 2.0386 4.8815 0.8818 11 6 2.1389 -1.1671 -0.0005 12 8 3.3509 -1.1698 -0.1062 13 6 1.4090 -2.4380 0.1268 14 6 0.5477 -2.7102 1.1448 15 16 -0.1184 -4.2698 0.9739 16 6 0.7858 -4.5765 -0.4987 17 6 1.5371 -3.5279 -0.8124 18 6 2.4323 -3.4798 -2.0237 19 9 1.8354 -4.1867 -3.0731 20 9 2.6252 -2.1487 -2.4084 21 1 -0.3633 0.4406 -0.9284 22 1 -0.3633 -1.0243 0.0826 23 1 -0.3634 0.5836 0.8458 24 1 -0.3366 3.2297 -0.1961 25 1 0.3167 -2.0297 1.9511 26 1 0.7380 -5.4917 -1.0702 27 1 3.3946 -3.9314 -1.7825 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717213641.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:10 Heat of formation + Delta-G solvation = -82.108355 kcal Electronic energy + Delta-G solvation = -17780.655972 eV Core-core repulsion = 14495.016489 eV Total energy + Delta-G solvation = -3285.639483 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.038 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.55923 -46.52695 -38.93365 -36.54645 -34.64107 -31.72017 -30.10810 -26.80196 -26.18910 -24.81791 -23.01378 -20.46913 -18.61419 -17.44162 -17.07136 -17.00696 -16.63180 -16.15269 -15.33527 -14.43467 -14.09521 -13.90674 -13.43914 -13.03672 -12.96845 -12.88867 -12.61936 -12.42425 -12.13348 -11.69081 -11.48478 -11.17766 -11.00009 -10.80946 -10.54943 -10.33610 -10.22081 -9.06965 -8.77586 -8.53906 -8.07371 -7.88483 -6.29008 -3.82017 1.08802 1.68749 2.06568 2.38129 3.15104 3.23726 3.31521 3.92482 4.09858 4.16635 4.61812 4.75386 5.02243 5.17889 5.25749 5.29470 5.58092 5.81416 6.01437 6.29845 6.44426 6.45853 7.10360 7.39572 7.52498 8.02988 8.45433 9.14981 9.39908 9.95258 10.64479 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.026494 B = 0.007290 C = 0.006277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.571853 B = 3839.764378 C = 4459.687512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.430 5.430 3 C -0.292 4.292 4 H 0.107 0.893 5 C 0.026 3.974 6 N -0.883 5.883 7 Si 0.933 3.067 8 H -0.267 1.267 9 H -0.279 1.279 10 H -0.281 1.281 11 C 0.488 3.512 12 O -0.586 6.586 13 C -0.082 4.082 14 C -0.229 4.229 15 S 0.168 5.832 16 C -0.203 4.203 17 C -0.146 4.146 18 C 0.335 3.665 19 F -0.208 7.208 20 F -0.177 7.177 21 H 0.064 0.936 22 H 0.027 0.973 23 H 0.075 0.925 24 H 0.266 0.734 25 H 0.172 0.828 26 H 0.171 0.829 27 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.913 -11.776 0.658 12.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.146 5.146 3 C -0.420 4.420 4 H 0.125 0.875 5 C -0.177 4.177 6 N -0.523 5.523 7 Si 0.760 3.240 8 H -0.191 1.191 9 H -0.205 1.205 10 H -0.207 1.207 11 C 0.274 3.726 12 O -0.472 6.472 13 C -0.099 4.099 14 C -0.366 4.366 15 S 0.434 5.566 16 C -0.338 4.338 17 C -0.161 4.161 18 C 0.279 3.721 19 F -0.189 7.189 20 F -0.158 7.158 21 H 0.083 0.917 22 H 0.046 0.954 23 H 0.093 0.907 24 H 0.077 0.923 25 H 0.189 0.811 26 H 0.188 0.812 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.552 -12.392 1.430 12.970 hybrid contribution 1.063 1.801 -0.960 2.301 sum -2.489 -10.591 0.470 10.890 Atomic orbital electron populations 1.21928 0.80129 0.96959 1.04412 1.43605 1.06215 1.04529 1.60236 1.19901 0.93676 0.81798 1.46670 0.87496 1.25381 0.95824 0.99904 0.96545 1.70204 1.05917 1.27220 1.49006 0.85738 0.79796 0.80628 0.77859 1.19082 1.20529 1.20688 1.17020 0.87036 0.82132 0.86409 1.90623 1.13287 1.86351 1.56978 1.20264 0.98633 0.96511 0.94447 1.25474 1.04078 1.02188 1.04856 1.82710 1.43567 1.09594 1.20691 1.25162 1.03183 1.03001 1.02485 1.20480 1.02026 0.94902 0.98672 1.19812 0.95180 0.76572 0.80516 1.92963 1.86477 1.78728 1.60743 1.93117 1.95868 1.35158 1.91634 0.91732 0.95409 0.90673 0.92295 0.81086 0.81175 0.86229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.58 8.50 59.85 0.51 3.09 15 2 N -0.43 -11.40 3.02 -123.53 -0.37 -11.78 15 3 C -0.29 -8.26 9.55 -14.98 -0.14 -8.40 15 4 H 0.11 3.15 7.20 -52.48 -0.38 2.77 15 5 C 0.03 0.68 5.46 -17.46 -0.10 0.58 15 6 N -0.88 -23.28 9.44 55.50 0.52 -22.75 15 7 Si 0.93 20.89 29.56 -169.99 -5.02 15.86 15 8 H -0.27 -6.00 7.11 56.52 0.40 -5.59 15 9 H -0.28 -6.20 7.11 56.52 0.40 -5.79 15 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 11 C 0.49 12.42 5.74 -12.66 -0.07 12.35 15 12 O -0.59 -16.61 15.60 5.22 0.08 -16.53 15 13 C -0.08 -1.68 4.72 -104.62 -0.49 -2.17 15 14 C -0.23 -3.86 8.62 29.96 0.26 -3.60 15 15 S 0.17 2.13 23.02 -107.50 -2.47 -0.35 15 16 C -0.20 -2.79 10.54 28.86 0.30 -2.48 15 17 C -0.15 -2.56 5.80 -104.06 -0.60 -3.17 15 18 C 0.34 5.80 5.60 36.00 0.20 6.00 15 19 F -0.21 -3.33 16.97 2.25 0.04 -3.29 15 20 F -0.18 -3.92 14.55 2.25 0.03 -3.89 15 21 H 0.06 1.63 7.16 -51.93 -0.37 1.26 15 22 H 0.03 0.57 4.87 -51.93 -0.25 0.32 15 23 H 0.07 1.83 6.92 -51.93 -0.36 1.47 15 24 H 0.27 6.62 8.31 -40.82 -0.34 6.28 15 25 H 0.17 2.77 8.01 -52.49 -0.42 2.35 15 26 H 0.17 1.82 8.05 -52.49 -0.42 1.40 15 27 H 0.12 1.72 8.14 -51.93 -0.42 1.30 15 LS Contribution 256.67 15.07 3.87 3.87 Total: -1.00 -31.40 256.67 -5.23 -36.62 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -1.76 Total: 0.03 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -0.14 Total: 2.20 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.15 Total: -34.53 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.08 Total: -16.53 kcal Atomic # 9 Polarization: -7.24 SS G_CDS: 0.07 Total: -7.17 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.47 Total: -0.35 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.40 -5.23 -36.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717213641.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.483 kcal (2) G-P(sol) polarization free energy of solvation -31.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds