Wall clock time and date at job start Mon Mar 30 2020 07:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36972 * 119.99612 * 2 1 4 4 H 1.08005 * 119.99505 * 174.38841 * 3 2 1 5 5 C 1.38967 * 120.00507 * 354.67133 * 3 2 1 6 6 N 1.31422 * 119.99735 * 5.04091 * 5 3 2 7 7 Si 1.86800 * 120.00334 * 185.04674 * 5 3 2 8 8 H 1.48499 * 109.47128 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47191 * 119.99516 * 7 5 3 10 10 H 1.48500 * 109.47150 * 239.99569 * 7 5 3 11 11 C 1.34768 * 120.00071 * 180.02562 * 2 1 3 12 12 O 1.21664 * 120.00228 * 174.24161 * 11 2 1 13 13 C 1.47113 * 120.00275 * 354.23781 * 11 2 1 14 14 C 1.36095 * 123.46923 * 305.48238 * 13 11 2 15 15 S 1.70446 * 110.80892 * 179.91340 * 14 13 11 16 16 C 1.75500 * 92.45120 * 0.29721 * 15 14 13 17 17 C 1.32758 * 110.59640 * 359.82937 * 16 15 14 18 18 C 1.50697 * 123.46021 * 179.97438 * 17 16 15 19 19 F 1.39903 * 109.47133 * 34.64715 * 18 17 16 20 20 F 1.39901 * 109.46961 * 154.64610 * 18 17 16 21 21 H 1.08996 * 109.47088 * 64.60864 * 1 2 3 22 22 H 1.08996 * 109.47105 * 184.60988 * 1 2 3 23 23 H 1.08996 * 109.47333 * 304.60736 * 1 2 3 24 24 H 0.97001 * 119.99799 * 180.02562 * 6 5 3 25 25 H 1.08002 * 124.59576 * 359.97438 * 14 13 11 26 26 H 1.07999 * 124.70459 * 179.80554 * 16 15 14 27 27 H 1.09002 * 109.47283 * 274.64571 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1863 0.0000 4 1 3.2260 1.1885 0.0915 5 6 1.4595 2.3872 -0.1118 6 7 0.1453 2.3915 -0.1177 7 14 2.3995 3.9952 -0.2537 8 1 3.8584 3.7202 -0.2222 9 1 2.0487 4.6623 -1.5332 10 1 2.0386 4.8815 0.8818 11 6 2.1389 -1.1671 -0.0005 12 8 3.3509 -1.1698 -0.1062 13 6 1.4090 -2.4380 0.1268 14 6 0.5477 -2.7102 1.1448 15 16 -0.1184 -4.2698 0.9739 16 6 0.7858 -4.5765 -0.4987 17 6 1.5371 -3.5279 -0.8124 18 6 2.4323 -3.4798 -2.0237 19 9 1.8354 -4.1867 -3.0731 20 9 2.6252 -2.1487 -2.4084 21 1 -0.3633 0.4406 -0.9284 22 1 -0.3633 -1.0243 0.0826 23 1 -0.3634 0.5836 0.8458 24 1 -0.3366 3.2297 -0.1961 25 1 0.3167 -2.0297 1.9511 26 1 0.7380 -5.4917 -1.0702 27 1 3.3946 -3.9314 -1.7825 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717213641.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:10 Heat of formation + Delta-G solvation = -102.465698 kcal Electronic energy + Delta-G solvation = -17781.538732 eV Core-core repulsion = 14495.016489 eV Total energy + Delta-G solvation = -3286.522244 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 261.038 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.94002 -47.96067 -40.69613 -38.05555 -36.66690 -33.68520 -31.52833 -28.46335 -27.82776 -26.62684 -24.59862 -22.02609 -20.05887 -19.11445 -18.71788 -18.40607 -18.18558 -17.69029 -16.96739 -16.20390 -15.89671 -15.72404 -14.92482 -14.66868 -14.33937 -14.31334 -14.10484 -13.87447 -13.66352 -13.47903 -13.25196 -12.80242 -12.72815 -12.53534 -12.26187 -12.13210 -11.80782 -11.07183 -10.50434 -9.99901 -9.92622 -9.29150 -8.29454 -5.93557 -0.15224 0.56689 0.79638 0.98889 1.37450 1.38792 1.53580 2.11045 2.25537 2.85427 3.01002 3.19375 3.36984 3.61216 3.99934 4.01532 4.13015 4.43293 4.59275 4.70039 4.97182 5.10363 5.18087 5.39989 5.43625 5.99109 6.43394 7.11478 7.42290 7.97645 8.62583 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.026494 B = 0.007290 C = 0.006277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.571853 B = 3839.764378 C = 4459.687512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.451 5.451 3 C -0.337 4.337 4 H 0.079 0.921 5 C -0.006 4.006 6 N -0.895 5.895 7 Si 0.996 3.004 8 H -0.275 1.275 9 H -0.271 1.271 10 H -0.265 1.265 11 C 0.487 3.513 12 O -0.628 6.628 13 C -0.126 4.126 14 C -0.238 4.238 15 S 0.290 5.710 16 C -0.187 4.187 17 C -0.179 4.179 18 C 0.329 3.671 19 F -0.200 7.200 20 F -0.213 7.213 21 H 0.042 0.958 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.273 0.727 25 H 0.172 0.828 26 H 0.209 0.791 27 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.572 -13.750 1.234 14.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.168 5.168 3 C -0.465 4.465 4 H 0.097 0.903 5 C -0.207 4.207 6 N -0.535 5.535 7 Si 0.819 3.181 8 H -0.200 1.200 9 H -0.196 1.196 10 H -0.190 1.190 11 C 0.275 3.725 12 O -0.517 6.517 13 C -0.143 4.143 14 C -0.376 4.376 15 S 0.557 5.443 16 C -0.322 4.322 17 C -0.192 4.192 18 C 0.273 3.727 19 F -0.182 7.182 20 F -0.194 7.194 21 H 0.060 0.940 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.190 0.810 26 H 0.226 0.774 27 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.254 -14.388 2.012 15.449 hybrid contribution 1.485 2.208 -1.069 2.868 sum -3.768 -12.180 0.944 12.785 Atomic orbital electron populations 1.21715 0.78829 0.98364 1.02612 1.43814 1.07122 1.04617 1.61200 1.19809 0.92922 0.83701 1.50064 0.90349 1.26133 0.96833 1.02314 0.95375 1.70283 1.06577 1.28295 1.48378 0.84831 0.77964 0.76753 0.78514 1.19961 1.19582 1.18983 1.17849 0.86934 0.83610 0.84092 1.90557 1.15487 1.87527 1.58142 1.19943 1.01344 0.95322 0.97688 1.25737 1.02876 1.05400 1.03595 1.82382 1.39788 1.04268 1.17857 1.25694 1.00807 1.02858 1.02890 1.20356 1.04471 0.95466 0.98912 1.20171 0.96740 0.75004 0.80778 1.92964 1.86494 1.78191 1.60512 1.93039 1.96153 1.38186 1.92049 0.93962 0.92373 0.91747 0.91665 0.81030 0.77429 0.83763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.18 8.50 127.77 1.09 7.26 15 2 N -0.45 -24.98 3.02 -662.98 -2.00 -26.98 15 3 C -0.34 -20.04 9.55 84.07 0.80 -19.24 15 4 H 0.08 4.97 7.20 -2.91 -0.02 4.95 15 5 C -0.01 -0.31 5.46 84.93 0.46 0.15 15 6 N -0.90 -47.93 9.44 21.67 0.20 -47.73 15 7 Si 1.00 43.66 29.56 68.60 2.03 45.69 15 8 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 9 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 10 H -0.26 -10.88 7.11 99.48 0.71 -10.17 15 11 C 0.49 25.80 5.74 86.57 0.50 26.29 15 12 O -0.63 -37.60 15.60 -4.23 -0.07 -37.67 15 13 C -0.13 -5.09 4.72 -19.87 -0.09 -5.19 15 14 C -0.24 -7.53 8.62 67.32 0.58 -6.95 15 15 S 0.29 5.89 23.02 -56.49 -1.30 4.59 15 16 C -0.19 -4.32 10.54 66.64 0.70 -3.62 15 17 C -0.18 -5.96 5.80 -19.46 -0.11 -6.07 15 18 C 0.33 11.22 5.60 71.24 0.40 11.62 15 19 F -0.20 -6.10 16.97 44.97 0.76 -5.34 15 20 F -0.21 -9.82 14.55 44.97 0.65 -9.17 15 21 H 0.04 2.19 7.16 -2.39 -0.02 2.17 15 22 H 0.06 2.38 4.87 -2.39 -0.01 2.37 15 23 H 0.06 3.19 6.92 -2.39 -0.02 3.17 15 24 H 0.27 13.57 8.31 -92.71 -0.77 12.80 15 25 H 0.17 5.30 8.01 -2.91 -0.02 5.28 15 26 H 0.21 3.20 8.05 -2.91 -0.02 3.17 15 27 H 0.15 4.07 8.14 -2.39 -0.02 4.05 15 Total: -1.00 -72.67 256.67 5.82 -66.84 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: 1.22 Total: 5.48 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 4.32 Total: 4.27 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -1.80 Total: -74.70 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -0.07 Total: -37.67 kcal Atomic # 9 Polarization: -15.92 SS G_CDS: 1.42 Total: -14.50 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 5.89 SS G_CDS: -1.30 Total: 4.59 kcal Total: -72.67 5.82 -66.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717213641.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.621 kcal (2) G-P(sol) polarization free energy of solvation -72.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds