Wall clock time and date at job start Mon Mar 30 2020 06:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46713 * 2 1 4 4 C 1.50702 * 109.47187 * 119.99691 * 2 1 3 5 5 H 1.08000 * 120.00015 * 114.67928 * 4 2 1 6 6 C 1.37879 * 119.99971 * 294.68211 * 4 2 1 7 7 N 1.31512 * 119.99857 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99750 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47442 * 59.99954 * 8 6 4 10 10 H 1.48505 * 109.47188 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47258 * 299.99822 * 8 6 4 12 12 N 1.46897 * 109.47271 * 239.99740 * 2 1 3 13 13 C 1.46428 * 111.00108 * 181.35090 * 12 2 1 14 14 C 1.53377 * 108.65733 * 287.89637 * 13 12 2 15 15 C 1.53037 * 107.94619 * 291.80123 * 14 13 12 16 16 H 1.08997 * 109.43851 * 287.24167 * 15 14 13 17 17 C 1.53002 * 109.40618 * 167.34145 * 15 14 13 18 18 N 1.46905 * 109.47106 * 64.21359 * 17 15 14 19 19 C 1.50800 * 109.66373 * 47.30472 * 15 14 13 20 20 C 1.38617 * 118.12634 * 164.41683 * 19 15 14 21 21 C 1.38055 * 120.48734 * 179.63328 * 20 19 15 22 22 C 1.38316 * 119.88741 * 359.91496 * 21 20 19 23 23 C 1.37802 * 119.95353 * 0.14038 * 22 21 20 24 24 C 1.38374 * 122.01583 * 344.49211 * 19 15 14 25 25 H 1.08992 * 109.47420 * 52.15702 * 1 2 3 26 26 H 1.09004 * 109.46650 * 172.15770 * 1 2 3 27 27 H 1.09002 * 109.47083 * 292.15507 * 1 2 3 28 28 H 0.97000 * 119.99448 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.60588 * 168.14799 * 13 12 2 30 30 H 1.08991 * 109.60515 * 47.64624 * 13 12 2 31 31 H 1.09001 * 109.76606 * 172.19021 * 14 13 12 32 32 H 1.09002 * 109.77078 * 51.41657 * 14 13 12 33 33 H 1.09008 * 109.46762 * 184.20797 * 17 15 14 34 34 H 1.08995 * 109.47357 * 304.20936 * 17 15 14 35 35 H 1.00899 * 110.99613 * 61.32670 * 18 17 15 36 36 H 1.00894 * 110.99651 * 185.27571 * 18 17 15 37 37 H 1.08000 * 119.75738 * 359.61768 * 20 19 15 38 38 H 1.08001 * 120.05972 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.01996 * 180.17003 * 22 21 20 40 40 H 1.08001 * 119.79168 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.5806 -1.6358 1.1338 6 6 1.7921 -0.1787 2.4798 7 7 1.1241 0.9479 2.5976 8 14 2.4142 -1.0597 4.0050 9 1 3.8934 -1.1737 3.9422 10 1 2.0276 -0.2889 5.2141 11 1 1.8155 -2.4170 4.0715 12 7 2.0197 -0.6925 -1.1994 13 6 3.4831 -0.7400 -1.2172 14 6 4.0161 0.6666 -1.5166 15 6 3.6481 1.0128 -2.9612 16 1 4.2736 0.4365 -3.6429 17 6 3.8767 2.5066 -3.2000 18 7 5.3071 2.8114 -3.0617 19 6 2.1980 0.6811 -3.2088 20 6 1.5882 1.2155 -4.3331 21 6 0.2648 0.9376 -4.6109 22 6 -0.4601 0.1188 -3.7640 23 6 0.1391 -0.4152 -2.6438 24 6 1.4743 -0.1298 -2.3524 25 1 -0.3634 0.6304 -0.8115 26 1 -0.3633 -1.0181 -0.1402 27 1 -0.3633 0.3876 0.9518 28 1 0.9547 1.3217 3.4765 29 1 3.8173 -1.4303 -1.9918 30 1 3.8501 -1.0711 -0.2458 31 1 5.0995 0.6833 -1.3981 32 1 3.5593 1.3863 -0.8372 33 1 3.5448 2.7689 -4.2047 34 1 3.3101 3.0825 -2.4683 35 1 5.8521 2.3059 -3.7441 36 1 5.4735 3.8042 -3.1298 37 1 2.1525 1.8542 -4.9964 38 1 -0.2036 1.3580 -5.4886 39 1 -1.4948 -0.1023 -3.9808 40 1 -0.4292 -1.0546 -1.9845 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719616785.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:14 Heat of formation + Delta-G solvation = 32.588321 kcal Electronic energy + Delta-G solvation = -20390.317201 eV Core-core repulsion = 17590.512849 eV Total energy + Delta-G solvation = -2799.804352 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.21903 -36.47682 -35.94314 -33.14252 -31.95611 -29.83633 -29.44514 -28.66040 -25.25522 -25.11933 -22.80778 -22.20226 -21.29674 -20.43160 -18.54296 -16.33860 -16.16347 -15.80099 -15.45750 -15.17072 -14.52139 -14.27947 -13.87124 -13.45707 -13.29799 -13.24425 -12.58099 -12.23666 -12.13088 -11.93779 -11.59415 -11.33825 -11.03997 -10.90347 -10.80563 -10.65915 -10.46145 -10.23121 -10.11428 -9.99785 -9.64417 -9.05494 -8.65081 -8.50191 -8.29798 -8.16322 -6.92220 -6.04631 -4.09429 1.88156 1.97103 3.31609 3.36051 3.38759 4.23936 4.40329 4.59743 4.86986 5.09303 5.23871 5.27837 5.33494 5.48679 5.49616 5.65955 5.73764 5.87363 5.96341 6.08638 6.20271 6.27036 6.34438 6.53544 6.60107 6.68229 6.79140 6.88404 6.90808 6.96296 7.02671 7.08526 7.14884 7.19743 7.38682 7.45865 7.50714 7.76240 7.83298 8.15152 8.23784 8.63491 8.96192 9.55298 11.02812 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020070 B = 0.007490 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.773714 B = 3737.352237 C = 4623.226523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.222 3.778 3 H 0.015 0.985 4 C -0.508 4.508 5 H 0.064 0.936 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.499 5.499 13 C 0.061 3.939 14 C -0.135 4.135 15 C -0.037 4.037 16 H 0.069 0.931 17 C 0.072 3.928 18 N -0.847 5.847 19 C -0.131 4.131 20 C -0.110 4.110 21 C -0.156 4.156 22 C -0.117 4.117 23 C -0.121 4.121 24 C 0.144 3.856 25 H 0.020 0.980 26 H 0.036 0.964 27 H 0.079 0.921 28 H 0.262 0.738 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.026 0.974 34 H 0.073 0.927 35 H 0.336 0.664 36 H 0.339 0.661 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.833 1.922 -12.438 12.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.119 3.881 3 H 0.033 0.967 4 C -0.547 4.547 5 H 0.082 0.918 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.214 5.214 13 C -0.067 4.067 14 C -0.174 4.174 15 C -0.056 4.056 16 H 0.087 0.913 17 C -0.059 4.059 18 N -0.376 5.376 19 C -0.135 4.135 20 C -0.129 4.129 21 C -0.175 4.175 22 C -0.135 4.135 23 C -0.141 4.141 24 C 0.045 3.955 25 H 0.039 0.961 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.091 0.909 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.552 1.242 -11.436 11.783 hybrid contribution 0.389 0.757 -0.226 0.880 sum 2.941 1.999 -11.661 12.191 Atomic orbital electron populations 1.22114 0.97935 0.98483 1.01079 1.19310 0.92185 0.92505 0.84092 0.96732 1.21059 1.35417 1.08403 0.89773 0.91827 1.24916 0.95191 0.94955 0.98965 1.69921 1.40090 1.19028 1.23869 0.86581 0.79265 0.79637 0.82073 1.20224 1.21354 1.20214 1.58944 1.08505 1.52059 1.01915 1.22134 0.86779 0.95176 1.02574 1.22042 1.01488 0.99228 0.94639 1.19981 0.92162 0.94940 0.98475 0.91257 1.21887 0.88652 0.96294 0.99055 1.58606 1.07678 1.12662 1.58631 1.19842 0.96565 0.99274 0.97797 1.20834 0.95012 1.00147 0.96865 1.20808 0.94673 1.01626 1.00365 1.20887 0.99272 0.98373 0.95017 1.21350 0.94591 1.01258 0.96925 1.18796 0.93171 0.91201 0.92304 0.96102 0.94524 0.90251 0.92827 0.92680 0.88624 0.91073 0.90854 0.95638 0.90869 0.85203 0.84935 0.87251 0.87192 0.86801 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 7.58 37.16 0.28 -3.06 16 2 C 0.22 5.53 1.76 -68.86 -0.12 5.41 16 3 H 0.02 0.42 6.55 -51.93 -0.34 0.08 16 4 C -0.51 -13.62 7.55 -34.44 -0.26 -13.88 16 5 H 0.06 1.70 6.90 -52.49 -0.36 1.34 16 6 C 0.06 1.67 5.28 -17.82 -0.09 1.58 16 7 N -0.89 -25.17 11.71 55.43 0.65 -24.52 16 8 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.50 -10.94 4.45 -165.06 -0.73 -11.67 16 13 C 0.06 1.21 5.63 -3.89 -0.02 1.19 16 14 C -0.14 -2.48 5.07 -26.52 -0.13 -2.61 16 15 C -0.04 -0.59 2.52 -91.70 -0.23 -0.82 16 16 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 17 C 0.07 0.99 5.83 -3.82 -0.02 0.97 16 18 N -0.85 -10.08 9.26 -10.36 -0.10 -10.17 16 19 C -0.13 -2.32 5.41 -104.38 -0.56 -2.88 16 20 C -0.11 -1.71 9.05 -39.51 -0.36 -2.07 16 21 C -0.16 -2.33 10.05 -39.62 -0.40 -2.73 16 22 C -0.12 -1.87 10.03 -39.71 -0.40 -2.26 16 23 C -0.12 -2.28 7.16 -39.23 -0.28 -2.56 16 24 C 0.14 2.89 4.91 -83.85 -0.41 2.48 16 25 H 0.02 0.46 5.98 -51.93 -0.31 0.15 16 26 H 0.04 0.85 7.00 -51.93 -0.36 0.48 16 27 H 0.08 2.11 6.36 -51.93 -0.33 1.78 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.05 1.00 8.11 -51.93 -0.42 0.58 16 30 H 0.10 2.04 6.17 -51.93 -0.32 1.72 16 31 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 32 H 0.07 1.58 6.38 -51.93 -0.33 1.25 16 33 H 0.03 0.32 6.33 -51.92 -0.33 -0.01 16 34 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 35 H 0.34 3.40 9.05 -39.29 -0.36 3.05 16 36 H 0.34 3.37 9.08 -39.30 -0.36 3.02 16 37 H 0.11 1.44 6.44 -52.49 -0.34 1.10 16 38 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.13 2.47 5.96 -52.49 -0.31 2.16 16 LS Contribution 303.20 15.07 4.57 4.57 Total: -1.00 -28.43 303.20 -9.36 -37.79 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.72 Total: 9.17 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -3.01 Total: -21.24 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.18 Total: -46.37 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.43 -9.36 -37.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719616785.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.378 kcal (2) G-P(sol) polarization free energy of solvation -28.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds