Wall clock time and date at job start Mon Mar 30 2020 07:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46898 * 110.99761 * 2 1 4 4 C 1.50704 * 109.47200 * 180.02562 * 3 2 1 5 5 C 1.38287 * 119.92328 * 269.73219 * 4 3 2 6 6 C 1.38104 * 120.07307 * 179.72335 * 5 4 3 7 7 C 1.38912 * 119.92517 * 0.54337 * 6 5 4 8 8 N 1.39667 * 120.07480 * 179.74988 * 7 6 5 9 9 C 1.46496 * 120.00124 * 90.65164 * 8 7 6 10 10 C 1.50703 * 109.47422 * 89.99886 * 9 8 7 11 11 H 1.07999 * 119.99790 * 0.02562 * 10 9 8 12 12 C 1.37872 * 119.99950 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00208 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99828 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46674 * 60.00309 * 14 12 10 16 16 H 1.48497 * 109.46903 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47151 * 300.00032 * 14 12 10 18 18 C 1.46505 * 119.99779 * 270.64878 * 8 7 6 19 19 C 1.52995 * 117.50117 * 3.35404 * 18 8 7 20 20 C 1.53002 * 117.49939 * 294.69233 * 18 8 7 21 21 C 1.38908 * 119.84742 * 359.72732 * 7 6 5 22 22 C 1.38109 * 119.93049 * 0.02562 * 21 7 6 23 23 H 1.08995 * 109.46594 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46612 * 299.99977 * 1 2 3 25 25 H 1.08997 * 109.47040 * 59.99787 * 1 2 3 26 26 H 1.00905 * 111.00012 * 236.04628 * 2 1 3 27 27 H 1.09003 * 109.47523 * 300.00107 * 3 2 1 28 28 H 1.08998 * 109.47655 * 60.00217 * 3 2 1 29 29 H 1.08005 * 119.96305 * 359.96881 * 5 4 3 30 30 H 1.08005 * 120.03844 * 180.26497 * 6 5 4 31 31 H 1.09009 * 109.47397 * 209.99920 * 9 8 7 32 32 H 1.09001 * 109.46945 * 329.99533 * 9 8 7 33 33 H 0.97004 * 119.99610 * 179.97438 * 13 12 10 34 34 H 1.09000 * 115.54838 * 149.02775 * 18 8 7 35 35 H 1.08996 * 117.49910 * 0.02562 * 19 18 8 36 36 H 1.09006 * 117.49899 * 145.01803 * 19 18 8 37 37 H 1.09001 * 117.49927 * 214.98228 * 20 18 8 38 38 H 1.08997 * 117.49676 * 359.97438 * 20 18 8 39 39 H 1.08003 * 120.03855 * 180.02562 * 21 7 6 40 40 H 1.07995 * 119.96582 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5020 1.3313 -0.0006 5 6 4.1922 1.3183 1.1976 6 6 5.5726 1.2758 1.2007 7 6 6.2680 1.2575 -0.0017 8 7 7.6642 1.2198 -0.0023 9 6 8.3621 -0.0682 -0.0174 10 6 8.6014 -0.4932 -1.4434 11 1 8.2673 0.1336 -2.2569 12 6 9.2477 -1.6817 -1.7092 13 7 9.6549 -2.4447 -0.7185 14 14 9.5436 -2.2088 -3.4768 15 1 10.3729 -1.1876 -4.1655 16 1 10.2512 -3.5143 -3.4920 17 1 8.2414 -2.3440 -4.1776 18 6 8.4306 2.4682 0.0123 19 6 7.6457 3.7781 0.1070 20 6 8.3170 3.3813 -1.2102 21 6 5.5716 1.2763 -1.2035 22 6 4.1910 1.3136 -1.1994 23 1 -0.3632 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8307 -0.5261 -0.7814 27 1 1.6459 1.8948 -0.8900 28 1 1.6460 1.8948 0.8900 29 1 3.6510 1.3375 2.1321 30 1 6.1110 1.2614 2.1368 31 1 9.3179 0.0304 0.4975 32 1 7.7528 -0.8176 0.4878 33 1 10.1093 -3.2811 -0.9057 34 1 9.3952 2.4218 0.5178 35 1 6.5591 3.7110 0.1590 36 1 8.0940 4.5935 0.6747 37 1 9.2067 3.9358 -1.5086 38 1 7.6723 3.0528 -2.0254 39 1 6.1092 1.2616 -2.1401 40 1 3.6490 1.3278 -2.1334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723177033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:52 Heat of formation + Delta-G solvation = 64.715497 kcal Electronic energy + Delta-G solvation = -19234.193769 eV Core-core repulsion = 16435.782556 eV Total energy + Delta-G solvation = -2798.411213 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.27175 -37.24341 -35.61274 -33.61841 -32.18158 -30.42938 -30.01062 -27.00192 -25.56639 -23.50357 -22.29620 -22.28123 -21.66473 -21.29049 -19.34961 -16.52765 -16.27679 -15.86127 -15.42693 -15.16374 -14.66012 -14.40052 -14.27038 -13.82640 -13.60782 -12.94146 -12.78381 -12.44509 -12.13884 -12.06111 -11.99694 -11.56078 -11.25102 -11.06243 -11.00096 -10.82470 -10.71281 -10.40745 -10.20602 -10.06189 -9.65019 -9.34500 -8.56927 -8.40248 -8.36909 -7.93549 -6.76460 -5.92176 -4.00937 1.79672 1.94274 3.33993 3.38437 3.40888 4.08950 4.27183 4.49604 4.52866 4.54026 4.99291 5.10960 5.27205 5.35060 5.35429 5.43297 5.48975 5.54585 5.55153 5.64026 5.69820 5.72237 5.97064 6.07805 6.16124 6.27192 6.35650 6.53720 6.57678 6.68240 6.74884 6.91302 7.00815 7.23586 7.28035 7.29639 7.43420 7.53526 7.95143 8.37356 8.52137 8.81810 9.10045 9.65278 11.10185 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016148 B = 0.005947 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.571759 B = 4707.151657 C = 5732.178789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.691 5.691 3 C 0.105 3.895 4 C -0.110 4.110 5 C -0.096 4.096 6 C -0.134 4.134 7 C 0.211 3.789 8 N -0.651 5.651 9 C 0.277 3.723 10 C -0.523 4.523 11 H 0.057 0.943 12 C 0.058 3.942 13 N -0.899 5.899 14 Si 0.891 3.109 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.279 1.279 18 C 0.140 3.860 19 C -0.205 4.205 20 C -0.211 4.211 21 C -0.120 4.120 22 C -0.113 4.113 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.019 0.981 26 H 0.345 0.655 27 H 0.033 0.967 28 H 0.075 0.925 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.024 0.976 32 H 0.022 0.978 33 H 0.262 0.738 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.121 0.879 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.496 9.314 1.823 15.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.322 5.322 3 C -0.024 4.024 4 C -0.110 4.110 5 C -0.115 4.115 6 C -0.154 4.154 7 C 0.118 3.882 8 N -0.375 5.375 9 C 0.158 3.842 10 C -0.562 4.562 11 H 0.075 0.925 12 C -0.143 4.143 13 N -0.539 5.539 14 Si 0.719 3.281 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.204 1.204 18 C 0.033 3.967 19 C -0.244 4.244 20 C -0.251 4.251 21 C -0.140 4.140 22 C -0.132 4.132 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.037 0.963 26 H 0.163 0.837 27 H 0.051 0.949 28 H 0.094 0.906 29 H 0.132 0.868 30 H 0.136 0.864 31 H 0.042 0.958 32 H 0.040 0.960 33 H 0.071 0.929 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.139 0.861 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.324 9.003 2.572 15.478 hybrid contribution 0.025 -0.173 -2.110 2.117 sum -12.299 8.830 0.463 15.148 Atomic orbital electron populations 1.22199 0.88124 1.01786 1.00117 1.60437 1.07118 1.14047 1.50578 1.20822 0.91420 0.89564 1.00551 1.19519 0.94076 1.03954 0.93458 1.20752 0.93624 1.00163 0.96981 1.21644 0.93863 1.01413 0.98457 1.17412 0.85083 0.94561 0.91161 1.45855 0.99532 1.04062 1.88036 1.18908 0.91359 0.78074 0.95873 1.21706 1.36552 1.04604 0.93357 0.92511 1.24963 0.95848 0.96508 0.96949 1.69925 1.40069 1.13037 1.30851 0.86674 0.78282 0.77711 0.85408 1.20347 1.21349 1.20422 1.21085 0.95427 0.81410 0.98735 1.23236 0.99778 0.99471 1.01867 1.23402 1.02535 1.06226 0.92929 1.21749 0.93546 0.99646 0.99075 1.20842 0.94183 1.01434 0.96746 0.91475 0.91850 0.96287 0.83684 0.94897 0.90648 0.86754 0.86428 0.95804 0.96039 0.92874 0.87243 0.89276 0.89403 0.89666 0.89337 0.86126 0.87233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.70 60.07 0.64 0.90 16 2 N -0.69 -8.24 6.84 -122.42 -0.84 -9.08 16 3 C 0.10 1.25 5.81 -4.98 -0.03 1.22 16 4 C -0.11 -1.60 5.39 -104.59 -0.56 -2.17 16 5 C -0.10 -1.48 9.69 -39.61 -0.38 -1.86 16 6 C -0.13 -2.35 9.89 -39.38 -0.39 -2.74 16 7 C 0.21 4.12 3.50 -83.79 -0.29 3.83 16 8 N -0.65 -13.87 2.72 -165.54 -0.45 -14.32 16 9 C 0.28 7.13 5.48 -5.19 -0.03 7.10 16 10 C -0.52 -14.51 9.39 -34.44 -0.32 -14.83 16 11 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -26.56 13.29 55.43 0.74 -25.83 16 14 Si 0.89 21.74 29.54 -169.99 -5.02 16.71 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 C 0.14 2.60 6.57 -67.93 -0.45 2.16 16 19 C -0.21 -3.20 9.84 -26.70 -0.26 -3.46 16 20 C -0.21 -3.56 10.37 -26.69 -0.28 -3.84 16 21 C -0.12 -2.24 9.84 -39.38 -0.39 -2.63 16 22 C -0.11 -1.77 9.69 -39.61 -0.38 -2.16 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.35 4.12 8.81 -39.29 -0.35 3.78 16 27 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 28 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 29 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 30 H 0.12 2.00 8.06 -52.48 -0.42 1.57 16 31 H 0.02 0.65 8.07 -51.92 -0.42 0.23 16 32 H 0.02 0.60 8.05 -51.93 -0.42 0.19 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 35 H 0.09 1.45 7.00 -51.93 -0.36 1.09 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.09 1.60 7.94 -51.93 -0.41 1.19 16 39 H 0.12 2.38 7.98 -52.48 -0.42 1.97 16 40 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 338.50 15.07 5.10 5.10 Total: -1.00 -29.33 338.50 -10.26 -39.59 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -6.57 Total: 4.74 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -3.22 Total: -16.92 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.55 Total: -49.22 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.33 -10.26 -39.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723177033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.308 kcal (2) G-P(sol) polarization free energy of solvation -29.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds