Wall clock time and date at job start Mon Mar 30 2020 07:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46898 * 110.99761 * 2 1 4 4 C 1.50704 * 109.47200 * 180.02562 * 3 2 1 5 5 C 1.38287 * 119.92328 * 269.73219 * 4 3 2 6 6 C 1.38104 * 120.07307 * 179.72335 * 5 4 3 7 7 C 1.38912 * 119.92517 * 0.54337 * 6 5 4 8 8 N 1.39667 * 120.07480 * 179.74988 * 7 6 5 9 9 C 1.46496 * 120.00124 * 90.65164 * 8 7 6 10 10 C 1.50703 * 109.47422 * 89.99886 * 9 8 7 11 11 H 1.07999 * 119.99790 * 0.02562 * 10 9 8 12 12 C 1.37872 * 119.99950 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00208 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99828 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46674 * 60.00309 * 14 12 10 16 16 H 1.48497 * 109.46903 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47151 * 300.00032 * 14 12 10 18 18 C 1.46505 * 119.99779 * 270.64878 * 8 7 6 19 19 C 1.52995 * 117.50117 * 3.35404 * 18 8 7 20 20 C 1.53002 * 117.49939 * 294.69233 * 18 8 7 21 21 C 1.38908 * 119.84742 * 359.72732 * 7 6 5 22 22 C 1.38109 * 119.93049 * 0.02562 * 21 7 6 23 23 H 1.08995 * 109.46594 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46612 * 299.99977 * 1 2 3 25 25 H 1.08997 * 109.47040 * 59.99787 * 1 2 3 26 26 H 1.00905 * 111.00012 * 236.04628 * 2 1 3 27 27 H 1.09003 * 109.47523 * 300.00107 * 3 2 1 28 28 H 1.08998 * 109.47655 * 60.00217 * 3 2 1 29 29 H 1.08005 * 119.96305 * 359.96881 * 5 4 3 30 30 H 1.08005 * 120.03844 * 180.26497 * 6 5 4 31 31 H 1.09009 * 109.47397 * 209.99920 * 9 8 7 32 32 H 1.09001 * 109.46945 * 329.99533 * 9 8 7 33 33 H 0.97004 * 119.99610 * 179.97438 * 13 12 10 34 34 H 1.09000 * 115.54838 * 149.02775 * 18 8 7 35 35 H 1.08996 * 117.49910 * 0.02562 * 19 18 8 36 36 H 1.09006 * 117.49899 * 145.01803 * 19 18 8 37 37 H 1.09001 * 117.49927 * 214.98228 * 20 18 8 38 38 H 1.08997 * 117.49676 * 359.97438 * 20 18 8 39 39 H 1.08003 * 120.03855 * 180.02562 * 21 7 6 40 40 H 1.07995 * 119.96582 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5020 1.3313 -0.0006 5 6 4.1922 1.3183 1.1976 6 6 5.5726 1.2758 1.2007 7 6 6.2680 1.2575 -0.0017 8 7 7.6642 1.2198 -0.0023 9 6 8.3621 -0.0682 -0.0174 10 6 8.6014 -0.4932 -1.4434 11 1 8.2673 0.1336 -2.2569 12 6 9.2477 -1.6817 -1.7092 13 7 9.6549 -2.4447 -0.7185 14 14 9.5436 -2.2088 -3.4768 15 1 10.3729 -1.1876 -4.1655 16 1 10.2512 -3.5143 -3.4920 17 1 8.2414 -2.3440 -4.1776 18 6 8.4306 2.4682 0.0123 19 6 7.6457 3.7781 0.1070 20 6 8.3170 3.3813 -1.2102 21 6 5.5716 1.2763 -1.2035 22 6 4.1910 1.3136 -1.1994 23 1 -0.3632 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8307 -0.5261 -0.7814 27 1 1.6459 1.8948 -0.8900 28 1 1.6460 1.8948 0.8900 29 1 3.6510 1.3375 2.1321 30 1 6.1110 1.2614 2.1368 31 1 9.3179 0.0304 0.4975 32 1 7.7528 -0.8176 0.4878 33 1 10.1093 -3.2811 -0.9057 34 1 9.3952 2.4218 0.5178 35 1 6.5591 3.7110 0.1590 36 1 8.0940 4.5935 0.6747 37 1 9.2067 3.9358 -1.5086 38 1 7.6723 3.0528 -2.0254 39 1 6.1092 1.2616 -2.1401 40 1 3.6490 1.3278 -2.1334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723177033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:51 Heat of formation + Delta-G solvation = 48.139055 kcal Electronic energy + Delta-G solvation = -19234.912578 eV Core-core repulsion = 16435.782556 eV Total energy + Delta-G solvation = -2799.130021 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.62166 -38.56175 -36.64220 -35.46256 -33.94119 -31.75132 -31.42301 -28.69702 -26.87558 -24.64554 -24.10669 -23.60845 -22.96812 -22.57771 -20.77316 -18.52309 -17.60034 -17.21094 -17.04587 -16.42180 -16.15813 -15.69216 -15.39135 -15.16281 -14.80201 -14.41465 -14.27656 -14.03554 -13.69359 -13.25174 -13.04475 -12.99767 -12.82994 -12.57123 -12.51723 -12.30245 -12.21980 -12.13458 -11.87463 -11.62753 -11.30308 -11.08903 -10.56808 -9.73920 -9.48036 -9.20766 -8.53439 -7.97194 -6.26719 0.48038 0.60797 1.38310 1.40276 1.48239 2.39376 2.76230 2.86262 3.13145 3.16227 3.55898 3.95184 4.03228 4.08885 4.15768 4.22862 4.29496 4.43906 4.56748 4.63543 4.66557 4.72330 4.81543 4.88262 4.93373 4.98316 5.06522 5.15733 5.21849 5.23751 5.30351 5.34833 5.48530 5.73002 5.74640 5.93000 6.03475 6.12561 6.24925 6.40638 6.63615 6.97885 7.25428 7.47165 8.92133 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016148 B = 0.005947 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.571759 B = 4707.151657 C = 5732.178789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.708 5.708 3 C 0.109 3.891 4 C -0.099 4.099 5 C -0.091 4.091 6 C -0.143 4.143 7 C 0.181 3.819 8 N -0.656 5.656 9 C 0.295 3.705 10 C -0.531 4.531 11 H 0.051 0.949 12 C 0.007 3.993 13 N -0.932 5.932 14 Si 0.958 3.042 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.273 1.273 18 C 0.105 3.895 19 C -0.170 4.170 20 C -0.208 4.208 21 C -0.139 4.139 22 C -0.108 4.108 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.029 0.971 26 H 0.343 0.657 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.139 0.861 30 H 0.116 0.884 31 H 0.001 0.999 32 H -0.011 1.011 33 H 0.264 0.736 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.420 10.457 1.242 17.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.338 5.338 3 C -0.019 4.019 4 C -0.100 4.100 5 C -0.110 4.110 6 C -0.163 4.163 7 C 0.089 3.911 8 N -0.380 5.380 9 C 0.174 3.826 10 C -0.571 4.571 11 H 0.069 0.931 12 C -0.191 4.191 13 N -0.573 5.573 14 Si 0.783 3.217 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.199 1.199 18 C -0.001 4.001 19 C -0.208 4.208 20 C -0.248 4.248 21 C -0.159 4.159 22 C -0.127 4.127 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.047 0.953 26 H 0.160 0.840 27 H 0.066 0.934 28 H 0.107 0.893 29 H 0.157 0.843 30 H 0.134 0.866 31 H 0.019 0.981 32 H 0.007 0.993 33 H 0.073 0.927 34 H 0.126 0.874 35 H 0.102 0.898 36 H 0.136 0.864 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.118 0.882 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.271 10.183 1.992 17.645 hybrid contribution 0.539 -0.507 -1.883 2.023 sum -13.733 9.676 0.110 16.799 Atomic orbital electron populations 1.22244 0.86393 1.02530 1.00919 1.60441 1.08826 1.13863 1.50719 1.20824 0.89029 0.90060 1.01978 1.19855 0.95891 1.01641 0.92571 1.21038 0.92699 0.98818 0.98488 1.21684 0.94992 1.02017 0.97637 1.17611 0.84242 0.96936 0.92293 1.45590 1.00497 1.03314 1.88556 1.18380 0.90053 0.79827 0.94385 1.21941 1.36369 1.04757 0.94015 0.93086 1.25795 0.95542 0.96525 1.01204 1.70049 1.40779 1.13454 1.33021 0.85620 0.78343 0.77513 0.80238 1.19498 1.20682 1.19876 1.21284 0.96212 0.81689 1.00899 1.23213 0.99266 0.97828 1.00491 1.23381 1.03194 1.05676 0.92561 1.21669 0.94921 1.01439 0.97870 1.21060 0.92974 1.00293 0.98418 0.90864 0.91166 0.95260 0.83984 0.93428 0.89285 0.84287 0.86599 0.98056 0.99298 0.92721 0.87449 0.89776 0.86380 0.87804 0.90979 0.88245 0.84932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.70 127.69 1.37 1.80 16 2 N -0.71 -14.94 6.84 -541.22 -3.70 -18.65 16 3 C 0.11 2.25 5.81 85.56 0.50 2.75 16 4 C -0.10 -2.69 5.39 -19.84 -0.11 -2.79 16 5 C -0.09 -2.66 9.69 22.25 0.22 -2.44 16 6 C -0.14 -5.04 9.89 22.40 0.22 -4.82 16 7 C 0.18 7.28 3.50 38.21 0.13 7.41 16 8 N -0.66 -29.14 2.72 -677.66 -1.85 -30.99 16 9 C 0.29 16.04 5.48 85.63 0.47 16.50 16 10 C -0.53 -30.55 9.39 25.60 0.24 -30.31 16 11 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 12 C 0.01 0.43 5.46 84.65 0.46 0.89 16 13 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 14 Si 0.96 45.12 29.54 68.60 2.03 47.14 16 15 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 17 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 18 C 0.10 3.97 6.57 44.99 0.30 4.26 16 19 C -0.17 -5.09 9.84 30.62 0.30 -4.79 16 20 C -0.21 -6.97 10.37 30.62 0.32 -6.65 16 21 C -0.14 -5.27 9.84 22.40 0.22 -5.05 16 22 C -0.11 -3.28 9.69 22.25 0.22 -3.06 16 23 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.34 7.43 8.81 -89.69 -0.79 6.64 16 27 H 0.05 0.86 8.08 -2.39 -0.02 0.84 16 28 H 0.09 1.62 8.08 -2.39 -0.02 1.60 16 29 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 30 H 0.12 4.01 8.06 -2.91 -0.02 3.99 16 31 H 0.00 0.08 8.07 -2.38 -0.02 0.06 16 32 H -0.01 -0.66 8.05 -2.39 -0.02 -0.68 16 33 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 34 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 35 H 0.08 2.64 7.00 -2.39 -0.02 2.63 16 36 H 0.12 2.83 8.14 -2.38 -0.02 2.81 16 37 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 38 H 0.07 2.65 7.94 -2.39 -0.02 2.63 16 39 H 0.10 4.11 7.98 -2.91 -0.02 4.09 16 40 H 0.13 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -64.66 338.50 1.83 -62.83 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.21 Total: 22.23 kcal Atomic # 6 Polarization: -31.15 SS G_CDS: 4.85 Total: -26.30 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -5.26 Total: -105.90 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -64.66 1.83 -62.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723177033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.970 kcal (2) G-P(sol) polarization free energy of solvation -64.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds