Wall clock time and date at job start Mon Mar 30 2020 07:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46899 * 110.99529 * 2 1 4 4 C 1.50707 * 109.46455 * 180.02562 * 3 2 1 5 5 C 1.38129 * 120.03490 * 260.25391 * 4 3 2 6 6 C 1.38263 * 120.07258 * 180.27907 * 5 4 3 7 7 C 1.38313 * 120.14785 * 359.73917 * 6 5 4 8 8 C 1.38084 * 120.07701 * 359.97438 * 7 6 5 9 9 C 1.38892 * 120.03914 * 80.00129 * 4 3 2 10 10 N 1.39678 * 120.07291 * 359.97438 * 9 4 3 11 11 C 1.46891 * 111.00041 * 243.67763 * 10 9 4 12 12 C 1.50696 * 109.47337 * 162.70119 * 11 10 9 13 13 H 1.08005 * 119.99894 * 354.49289 * 12 11 10 14 14 C 1.37875 * 120.00216 * 174.49516 * 12 11 10 15 15 N 1.31511 * 120.00265 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99857 * 179.72286 * 14 12 11 17 17 H 1.48499 * 109.47051 * 60.00554 * 16 14 12 18 18 H 1.48509 * 109.47260 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47470 * 299.99927 * 16 14 12 20 20 C 1.46894 * 110.99726 * 119.72595 * 10 9 4 21 21 C 1.53010 * 117.50046 * 266.44518 * 20 10 9 22 22 C 1.53000 * 59.99921 * 252.50939 * 21 20 10 23 23 H 1.09002 * 109.47050 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47174 * 300.00067 * 1 2 3 25 25 H 1.08999 * 109.47196 * 59.99893 * 1 2 3 26 26 H 1.00901 * 110.99527 * 236.04691 * 2 1 3 27 27 H 1.08996 * 109.47805 * 59.99913 * 3 2 1 28 28 H 1.08995 * 109.47394 * 299.99834 * 3 2 1 29 29 H 1.07998 * 119.96381 * 0.02562 * 5 4 3 30 30 H 1.07993 * 119.92770 * 179.76438 * 6 5 4 31 31 H 1.07996 * 119.96077 * 179.97438 * 7 6 5 32 32 H 1.07998 * 120.03712 * 179.97438 * 8 7 6 33 33 H 1.08999 * 109.47290 * 42.70192 * 11 10 9 34 34 H 1.09002 * 109.47590 * 282.70136 * 11 10 9 35 35 H 0.97000 * 120.00211 * 180.02562 * 15 14 12 36 36 H 1.09003 * 115.55467 * 52.14973 * 20 10 9 37 37 H 1.09000 * 117.49496 * 0.02562 * 21 20 10 38 38 H 1.08998 * 117.50042 * 145.01823 * 21 20 10 39 39 H 1.08999 * 117.49944 * 252.50879 * 22 21 20 40 40 H 1.08999 * 117.49602 * 107.48897 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5019 1.3312 -0.0006 5 6 4.1990 1.5149 1.1777 6 6 5.5812 1.4839 1.1770 7 6 6.2705 1.2636 -0.0017 8 6 5.5798 1.0733 -1.1821 9 6 4.1909 1.1041 -1.1851 10 7 3.4890 0.9122 -2.3773 11 6 3.7182 -0.4367 -2.9118 12 6 2.6531 -0.7625 -3.9269 13 1 1.8332 -0.0781 -4.0880 14 6 2.7251 -1.9343 -4.6498 15 7 3.7230 -2.7680 -4.4533 16 14 1.4006 -2.3418 -5.9025 17 1 1.3588 -1.2814 -6.9413 18 1 1.7069 -3.6478 -6.5398 19 1 0.0831 -2.4205 -5.2221 20 6 3.8429 1.9379 -3.3675 21 6 2.9609 3.1862 -3.4378 22 6 2.8918 2.1371 -4.5493 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8306 -0.5261 -0.7814 27 1 1.6459 1.8949 0.8899 28 1 1.6459 1.8948 -0.8899 29 1 3.6637 1.6870 2.0998 30 1 6.1239 1.6316 2.0989 31 1 7.3503 1.2403 0.0012 32 1 6.1187 0.9017 -2.1022 33 1 3.6788 -1.1613 -2.0986 34 1 4.6980 -0.4774 -3.3876 35 1 3.7739 -3.5922 -4.9622 36 1 4.9096 2.0640 -3.5531 37 1 2.1182 3.2464 -2.7490 38 1 3.4472 4.1338 -3.6695 39 1 3.3327 2.3944 -5.5123 40 1 2.0034 1.5070 -4.5920 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723181092.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:55 Heat of formation + Delta-G solvation = 63.916110 kcal Electronic energy + Delta-G solvation = -20100.677550 eV Core-core repulsion = 17302.231673 eV Total energy + Delta-G solvation = -2798.445877 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.59543 -37.04797 -35.36490 -33.73277 -32.49704 -31.02540 -29.10010 -26.75519 -25.78422 -22.99871 -22.61298 -22.21492 -21.63935 -20.50124 -19.40691 -17.02284 -16.20085 -15.50489 -15.16990 -14.89377 -14.56056 -14.26335 -14.02890 -13.83589 -13.45132 -13.24063 -12.64190 -12.15487 -12.06098 -11.93347 -11.70500 -11.50794 -11.21980 -11.04069 -10.90718 -10.86358 -10.66007 -10.55756 -10.04997 -9.79680 -9.27374 -9.21957 -8.46129 -8.42697 -8.14492 -7.82351 -7.52537 -6.05588 -4.07059 1.78033 1.81171 3.29657 3.34919 3.36391 4.13174 4.35604 4.50937 4.66835 5.00419 5.25643 5.29381 5.31358 5.43034 5.58395 5.63404 5.67993 5.72507 5.83474 5.86032 5.94734 6.01059 6.09208 6.19843 6.22540 6.24463 6.37070 6.50483 6.62356 6.85255 6.86668 6.89567 7.02297 7.17375 7.32071 7.39973 7.50199 7.81692 7.94417 8.04333 8.13941 8.55470 8.98528 9.56327 11.04706 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017270 B = 0.007398 C = 0.006833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.942073 B = 3783.849780 C = 4096.901679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.691 5.691 3 C 0.114 3.886 4 C -0.069 4.069 5 C -0.102 4.102 6 C -0.139 4.139 7 C -0.115 4.115 8 C -0.151 4.151 9 C 0.125 3.875 10 N -0.482 5.482 11 C 0.204 3.796 12 C -0.504 4.504 13 H 0.067 0.933 14 C 0.058 3.942 15 N -0.896 5.896 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.030 3.970 21 C -0.185 4.185 22 C -0.149 4.149 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.021 0.979 26 H 0.362 0.638 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.028 0.972 34 H 0.001 0.999 35 H 0.262 0.738 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.141 9.510 7.263 11.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.324 5.324 3 C -0.015 4.015 4 C -0.070 4.070 5 C -0.121 4.121 6 C -0.157 4.157 7 C -0.134 4.134 8 C -0.171 4.171 9 C 0.030 3.970 10 N -0.204 5.204 11 C 0.082 3.918 12 C -0.543 4.543 13 H 0.085 0.915 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.722 3.278 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.077 4.077 21 C -0.222 4.222 22 C -0.186 4.186 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.039 0.961 26 H 0.182 0.818 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.046 0.954 34 H 0.019 0.981 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.554 9.269 7.949 12.223 hybrid contribution 0.206 -0.271 -1.854 1.885 sum -0.348 8.998 6.095 10.873 Atomic orbital electron populations 1.22098 0.88762 1.01417 0.99492 1.60582 1.06873 1.13416 1.51518 1.20608 0.90180 0.90693 1.00042 1.19685 0.95363 1.00033 0.91941 1.20869 0.93902 1.00337 0.96998 1.20970 0.94296 1.02821 0.97642 1.20941 0.99233 1.00432 0.92770 1.21742 0.95216 1.01705 0.98413 1.18924 0.90057 0.95964 0.92049 1.59636 1.54543 1.05250 1.00991 1.19758 0.96439 0.81012 0.94636 1.21137 1.08680 1.04421 1.20032 0.91484 1.24957 0.95836 0.96316 0.97286 1.69944 1.30806 1.11173 1.41576 0.86629 0.82116 0.77540 0.81529 1.20268 1.21408 1.20264 1.22053 0.93903 0.94465 0.97320 1.23016 1.02977 0.92735 1.03509 1.23055 1.02973 1.00572 0.91964 0.91854 0.92773 0.96056 0.81760 0.92023 0.93445 0.86444 0.86769 0.86888 0.86585 0.95396 0.98098 0.92861 0.90890 0.89165 0.90048 0.89913 0.86844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.70 60.07 0.64 1.13 16 2 N -0.69 -12.24 6.84 -122.41 -0.84 -13.07 16 3 C 0.11 1.88 5.44 -4.97 -0.03 1.85 16 4 C -0.07 -1.20 5.41 -104.42 -0.56 -1.76 16 5 C -0.10 -1.55 9.66 -39.61 -0.38 -1.94 16 6 C -0.14 -2.00 10.04 -39.54 -0.40 -2.40 16 7 C -0.11 -1.77 10.04 -39.61 -0.40 -2.17 16 8 C -0.15 -2.72 8.70 -39.38 -0.34 -3.06 16 9 C 0.12 2.38 4.59 -83.79 -0.38 2.00 16 10 N -0.48 -9.90 3.54 -164.93 -0.58 -10.49 16 11 C 0.20 5.06 4.08 -4.98 -0.02 5.04 16 12 C -0.50 -13.19 8.05 -34.44 -0.28 -13.47 16 13 H 0.07 1.72 5.47 -52.48 -0.29 1.43 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -25.84 13.29 55.43 0.74 -25.11 16 16 Si 0.89 21.01 29.54 -169.99 -5.02 15.98 16 17 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 20 C 0.03 0.58 4.57 -67.71 -0.31 0.27 16 21 C -0.18 -3.01 10.46 -26.73 -0.28 -3.29 16 22 C -0.15 -2.72 9.38 -26.73 -0.25 -2.97 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.36 7.45 8.26 -39.29 -0.32 7.13 16 27 H 0.06 0.90 8.01 -51.93 -0.42 0.48 16 28 H 0.05 0.84 7.59 -51.93 -0.39 0.44 16 29 H 0.12 1.53 8.04 -52.49 -0.42 1.11 16 30 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.12 2.13 7.47 -52.49 -0.39 1.74 16 33 H 0.03 0.76 7.79 -51.93 -0.40 0.36 16 34 H 0.00 0.03 7.87 -51.93 -0.41 -0.38 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.07 1.39 7.36 -51.93 -0.38 1.01 16 37 H 0.09 1.48 7.94 -51.93 -0.41 1.07 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.11 2.31 5.65 -51.93 -0.29 2.01 16 LS Contribution 327.72 15.07 4.94 4.94 Total: -1.00 -27.76 327.72 -10.09 -37.85 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -6.23 Total: 9.17 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -3.09 Total: -19.28 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.68 Total: -48.67 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.76 -10.09 -37.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723181092.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.769 kcal (2) G-P(sol) polarization free energy of solvation -27.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds