Wall clock time and date at job start Mon Mar 30 2020 07:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46899 * 110.99529 * 2 1 4 4 C 1.50707 * 109.46455 * 180.02562 * 3 2 1 5 5 C 1.38129 * 120.03490 * 260.25391 * 4 3 2 6 6 C 1.38263 * 120.07258 * 180.27907 * 5 4 3 7 7 C 1.38313 * 120.14785 * 359.73917 * 6 5 4 8 8 C 1.38084 * 120.07701 * 359.97438 * 7 6 5 9 9 C 1.38892 * 120.03914 * 80.00129 * 4 3 2 10 10 N 1.39678 * 120.07291 * 359.97438 * 9 4 3 11 11 C 1.46891 * 111.00041 * 243.67763 * 10 9 4 12 12 C 1.50696 * 109.47337 * 162.70119 * 11 10 9 13 13 H 1.08005 * 119.99894 * 354.49289 * 12 11 10 14 14 C 1.37875 * 120.00216 * 174.49516 * 12 11 10 15 15 N 1.31511 * 120.00265 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99857 * 179.72286 * 14 12 11 17 17 H 1.48499 * 109.47051 * 60.00554 * 16 14 12 18 18 H 1.48509 * 109.47260 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47470 * 299.99927 * 16 14 12 20 20 C 1.46894 * 110.99726 * 119.72595 * 10 9 4 21 21 C 1.53010 * 117.50046 * 266.44518 * 20 10 9 22 22 C 1.53000 * 59.99921 * 252.50939 * 21 20 10 23 23 H 1.09002 * 109.47050 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47174 * 300.00067 * 1 2 3 25 25 H 1.08999 * 109.47196 * 59.99893 * 1 2 3 26 26 H 1.00901 * 110.99527 * 236.04691 * 2 1 3 27 27 H 1.08996 * 109.47805 * 59.99913 * 3 2 1 28 28 H 1.08995 * 109.47394 * 299.99834 * 3 2 1 29 29 H 1.07998 * 119.96381 * 0.02562 * 5 4 3 30 30 H 1.07993 * 119.92770 * 179.76438 * 6 5 4 31 31 H 1.07996 * 119.96077 * 179.97438 * 7 6 5 32 32 H 1.07998 * 120.03712 * 179.97438 * 8 7 6 33 33 H 1.08999 * 109.47290 * 42.70192 * 11 10 9 34 34 H 1.09002 * 109.47590 * 282.70136 * 11 10 9 35 35 H 0.97000 * 120.00211 * 180.02562 * 15 14 12 36 36 H 1.09003 * 115.55467 * 52.14973 * 20 10 9 37 37 H 1.09000 * 117.49496 * 0.02562 * 21 20 10 38 38 H 1.08998 * 117.50042 * 145.01823 * 21 20 10 39 39 H 1.08999 * 117.49944 * 252.50879 * 22 21 20 40 40 H 1.08999 * 117.49602 * 107.48897 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5019 1.3312 -0.0006 5 6 4.1990 1.5149 1.1777 6 6 5.5812 1.4839 1.1770 7 6 6.2705 1.2636 -0.0017 8 6 5.5798 1.0733 -1.1821 9 6 4.1909 1.1041 -1.1851 10 7 3.4890 0.9122 -2.3773 11 6 3.7182 -0.4367 -2.9118 12 6 2.6531 -0.7625 -3.9269 13 1 1.8332 -0.0781 -4.0880 14 6 2.7251 -1.9343 -4.6498 15 7 3.7230 -2.7680 -4.4533 16 14 1.4006 -2.3418 -5.9025 17 1 1.3588 -1.2814 -6.9413 18 1 1.7069 -3.6478 -6.5398 19 1 0.0831 -2.4205 -5.2221 20 6 3.8429 1.9379 -3.3675 21 6 2.9609 3.1862 -3.4378 22 6 2.8918 2.1371 -4.5493 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8306 -0.5261 -0.7814 27 1 1.6459 1.8949 0.8899 28 1 1.6459 1.8948 -0.8899 29 1 3.6637 1.6870 2.0998 30 1 6.1239 1.6316 2.0989 31 1 7.3503 1.2403 0.0012 32 1 6.1187 0.9017 -2.1022 33 1 3.6788 -1.1613 -2.0986 34 1 4.6980 -0.4774 -3.3876 35 1 3.7739 -3.5922 -4.9622 36 1 4.9096 2.0640 -3.5531 37 1 2.1182 3.2464 -2.7490 38 1 3.4472 4.1338 -3.6695 39 1 3.3327 2.3944 -5.5123 40 1 2.0034 1.5070 -4.5920 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723181092.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:54 Heat of formation + Delta-G solvation = 47.699308 kcal Electronic energy + Delta-G solvation = -20101.380764 eV Core-core repulsion = 17302.231673 eV Total energy + Delta-G solvation = -2799.149090 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.98589 -38.48635 -36.66323 -35.40570 -34.37523 -32.30501 -30.67716 -28.46086 -27.16471 -24.43894 -24.27216 -23.70530 -23.06261 -21.81952 -20.88988 -18.81084 -17.71411 -16.97294 -16.74127 -16.51813 -15.97682 -15.76294 -15.44010 -15.19997 -14.88284 -14.60250 -14.32925 -13.87004 -13.59527 -13.35521 -13.15619 -12.89569 -12.77468 -12.70312 -12.43351 -12.39470 -12.08883 -11.93787 -11.82874 -11.36870 -11.14316 -10.78086 -10.54645 -9.72024 -9.49785 -9.21506 -9.14653 -8.16028 -6.24230 0.49030 0.52055 1.41098 1.42856 1.50158 2.40316 2.84624 2.99842 3.15148 3.18294 3.68015 3.99501 4.06126 4.12397 4.22135 4.23678 4.38985 4.47066 4.52010 4.60902 4.69433 4.74668 4.78152 4.83375 4.91819 4.98191 5.04308 5.09826 5.20375 5.25607 5.28082 5.41602 5.60028 5.63620 5.73685 5.80451 6.06582 6.14957 6.21836 6.28086 6.42320 6.85314 6.90029 7.43806 8.94512 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017270 B = 0.007398 C = 0.006833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.942073 B = 3783.849780 C = 4096.901679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.700 5.700 3 C 0.118 3.882 4 C -0.081 4.081 5 C -0.100 4.100 6 C -0.128 4.128 7 C -0.115 4.115 8 C -0.172 4.172 9 C 0.092 3.908 10 N -0.473 5.473 11 C 0.230 3.770 12 C -0.504 4.504 13 H 0.072 0.928 14 C 0.004 3.996 15 N -0.935 5.935 16 Si 0.959 3.041 17 H -0.267 1.267 18 H -0.289 1.289 19 H -0.270 1.270 20 C 0.003 3.997 21 C -0.147 4.147 22 C -0.157 4.157 23 H 0.064 0.936 24 H 0.079 0.921 25 H 0.015 0.985 26 H 0.340 0.660 27 H 0.088 0.912 28 H 0.032 0.968 29 H 0.147 0.853 30 H 0.154 0.846 31 H 0.138 0.862 32 H 0.097 0.903 33 H -0.006 1.006 34 H -0.037 1.037 35 H 0.261 0.739 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.882 11.261 8.746 14.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.331 5.331 3 C -0.010 4.010 4 C -0.082 4.082 5 C -0.119 4.119 6 C -0.146 4.146 7 C -0.134 4.134 8 C -0.192 4.192 9 C -0.002 4.002 10 N -0.195 5.195 11 C 0.105 3.895 12 C -0.542 4.542 13 H 0.090 0.910 14 C -0.194 4.194 15 N -0.576 5.576 16 Si 0.785 3.215 17 H -0.192 1.192 18 H -0.214 1.214 19 H -0.195 1.195 20 C -0.105 4.105 21 C -0.185 4.185 22 C -0.195 4.195 23 H 0.083 0.917 24 H 0.098 0.902 25 H 0.033 0.967 26 H 0.157 0.843 27 H 0.106 0.894 28 H 0.050 0.950 29 H 0.165 0.835 30 H 0.171 0.829 31 H 0.156 0.844 32 H 0.115 0.885 33 H 0.012 0.988 34 H -0.019 1.019 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.129 0.871 39 H 0.114 0.886 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.311 11.058 9.453 14.607 hybrid contribution 0.502 -0.763 -2.207 2.388 sum -0.808 10.295 7.246 12.615 Atomic orbital electron populations 1.22172 0.87280 1.01864 1.00372 1.60654 1.08317 1.13879 1.50205 1.20629 0.89839 0.90055 1.00508 1.19884 0.95925 1.00398 0.92038 1.21249 0.94559 0.98985 0.97122 1.21418 0.94199 1.00444 0.98515 1.21255 1.00622 0.99357 0.92142 1.21742 0.95112 1.03321 0.99058 1.19110 0.90674 0.98418 0.92036 1.59504 1.54926 1.03296 1.01730 1.19249 0.94114 0.83209 0.92885 1.21420 1.08739 1.04275 1.19771 0.91024 1.25808 0.97908 0.96280 0.99369 1.70092 1.32882 1.11690 1.42922 0.85583 0.79451 0.77293 0.79195 1.19187 1.21447 1.19474 1.22179 0.94101 0.96170 0.98041 1.23030 1.01587 0.92545 1.01289 1.23011 1.01898 1.01626 0.92926 0.91722 0.90243 0.96685 0.84257 0.89373 0.94965 0.83503 0.82861 0.84385 0.88519 0.98796 1.01914 0.93006 0.91561 0.89021 0.87068 0.88596 0.89045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 10.70 127.69 1.37 2.32 16 2 N -0.70 -24.57 6.84 -541.21 -3.70 -28.27 16 3 C 0.12 3.78 5.44 85.56 0.47 4.25 16 4 C -0.08 -2.75 5.41 -19.73 -0.11 -2.85 16 5 C -0.10 -2.77 9.66 22.25 0.22 -2.55 16 6 C -0.13 -3.25 10.04 22.29 0.22 -3.03 16 7 C -0.12 -3.37 10.04 22.25 0.22 -3.15 16 8 C -0.17 -6.38 8.70 22.40 0.19 -6.18 16 9 C 0.09 3.60 4.59 38.21 0.18 3.77 16 10 N -0.47 -20.24 3.54 -675.71 -2.39 -22.63 16 11 C 0.23 12.10 4.08 85.56 0.35 12.45 16 12 C -0.50 -27.37 8.05 25.60 0.21 -27.16 16 13 H 0.07 3.77 5.47 -2.91 -0.02 3.76 16 14 C 0.00 0.23 5.46 84.65 0.46 0.69 16 15 N -0.93 -56.11 13.29 21.45 0.28 -55.82 16 16 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 18 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 C 0.00 0.11 4.57 44.92 0.21 0.32 16 21 C -0.15 -4.60 10.46 30.60 0.32 -4.28 16 22 C -0.16 -5.77 9.38 30.60 0.29 -5.48 16 23 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 25 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.34 14.46 8.26 -89.69 -0.74 13.72 16 27 H 0.09 2.32 8.01 -2.39 -0.02 2.30 16 28 H 0.03 1.12 7.59 -2.39 -0.02 1.10 16 29 H 0.15 3.17 8.04 -2.91 -0.02 3.14 16 30 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 31 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 32 H 0.10 3.84 7.47 -2.91 -0.02 3.81 16 33 H -0.01 -0.35 7.79 -2.39 -0.02 -0.37 16 34 H -0.04 -2.18 7.87 -2.39 -0.02 -2.20 16 35 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 36 H 0.07 2.65 7.36 -2.39 -0.02 2.63 16 37 H 0.09 2.87 7.94 -2.39 -0.02 2.85 16 38 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 39 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.09 3.77 5.65 -2.39 -0.01 3.76 16 Total: -1.00 -62.73 327.72 1.08 -61.64 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.28 Total: 30.13 kcal Atomic # 6 Polarization: -35.48 SS G_CDS: 4.59 Total: -30.89 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -5.81 Total: -106.72 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -62.73 1.08 -61.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723181092.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.344 kcal (2) G-P(sol) polarization free energy of solvation -62.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds