Wall clock time and date at job start Mon Mar 30 2020 06:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47906 * 110.99826 * 2 1 4 4 C 1.54590 * 102.63600 * 265.48467 * 3 2 1 5 5 C 1.51584 * 102.88373 * 334.38873 * 4 3 2 6 6 C 1.37927 * 131.47434 * 196.28368 * 5 4 3 7 7 C 1.38864 * 120.01984 * 179.88926 * 6 5 4 8 8 N 1.40008 * 120.13004 * 179.62964 * 7 6 5 9 9 C 1.46499 * 119.99846 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.47104 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.46839 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47020 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99707 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00432 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99873 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00249 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47197 * 89.99974 * 16 14 12 18 18 H 1.48501 * 109.47107 * 210.00080 * 16 14 12 19 19 H 1.48506 * 109.47074 * 329.99832 * 16 14 12 20 20 C 1.38874 * 119.73416 * 359.35879 * 7 6 5 21 21 C 1.37886 * 120.17988 * 0.70892 * 20 7 6 22 22 C 1.38922 * 107.97652 * 16.05566 * 5 4 3 23 23 H 1.09006 * 109.47611 * 59.99616 * 1 2 3 24 24 H 1.08999 * 109.47683 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47036 * 299.99469 * 1 2 3 26 26 H 1.09004 * 110.77226 * 147.19847 * 3 2 1 27 27 H 1.09004 * 110.93980 * 23.84519 * 3 2 1 28 28 H 1.09006 * 110.72823 * 216.04073 * 4 3 2 29 29 H 1.08994 * 110.88390 * 92.81524 * 4 3 2 30 30 H 1.08002 * 119.98634 * 359.60510 * 6 5 4 31 31 H 0.96999 * 120.00061 * 359.97438 * 8 7 6 32 32 H 1.09004 * 109.47089 * 299.99850 * 9 8 7 33 33 H 1.08997 * 109.47226 * 59.99758 * 9 8 7 34 34 H 1.08998 * 109.46763 * 299.99523 * 10 9 8 35 35 H 1.08998 * 109.46846 * 59.99472 * 10 9 8 36 36 H 1.09004 * 109.47418 * 299.99888 * 11 10 9 37 37 H 1.08998 * 109.47636 * 60.00197 * 11 10 9 38 38 H 0.96997 * 120.00639 * 180.02562 * 15 14 12 39 39 H 1.07995 * 119.91209 * 180.41993 * 20 7 6 40 40 H 1.08005 * 119.85375 * 179.74266 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 2.2310 1.6540 -1.5038 5 6 2.4318 0.2634 -2.0729 6 6 2.9604 -0.1650 -3.2726 7 6 3.0339 -1.5229 -3.5539 8 7 3.5630 -1.9601 -4.7743 9 6 3.6387 -3.3933 -5.0683 10 6 4.2520 -3.5977 -6.4551 11 6 4.3316 -5.0945 -6.7618 12 6 4.9351 -5.2958 -8.1280 13 1 5.2325 -4.4416 -8.7181 14 6 5.1075 -6.5705 -8.6245 15 7 4.7459 -7.6107 -7.9056 16 14 5.8562 -6.8200 -10.3175 17 1 7.3315 -6.9362 -10.1941 18 1 5.3107 -8.0620 -10.9218 19 1 5.5216 -5.6603 -11.1826 20 6 2.5858 -2.4455 -2.6177 21 6 2.0563 -2.0157 -1.4193 22 6 1.9720 -0.6537 -1.1361 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 2.9373 1.4348 0.5521 27 1 1.2693 2.0782 0.4116 28 1 3.1222 2.2640 -1.6521 29 1 1.3594 2.1319 -1.9509 30 1 3.3130 0.5559 -3.9953 31 1 3.8787 -1.3141 -5.4253 32 1 4.2604 -3.8853 -4.3203 33 1 2.6368 -3.8220 -5.0469 34 1 3.6305 -3.1057 -7.2032 35 1 5.2539 -3.1690 -6.4760 36 1 4.9532 -5.5862 -6.0136 37 1 3.3298 -5.5235 -6.7408 38 1 4.8675 -8.5075 -8.2547 39 1 2.6479 -3.5024 -2.8307 40 1 1.7056 -2.7377 -0.6967 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757123829.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:45 Heat of formation + Delta-G solvation = 26.358493 kcal Electronic energy + Delta-G solvation = -18367.605320 eV Core-core repulsion = 15567.530823 eV Total energy + Delta-G solvation = -2800.074497 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.67073 -37.87231 -35.21932 -33.30473 -32.35626 -31.36647 -29.22056 -28.27751 -26.43450 -25.38813 -23.32216 -22.82789 -21.00923 -20.40765 -20.24021 -16.73536 -16.58527 -16.36139 -16.00059 -15.37318 -14.78550 -14.60690 -14.34639 -13.98728 -13.53899 -13.20119 -13.09931 -12.86369 -12.66843 -12.32978 -12.21463 -11.94747 -11.76202 -11.63466 -11.32293 -10.93755 -10.85528 -10.62361 -10.58111 -10.07822 -9.71210 -9.49234 -9.15152 -8.79803 -8.60482 -8.39592 -6.96152 -6.04488 -4.07340 1.47413 1.64119 3.29323 3.35688 3.38598 3.56769 3.76408 3.90582 4.42701 4.49530 4.71763 4.82004 5.05140 5.10391 5.28392 5.31532 5.34634 5.38713 5.47944 5.56073 5.64274 5.65927 5.73199 5.74983 5.86527 6.03474 6.11120 6.21768 6.41115 6.52928 6.57814 6.61921 6.75208 6.91585 6.96319 7.24615 7.58863 7.60409 7.72952 7.94181 7.97958 8.36159 8.99195 9.57049 11.06891 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.058599 B = 0.002875 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.710084 B = 9738.125512 C =10087.634774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.491 5.491 3 C 0.051 3.949 4 C -0.111 4.111 5 C -0.090 4.090 6 C -0.174 4.174 7 C 0.219 3.781 8 N -0.744 5.744 9 C 0.121 3.879 10 C -0.120 4.120 11 C 0.024 3.976 12 C -0.522 4.522 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.184 4.184 21 C -0.056 4.056 22 C 0.010 3.990 23 H 0.029 0.971 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.116 0.884 31 H 0.397 0.603 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.261 0.739 39 H 0.128 0.872 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.037 17.247 14.534 23.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.209 5.209 3 C -0.076 4.076 4 C -0.149 4.149 5 C -0.094 4.094 6 C -0.198 4.198 7 C 0.114 3.886 8 N -0.372 5.372 9 C -0.002 4.002 10 C -0.158 4.158 11 C -0.013 4.013 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.208 4.208 21 C -0.076 4.076 22 C -0.086 4.086 23 H 0.047 0.953 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.134 0.866 31 H 0.231 0.769 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.146 0.854 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.922 16.565 14.993 23.390 hybrid contribution 0.320 0.362 -1.922 1.981 sum -6.602 16.927 13.072 22.382 Atomic orbital electron populations 1.22481 0.86609 1.02494 1.00462 1.60370 1.07838 1.14162 1.38512 1.23105 1.01069 0.88348 0.95123 1.21669 1.02533 0.94510 0.96178 1.20585 0.99977 0.95073 0.93720 1.19730 1.08635 0.93602 0.97805 1.17772 0.92130 0.92109 0.86616 1.45048 1.68187 1.07802 1.16119 1.21606 1.00389 0.79583 0.98627 1.21845 0.99317 1.01840 0.92800 1.19026 0.97431 0.88132 0.96725 1.21212 1.41005 0.92121 1.01742 0.92685 1.25023 0.95644 0.96161 0.97617 1.69955 1.47702 0.98270 1.37442 0.86580 0.79393 0.77635 0.84312 1.20627 1.21171 1.19896 1.20505 1.06636 0.99330 0.94285 1.20190 0.98451 0.92841 0.96164 1.19200 1.05349 0.93375 0.90701 0.95265 0.91185 0.91316 0.89527 0.90168 0.89867 0.90406 0.86597 0.76874 0.92539 0.92577 0.92822 0.92802 0.96334 0.96343 0.92913 0.85364 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.29 60.06 0.56 0.80 16 2 N -0.49 -5.50 5.34 -176.75 -0.94 -6.44 16 3 C 0.05 0.45 6.99 -2.43 -0.02 0.43 16 4 C -0.11 -1.04 6.97 -26.61 -0.19 -1.23 16 5 C -0.09 -1.14 6.22 -104.05 -0.65 -1.78 16 6 C -0.17 -2.30 9.89 -39.46 -0.39 -2.69 16 7 C 0.22 3.16 6.66 -83.66 -0.56 2.61 16 8 N -0.74 -10.91 5.75 -58.56 -0.34 -11.25 16 9 C 0.12 2.03 4.92 -4.04 -0.02 2.01 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 12 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 13 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 16 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 C -0.18 -2.62 9.30 -39.47 -0.37 -2.99 16 21 C -0.06 -0.75 10.06 -39.29 -0.40 -1.14 16 22 C 0.01 0.14 5.60 -83.26 -0.47 -0.33 16 23 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 0.54 7.77 -51.93 -0.40 0.13 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.40 5.28 8.49 -40.82 -0.35 4.93 16 32 H 0.06 0.96 7.94 -51.93 -0.41 0.55 16 33 H 0.06 0.95 7.97 -51.93 -0.41 0.53 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.13 1.79 6.74 -52.49 -0.35 1.44 16 40 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 LS Contribution 328.41 15.07 4.95 4.95 Total: -1.00 -30.43 328.41 -10.34 -40.77 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.54 Total: 1.18 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -3.18 Total: -19.73 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: -0.54 Total: -43.64 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.43 -10.34 -40.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757123829.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.124 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds